Wall clock time and date at job start Mon Mar 30 2020 01:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46862 * 2 1 4 4 C 1.53002 * 109.47094 * 119.99565 * 2 1 3 5 5 H 1.08994 * 115.56271 * 274.30282 * 4 2 1 6 6 C 1.52994 * 117.49789 * 128.60927 * 4 2 1 7 7 C 1.52993 * 60.00309 * 252.51298 * 6 4 2 8 8 H 1.09005 * 117.50032 * 107.48697 * 7 6 4 9 9 N 1.46499 * 117.50349 * 252.51448 * 7 6 4 10 10 C 1.34777 * 120.00279 * 223.62680 * 9 7 6 11 11 O 1.21611 * 119.99722 * 359.97438 * 10 9 7 12 12 C 1.47433 * 120.00214 * 179.97438 * 10 9 7 13 13 C 1.39218 * 120.28023 * 354.15641 * 12 10 9 14 14 C 1.38228 * 120.08863 * 179.72752 * 13 12 10 15 15 C 1.38819 * 120.67749 * 0.55310 * 14 13 12 16 16 C 1.37605 * 120.56849 * 359.72476 * 15 14 13 17 17 C 1.40698 * 119.88336 * 359.97438 * 16 15 14 18 18 C 1.40883 * 120.32966 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00055 * 145.84740 * 18 17 16 20 20 C 1.40277 * 120.00074 * 325.84913 * 18 17 16 21 21 N 1.30632 * 120.00010 * 350.76576 * 20 18 17 22 22 Si 1.86797 * 119.99905 * 170.76346 * 20 18 17 23 23 H 1.48509 * 109.47011 * 90.00216 * 22 20 18 24 24 H 1.48499 * 109.47190 * 209.99803 * 22 20 18 25 25 H 1.48501 * 109.47706 * 330.00047 * 22 20 18 26 26 H 1.08989 * 109.47756 * 300.00202 * 1 2 3 27 27 H 1.09007 * 109.47001 * 60.00346 * 1 2 3 28 28 H 1.09004 * 109.46763 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47576 * 239.99897 * 2 1 3 30 30 H 1.08994 * 109.47075 * 59.99882 * 3 2 1 31 31 H 1.09005 * 109.46898 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47262 * 299.99624 * 3 2 1 33 33 H 1.08996 * 117.50176 * 0.02562 * 6 4 2 34 34 H 1.09007 * 117.49936 * 145.02768 * 6 4 2 35 35 H 0.97002 * 119.99870 * 43.61031 * 9 7 6 36 36 H 1.07999 * 119.95850 * 359.97438 * 13 12 10 37 37 H 1.08002 * 119.65803 * 180.30389 * 14 13 12 38 38 H 1.08001 * 119.71993 * 179.74783 * 15 14 13 39 39 H 1.07998 * 120.05227 * 180.02562 * 16 15 14 40 40 H 0.96992 * 120.00067 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 2.1272 -0.1060 2.1448 6 6 3.0738 -1.8314 1.0515 7 6 1.6355 -2.1851 1.4345 8 1 1.0060 -2.6343 0.6663 9 7 1.3950 -2.6525 2.8019 10 6 0.5844 -3.7068 3.0210 11 8 0.0523 -4.2697 2.0835 12 6 0.3428 -4.1776 4.3971 13 6 1.0411 -3.6176 5.4634 14 6 0.8073 -4.0581 6.7526 15 6 -0.1132 -5.0672 7.0003 16 6 -0.8145 -5.6440 5.9663 17 6 -0.5999 -5.2095 4.6454 18 6 -1.3123 -5.7938 3.5797 19 1 -1.5986 -5.1940 2.7284 20 6 -1.6499 -7.1546 3.6243 21 7 -1.1536 -7.9204 4.5590 22 14 -2.8092 -7.8716 2.3471 23 1 -2.0243 -8.3596 1.1846 24 1 -3.5649 -9.0022 2.9437 25 1 -3.7600 -6.8233 1.8974 26 1 -0.3634 0.5138 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 3.3911 -2.0479 0.0314 34 1 3.8413 -1.9467 1.8169 35 1 1.8193 -2.2034 3.5497 36 1 1.7634 -2.8351 5.2835 37 1 1.3494 -3.6153 7.5751 38 1 -0.2807 -5.4023 8.0132 39 1 -1.5289 -6.4282 6.1686 40 1 -1.3873 -8.8613 4.5900 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601632530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:13 Heat of formation + Delta-G solvation = -25.161140 kcal Electronic energy + Delta-G solvation = -20562.192902 eV Core-core repulsion = 17533.939543 eV Total energy + Delta-G solvation = -3028.253359 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.86190 -39.35153 -38.22700 -35.72932 -35.11648 -33.11502 -31.74651 -30.99825 -27.99964 -27.34823 -24.67129 -23.79147 -23.03527 -22.20230 -21.38989 -20.53819 -19.35806 -18.01413 -17.37242 -17.03553 -16.06619 -15.80624 -15.67554 -15.51420 -15.11733 -14.86706 -14.49556 -14.14684 -13.97992 -13.68911 -13.43726 -13.35846 -13.02599 -12.88814 -12.86379 -12.51333 -12.30592 -12.17378 -12.13058 -11.90442 -11.77056 -11.57564 -11.49306 -11.14970 -10.94430 -10.27725 -9.62074 -9.33993 -9.21697 -8.68113 -6.36718 0.50754 1.00964 1.32550 1.45796 1.49165 2.20347 2.27765 2.36593 2.76002 2.99593 3.71540 3.76904 3.83106 4.04113 4.16350 4.26334 4.35826 4.43392 4.48726 4.59225 4.67921 4.80548 4.84350 4.90492 4.97308 5.04600 5.08128 5.12401 5.22336 5.25028 5.28711 5.33715 5.44433 5.52707 5.61157 5.74378 5.82256 6.05761 6.10304 6.33985 6.64151 6.79362 6.91592 7.00716 7.66266 8.29537 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017821 B = 0.005121 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.811980 B = 5466.669695 C = 6615.869922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C -0.138 4.138 4 C -0.134 4.134 5 H 0.115 0.885 6 C -0.177 4.177 7 C 0.060 3.940 8 H 0.104 0.896 9 N -0.700 5.700 10 C 0.562 3.438 11 O -0.579 6.579 12 C -0.282 4.282 13 C -0.054 4.054 14 C -0.236 4.236 15 C -0.092 4.092 16 C -0.177 4.177 17 C 0.115 3.885 18 C -0.458 4.458 19 H 0.080 0.920 20 C 0.032 3.968 21 N -0.823 5.823 22 Si 0.979 3.021 23 H -0.271 1.271 24 H -0.255 1.255 25 H -0.264 1.264 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.406 0.594 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.418 13.359 -4.029 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 C -0.195 4.195 4 C -0.154 4.154 5 H 0.133 0.867 6 C -0.215 4.215 7 C -0.046 4.046 8 H 0.122 0.878 9 N -0.351 5.351 10 C 0.356 3.644 11 O -0.460 6.460 12 C -0.287 4.287 13 C -0.073 4.073 14 C -0.255 4.255 15 C -0.110 4.110 16 C -0.197 4.197 17 C 0.112 3.888 18 C -0.487 4.487 19 H 0.098 0.902 20 C -0.183 4.183 21 N -0.449 5.449 22 Si 0.800 3.200 23 H -0.196 1.196 24 H -0.179 1.179 25 H -0.188 1.188 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.243 0.757 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.139 0.861 39 H 0.118 0.882 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.036 12.710 -4.599 14.803 hybrid contribution -0.392 -0.688 -0.078 0.796 sum 5.644 12.022 -4.676 14.080 Atomic orbital electron populations 1.21814 0.95684 1.00864 1.02036 1.20723 0.95069 0.97004 0.95445 1.21759 1.01418 0.94077 1.02238 1.22954 1.01874 0.89787 1.00781 0.86679 1.23652 0.92182 1.01969 1.03710 1.21567 0.99292 0.98177 0.85553 0.87778 1.45165 1.49599 1.32504 1.07826 1.18450 0.77614 0.79197 0.89185 1.90639 1.51709 1.57719 1.45981 1.19826 1.07138 1.09543 0.92151 1.21063 0.96600 0.97368 0.92252 1.20804 1.05147 1.03043 0.96508 1.21191 0.95858 0.95854 0.98117 1.21301 1.03340 1.02665 0.92369 1.17853 0.88322 0.89341 0.93319 1.20124 1.29211 0.94998 1.04320 0.90160 1.26788 0.95971 0.97343 0.98179 1.69737 1.36181 1.07404 1.31606 0.85263 0.78308 0.78273 0.78155 1.19626 1.17907 1.18787 0.92915 0.91411 0.94807 0.90854 0.92504 0.91805 0.91807 0.87288 0.87712 0.75680 0.85044 0.84870 0.86145 0.88173 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.03 71.98 0.65 -2.58 16 2 C -0.06 -1.22 3.07 -10.79 -0.03 -1.25 16 3 C -0.14 -2.00 9.18 71.98 0.66 -1.34 16 4 C -0.13 -2.92 5.07 -10.79 -0.05 -2.98 16 5 H 0.12 2.26 8.11 -2.39 -0.02 2.24 16 6 C -0.18 -3.97 10.10 30.59 0.31 -3.66 16 7 C 0.06 1.85 5.64 44.99 0.25 2.10 16 8 H 0.10 3.83 6.86 -2.38 -0.02 3.81 16 9 N -0.70 -24.83 5.51 -445.79 -2.46 -27.29 16 10 C 0.56 26.93 7.72 86.67 0.67 27.60 16 11 O -0.58 -32.44 13.15 -4.07 -0.05 -32.49 16 12 C -0.28 -14.01 5.92 -19.70 -0.12 -14.12 16 13 C -0.05 -2.19 9.52 22.50 0.21 -1.98 16 14 C -0.24 -9.25 10.03 22.41 0.22 -9.03 16 15 C -0.09 -4.00 10.01 22.26 0.22 -3.78 16 16 C -0.18 -9.27 8.62 22.72 0.20 -9.07 16 17 C 0.12 6.48 5.51 -21.11 -0.12 6.36 16 18 C -0.46 -26.90 7.68 23.41 0.18 -26.72 16 19 H 0.08 4.97 5.92 -2.91 -0.02 4.96 16 20 C 0.03 1.73 5.25 85.37 0.45 2.18 16 21 N -0.82 -44.70 11.14 21.88 0.24 -44.45 16 22 Si 0.98 42.46 29.57 68.60 2.03 44.49 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 25 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.03 0.91 7.29 -2.39 -0.02 0.89 16 29 H 0.07 1.37 7.90 -2.39 -0.02 1.35 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.11 2.20 8.05 -2.39 -0.02 2.18 16 34 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.41 11.79 6.89 -92.71 -0.64 11.15 16 36 H 0.13 4.08 6.44 -2.91 -0.02 4.06 16 37 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 38 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 39 H 0.10 5.46 6.60 -2.91 -0.02 5.44 16 40 H 0.29 14.16 8.29 -92.71 -0.77 13.39 16 Total: -1.00 -68.01 330.37 3.87 -64.14 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: 0.40 Total: 33.87 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 3.71 Total: -38.27 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -2.21 Total: -71.75 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.05 Total: -32.49 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -68.01 3.87 -64.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601632530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.982 kcal (2) G-P(sol) polarization free energy of solvation -68.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds