Wall clock time and date at job start Mon Mar 30 2020 02:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47501 * 2 1 4 4 H 1.08993 * 109.47290 * 55.00035 * 3 2 1 5 5 N 1.46497 * 109.47090 * 295.00007 * 3 2 1 6 6 C 1.34774 * 120.00234 * 84.99889 * 5 3 2 7 7 O 1.21618 * 119.99610 * 359.97438 * 6 5 3 8 8 C 1.47428 * 120.00477 * 180.02562 * 6 5 3 9 9 C 1.39227 * 120.28203 * 356.95999 * 8 6 5 10 10 C 1.38226 * 120.09245 * 180.28427 * 9 8 6 11 11 C 1.38819 * 120.67786 * 359.71317 * 10 9 8 12 12 C 1.37601 * 120.56523 * 359.97438 * 11 10 9 13 13 C 1.40701 * 119.88763 * 0.02562 * 12 11 10 14 14 C 1.40888 * 120.32971 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99755 * 145.83044 * 14 13 12 16 16 C 1.40270 * 120.00333 * 325.83097 * 14 13 12 17 17 N 1.30626 * 120.00028 * 340.90079 * 16 14 13 18 18 Si 1.86800 * 120.00207 * 160.89156 * 16 14 13 19 19 H 1.48499 * 109.47345 * 270.00824 * 18 16 14 20 20 H 1.48500 * 109.46924 * 30.00395 * 18 16 14 21 21 H 1.48492 * 109.47276 * 150.00043 * 18 16 14 22 22 C 1.53006 * 109.47083 * 175.00100 * 3 2 1 23 23 C 1.52998 * 117.49777 * 248.74593 * 22 3 2 24 24 C 1.53002 * 117.49763 * 180.08553 * 22 3 2 25 25 H 1.09002 * 109.47586 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46659 * 300.00580 * 1 2 3 27 27 H 1.09004 * 109.47010 * 59.99978 * 1 2 3 28 28 H 1.09004 * 109.47075 * 239.99473 * 2 1 3 29 29 H 1.09004 * 109.47010 * 120.00022 * 2 1 3 30 30 H 0.97004 * 120.00040 * 265.00618 * 5 3 2 31 31 H 1.08004 * 119.95726 * 359.97438 * 9 8 6 32 32 H 1.08003 * 119.65624 * 179.73750 * 10 9 8 33 33 H 1.07994 * 119.71839 * 180.02562 * 11 10 9 34 34 H 1.08005 * 120.05189 * 180.02562 * 12 11 10 35 35 H 0.97004 * 119.99592 * 354.75870 * 17 16 14 36 36 H 1.09004 * 115.54706 * 34.41813 * 22 3 2 37 37 H 1.09005 * 117.49981 * 0.02562 * 23 22 3 38 38 H 1.09002 * 117.50024 * 145.02149 * 23 22 3 39 39 H 1.08993 * 117.49788 * 214.97930 * 24 22 3 40 40 H 1.09001 * 117.49692 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8417 5 7 1.6525 2.0974 -1.2518 6 6 0.4353 2.6644 -1.3670 7 8 -0.3416 2.6318 -0.4318 8 6 0.0451 3.3231 -2.6269 9 6 0.9515 3.4184 -3.6793 10 6 0.5834 4.0420 -4.8567 11 6 -0.6898 4.5739 -5.0084 12 6 -1.6096 4.4894 -3.9885 13 6 -1.2602 3.8598 -2.7797 14 6 -2.1944 3.7685 -1.7291 15 1 -2.1988 2.9022 -1.0842 16 6 -3.1187 4.8027 -1.5206 17 7 -2.8983 5.9873 -2.0251 18 14 -4.6652 4.4861 -0.5217 19 1 -5.7531 4.0312 -1.4244 20 1 -4.3927 3.4366 0.4930 21 1 -5.0790 5.7384 0.1604 22 6 3.5649 1.4442 0.1257 23 6 4.1657 1.9735 1.4295 24 6 4.2705 2.8016 0.1463 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.2720 2.1230 -1.9978 31 1 1.9454 3.0090 -3.5739 32 1 1.2936 4.1158 -5.6671 33 1 -0.9611 5.0575 -5.9352 34 1 -2.5980 4.9058 -4.1156 35 1 -2.0611 6.1732 -2.4785 36 1 4.0781 0.6176 -0.3659 37 1 3.4746 2.3201 2.1979 38 1 5.0743 1.4954 1.7955 39 1 5.2480 2.8680 -0.3312 40 1 3.6484 3.6934 0.0699 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601672971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:40 Heat of formation + Delta-G solvation = -8.931166 kcal Electronic energy + Delta-G solvation = -21265.574119 eV Core-core repulsion = 18238.024544 eV Total energy + Delta-G solvation = -3027.549574 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 5.61 seconds Orbital eigenvalues (eV) -39.47344 -37.83901 -36.61598 -34.20467 -33.78776 -31.88303 -29.81363 -29.27730 -26.61779 -25.09802 -22.68012 -22.22084 -21.44334 -21.01516 -20.18413 -19.36203 -18.02094 -16.50107 -15.99948 -15.13253 -14.73201 -14.47517 -14.33074 -14.09198 -13.95341 -13.47903 -12.90237 -12.66408 -12.44087 -12.15029 -11.97066 -11.65846 -11.56541 -11.21966 -11.13708 -10.94142 -10.81119 -10.68931 -10.47728 -10.38604 -10.33758 -10.13491 -10.07666 -9.57842 -9.06550 -8.41185 -8.26646 -7.76879 -7.58672 -7.12110 -4.44133 2.26754 2.74711 3.20658 3.31696 3.42169 3.57479 4.05234 4.10344 4.20542 4.59291 4.65993 4.91032 5.03271 5.24728 5.42931 5.47779 5.53953 5.60942 5.68229 5.86786 5.90022 5.98559 6.04098 6.11713 6.13567 6.20886 6.31166 6.33787 6.48920 6.61955 6.73455 6.90959 7.01148 7.22215 7.30729 7.51399 7.63421 7.74181 7.91318 8.11868 8.24048 8.44523 8.75654 8.88664 9.42715 10.06208 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016405 B = 0.006382 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.390858 B = 4386.028625 C = 5330.117507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.179 3.821 4 H 0.083 0.917 5 N -0.740 5.740 6 C 0.564 3.436 7 O -0.532 6.532 8 C -0.264 4.264 9 C -0.044 4.044 10 C -0.260 4.260 11 C -0.076 4.076 12 C -0.202 4.202 13 C 0.121 3.879 14 C -0.466 4.466 15 H 0.107 0.893 16 C 0.031 3.969 17 N -0.796 5.796 18 Si 1.072 2.928 19 H -0.275 1.275 20 H -0.273 1.273 21 H -0.277 1.277 22 C -0.164 4.164 23 C -0.173 4.173 24 C -0.173 4.173 25 H 0.037 0.963 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.390 0.610 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.298 0.702 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.406 -6.892 2.619 11.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.073 3.927 4 H 0.101 0.899 5 N -0.394 5.394 6 C 0.358 3.642 7 O -0.411 6.411 8 C -0.269 4.269 9 C -0.063 4.063 10 C -0.280 4.280 11 C -0.095 4.095 12 C -0.221 4.221 13 C 0.116 3.884 14 C -0.493 4.493 15 H 0.124 0.876 16 C -0.190 4.190 17 N -0.419 5.419 18 Si 0.895 3.105 19 H -0.201 1.201 20 H -0.197 1.197 21 H -0.202 1.202 22 C -0.183 4.183 23 C -0.210 4.210 24 C -0.211 4.211 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.224 0.776 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.421 -6.150 3.831 10.372 hybrid contribution 2.002 -0.632 -1.159 2.399 sum 9.423 -6.782 2.672 11.914 Atomic orbital electron populations 1.21812 0.94597 0.99891 1.03971 1.21895 0.97300 0.96174 1.01124 1.20364 0.90222 0.93219 0.88846 0.89891 1.46048 1.17748 1.60138 1.15471 1.18292 0.80195 0.77397 0.88274 1.90685 1.50554 1.59032 1.40784 1.19436 0.95702 1.17397 0.94388 1.20730 0.96289 0.96010 0.93255 1.20238 0.97590 1.11577 0.98567 1.20735 0.93900 0.97641 0.97222 1.21252 0.98976 1.08014 0.93869 1.17509 0.89879 0.88672 0.92301 1.21200 1.10063 1.06437 1.11592 0.87558 1.27241 1.02821 0.92333 0.96649 1.70360 1.26806 1.21445 1.23313 0.83536 0.73637 0.76879 0.76432 1.20101 1.19746 1.20210 1.22587 0.95142 0.98154 1.02391 1.22968 1.02674 1.04074 0.91288 1.22913 1.01758 0.95188 1.01205 0.94343 0.92277 0.91481 0.92451 0.92007 0.77578 0.89144 0.88998 0.88969 0.87610 0.88804 0.87699 0.88647 0.88866 0.88928 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.51 37.16 0.32 -2.16 16 2 C -0.13 -1.80 5.59 -26.73 -0.15 -1.95 16 3 C 0.18 2.70 2.45 -67.93 -0.17 2.53 16 4 H 0.08 1.45 7.33 -51.93 -0.38 1.07 16 5 N -0.74 -12.85 4.86 -54.88 -0.27 -13.12 16 6 C 0.56 12.64 6.30 -12.52 -0.08 12.56 16 7 O -0.53 -13.38 10.69 5.26 0.06 -13.33 16 8 C -0.26 -6.34 5.92 -104.37 -0.62 -6.96 16 9 C -0.04 -0.92 9.53 -39.22 -0.37 -1.30 16 10 C -0.26 -5.46 10.03 -39.37 -0.39 -5.86 16 11 C -0.08 -1.69 10.01 -39.60 -0.40 -2.08 16 12 C -0.20 -5.03 7.86 -38.88 -0.31 -5.34 16 13 C 0.12 3.19 5.17 -106.54 -0.55 2.64 16 14 C -0.47 -12.69 7.66 -37.82 -0.29 -12.98 16 15 H 0.11 3.01 5.92 -52.49 -0.31 2.70 16 16 C 0.03 0.81 5.04 -17.30 -0.09 0.72 16 17 N -0.80 -21.38 12.57 55.56 0.70 -20.68 16 18 Si 1.07 22.66 29.98 -169.99 -5.10 17.56 16 19 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 C -0.16 -1.94 5.22 -90.62 -0.47 -2.41 16 23 C -0.17 -1.84 10.18 -26.69 -0.27 -2.12 16 24 C -0.17 -2.01 10.13 -26.69 -0.27 -2.28 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 1.08 7.84 -51.93 -0.41 0.67 16 27 H 0.07 1.36 5.64 -51.93 -0.29 1.07 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.39 6.04 6.64 -40.82 -0.27 5.77 16 31 H 0.09 1.58 6.41 -52.48 -0.34 1.25 16 32 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.11 2.70 6.93 -52.48 -0.36 2.34 16 35 H 0.30 8.20 6.54 -40.82 -0.27 7.93 16 36 H 0.10 1.10 8.11 -51.93 -0.42 0.68 16 37 H 0.10 1.07 8.05 -51.93 -0.42 0.65 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 323.41 15.07 4.87 4.87 Total: -1.00 -28.53 323.41 -9.49 -38.02 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -5.65 Total: 13.64 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -4.11 Total: -26.98 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.43 Total: -33.79 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.06 Total: -13.33 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.10 Total: 17.56 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.53 -9.49 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601672971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.089 kcal (2) G-P(sol) polarization free energy of solvation -28.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.61 seconds