Wall clock time and date at job start Mon Mar 30 2020 01:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46862 * 2 1 4 4 C 1.53002 * 109.47094 * 119.99565 * 2 1 3 5 5 H 1.08994 * 115.56271 * 274.30282 * 4 2 1 6 6 C 1.52994 * 117.49789 * 128.60927 * 4 2 1 7 7 C 1.52993 * 60.00309 * 252.51298 * 6 4 2 8 8 H 1.09005 * 117.50032 * 107.48697 * 7 6 4 9 9 N 1.46499 * 117.50349 * 252.51448 * 7 6 4 10 10 C 1.34777 * 120.00279 * 223.62680 * 9 7 6 11 11 O 1.21611 * 119.99722 * 359.97438 * 10 9 7 12 12 C 1.47433 * 120.00214 * 179.97438 * 10 9 7 13 13 C 1.39218 * 120.28023 * 354.15641 * 12 10 9 14 14 C 1.38228 * 120.08863 * 179.72752 * 13 12 10 15 15 C 1.38819 * 120.67749 * 0.55310 * 14 13 12 16 16 C 1.37605 * 120.56849 * 359.72476 * 15 14 13 17 17 C 1.40698 * 119.88336 * 359.97438 * 16 15 14 18 18 C 1.40883 * 120.32966 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00055 * 145.84740 * 18 17 16 20 20 C 1.40277 * 120.00074 * 325.84913 * 18 17 16 21 21 N 1.30632 * 120.00010 * 350.76576 * 20 18 17 22 22 Si 1.86797 * 119.99905 * 170.76346 * 20 18 17 23 23 H 1.48509 * 109.47011 * 90.00216 * 22 20 18 24 24 H 1.48499 * 109.47190 * 209.99803 * 22 20 18 25 25 H 1.48501 * 109.47706 * 330.00047 * 22 20 18 26 26 H 1.08989 * 109.47756 * 300.00202 * 1 2 3 27 27 H 1.09007 * 109.47001 * 60.00346 * 1 2 3 28 28 H 1.09004 * 109.46763 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47576 * 239.99897 * 2 1 3 30 30 H 1.08994 * 109.47075 * 59.99882 * 3 2 1 31 31 H 1.09005 * 109.46898 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47262 * 299.99624 * 3 2 1 33 33 H 1.08996 * 117.50176 * 0.02562 * 6 4 2 34 34 H 1.09007 * 117.49936 * 145.02768 * 6 4 2 35 35 H 0.97002 * 119.99870 * 43.61031 * 9 7 6 36 36 H 1.07999 * 119.95850 * 359.97438 * 13 12 10 37 37 H 1.08002 * 119.65803 * 180.30389 * 14 13 12 38 38 H 1.08001 * 119.71993 * 179.74783 * 15 14 13 39 39 H 1.07998 * 120.05227 * 180.02562 * 16 15 14 40 40 H 0.96992 * 120.00067 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 2.1272 -0.1060 2.1448 6 6 3.0738 -1.8314 1.0515 7 6 1.6355 -2.1851 1.4345 8 1 1.0060 -2.6343 0.6663 9 7 1.3950 -2.6525 2.8019 10 6 0.5844 -3.7068 3.0210 11 8 0.0523 -4.2697 2.0835 12 6 0.3428 -4.1776 4.3971 13 6 1.0411 -3.6176 5.4634 14 6 0.8073 -4.0581 6.7526 15 6 -0.1132 -5.0672 7.0003 16 6 -0.8145 -5.6440 5.9663 17 6 -0.5999 -5.2095 4.6454 18 6 -1.3123 -5.7938 3.5797 19 1 -1.5986 -5.1940 2.7284 20 6 -1.6499 -7.1546 3.6243 21 7 -1.1536 -7.9204 4.5590 22 14 -2.8092 -7.8716 2.3471 23 1 -2.0243 -8.3596 1.1846 24 1 -3.5649 -9.0022 2.9437 25 1 -3.7600 -6.8233 1.8974 26 1 -0.3634 0.5138 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 3.3911 -2.0479 0.0314 34 1 3.8413 -1.9467 1.8169 35 1 1.8193 -2.2034 3.5497 36 1 1.7634 -2.8351 5.2835 37 1 1.3494 -3.6153 7.5751 38 1 -0.2807 -5.4023 8.0132 39 1 -1.5289 -6.4282 6.1686 40 1 -1.3873 -8.8613 4.5900 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601632530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:14 Heat of formation + Delta-G solvation = -9.203098 kcal Electronic energy + Delta-G solvation = -20561.500910 eV Core-core repulsion = 17533.939543 eV Total energy + Delta-G solvation = -3027.561366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.28640 -37.95466 -36.52008 -34.12086 -33.61789 -31.69569 -29.89325 -29.26141 -27.18059 -25.46578 -23.17755 -22.68494 -21.39838 -20.60697 -20.04452 -19.20217 -17.51032 -16.34717 -15.93175 -15.23144 -14.83310 -14.27353 -14.22202 -13.89968 -13.74423 -13.14939 -13.02641 -12.71919 -12.68296 -12.56043 -12.23792 -11.97847 -11.63910 -11.30942 -11.17467 -11.09487 -11.03667 -10.72403 -10.69510 -10.55860 -10.51983 -10.07743 -9.91354 -9.65838 -9.25952 -8.43601 -8.10463 -7.58591 -7.35564 -6.79679 -4.38512 2.34680 2.81487 3.10441 3.17790 3.24122 3.77949 3.86637 3.98224 4.27666 4.67752 4.77058 4.88409 4.99038 5.18550 5.28640 5.42363 5.59012 5.62647 5.63700 5.80174 5.83078 5.89743 5.94263 5.97994 6.00868 6.16359 6.26176 6.30344 6.35863 6.40441 6.63933 6.95383 7.09977 7.16516 7.24968 7.46055 7.62012 7.88631 7.98173 8.17683 8.37623 8.66436 8.82229 8.89854 9.39846 10.15730 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017821 B = 0.005121 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.811980 B = 5466.669695 C = 6615.869922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.162 4.162 5 H 0.102 0.898 6 C -0.197 4.197 7 C 0.103 3.897 8 H 0.133 0.867 9 N -0.719 5.719 10 C 0.568 3.432 11 O -0.536 6.536 12 C -0.262 4.262 13 C -0.057 4.057 14 C -0.246 4.246 15 C -0.095 4.095 16 C -0.148 4.148 17 C 0.147 3.853 18 C -0.416 4.416 19 H 0.105 0.895 20 C 0.069 3.931 21 N -0.793 5.793 22 Si 0.918 3.082 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.259 1.259 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.393 0.607 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.446 11.126 -4.599 12.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.200 4.200 4 C -0.182 4.182 5 H 0.120 0.880 6 C -0.236 4.236 7 C -0.004 4.004 8 H 0.151 0.849 9 N -0.371 5.371 10 C 0.363 3.637 11 O -0.414 6.414 12 C -0.267 4.267 13 C -0.076 4.076 14 C -0.265 4.265 15 C -0.114 4.114 16 C -0.167 4.167 17 C 0.142 3.858 18 C -0.444 4.444 19 H 0.123 0.877 20 C -0.149 4.149 21 N -0.418 5.418 22 Si 0.742 3.258 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.183 1.183 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.227 0.773 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.135 0.865 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.025 10.430 -5.189 12.325 hybrid contribution 0.076 -0.184 0.031 0.202 sum 4.102 10.246 -5.157 12.182 Atomic orbital electron populations 1.21827 0.94833 1.02453 1.01343 1.20662 0.95819 0.95635 0.96026 1.21800 1.00863 0.95789 1.01539 1.22869 1.03966 0.91608 0.99754 0.87983 1.23574 0.93937 1.03430 1.02689 1.21485 0.96628 0.94791 0.87494 0.84940 1.45489 1.51276 1.34243 1.06093 1.18430 0.77107 0.78276 0.89915 1.90664 1.49858 1.55921 1.44992 1.19424 1.07173 1.09804 0.90345 1.20640 0.96832 0.97065 0.93044 1.20278 1.06437 1.04478 0.95336 1.20802 0.96776 0.96339 0.97505 1.21357 1.01890 1.01569 0.91870 1.17467 0.87445 0.88099 0.92751 1.20174 1.26162 0.93856 1.04181 0.87705 1.26125 0.94863 0.97628 0.96267 1.69715 1.34982 1.06940 1.30158 0.86149 0.80280 0.78701 0.80667 1.19301 1.20305 1.18298 0.92651 0.93013 0.92096 0.91215 0.92734 0.92759 0.92863 0.88574 0.88930 0.77292 0.89341 0.89116 0.89068 0.86458 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.03 37.16 0.34 -1.34 16 2 C -0.06 -0.67 3.07 -90.62 -0.28 -0.95 16 3 C -0.14 -1.27 9.18 37.16 0.34 -0.93 16 4 C -0.16 -1.96 5.07 -90.62 -0.46 -2.41 16 5 H 0.10 1.19 8.11 -51.93 -0.42 0.77 16 6 C -0.20 -2.47 10.10 -26.74 -0.27 -2.74 16 7 C 0.10 1.61 5.64 -67.93 -0.38 1.22 16 8 H 0.13 2.31 6.86 -51.93 -0.36 1.95 16 9 N -0.72 -12.99 5.51 -54.88 -0.30 -13.29 16 10 C 0.57 13.24 7.72 -12.52 -0.10 13.14 16 11 O -0.54 -14.13 13.15 5.27 0.07 -14.06 16 12 C -0.26 -6.44 5.92 -104.37 -0.62 -7.06 16 13 C -0.06 -1.22 9.52 -39.22 -0.37 -1.59 16 14 C -0.25 -5.24 10.03 -39.37 -0.39 -5.63 16 15 C -0.10 -2.15 10.01 -39.60 -0.40 -2.55 16 16 C -0.15 -3.76 8.62 -38.88 -0.34 -4.09 16 17 C 0.15 3.94 5.51 -106.55 -0.59 3.36 16 18 C -0.42 -11.46 7.68 -37.82 -0.29 -11.75 16 19 H 0.11 2.99 5.92 -52.48 -0.31 2.68 16 20 C 0.07 1.79 5.25 -17.30 -0.09 1.70 16 21 N -0.79 -20.63 11.14 55.56 0.62 -20.01 16 22 Si 0.92 19.74 29.57 -169.99 -5.03 14.71 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 25 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 26 H 0.05 0.64 8.14 -51.94 -0.42 0.21 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.80 7.29 -51.93 -0.38 0.42 16 29 H 0.07 0.73 7.90 -51.93 -0.41 0.32 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 1.10 8.05 -51.93 -0.42 0.68 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.39 6.17 6.89 -40.82 -0.28 5.89 16 36 H 0.09 1.56 6.44 -52.49 -0.34 1.23 16 37 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.12 3.04 6.60 -52.49 -0.35 2.70 16 40 H 0.28 6.67 8.29 -40.82 -0.34 6.33 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -29.11 330.37 -9.34 -38.45 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.78 Total: 10.85 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -3.90 Total: -21.63 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.32 Total: -33.30 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.07 Total: -14.06 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.71 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.11 -9.34 -38.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601632530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.246 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds