Wall clock time and date at job start Mon Mar 30 2020 02:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47501 * 2 1 4 4 H 1.08993 * 109.47290 * 55.00035 * 3 2 1 5 5 N 1.46497 * 109.47090 * 295.00007 * 3 2 1 6 6 C 1.34774 * 120.00234 * 84.99889 * 5 3 2 7 7 O 1.21618 * 119.99610 * 359.97438 * 6 5 3 8 8 C 1.47428 * 120.00477 * 180.02562 * 6 5 3 9 9 C 1.39227 * 120.28203 * 356.95999 * 8 6 5 10 10 C 1.38226 * 120.09245 * 180.28427 * 9 8 6 11 11 C 1.38819 * 120.67786 * 359.71317 * 10 9 8 12 12 C 1.37601 * 120.56523 * 359.97438 * 11 10 9 13 13 C 1.40701 * 119.88763 * 0.02562 * 12 11 10 14 14 C 1.40888 * 120.32971 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99755 * 145.83044 * 14 13 12 16 16 C 1.40270 * 120.00333 * 325.83097 * 14 13 12 17 17 N 1.30626 * 120.00028 * 340.90079 * 16 14 13 18 18 Si 1.86800 * 120.00207 * 160.89156 * 16 14 13 19 19 H 1.48499 * 109.47345 * 270.00824 * 18 16 14 20 20 H 1.48500 * 109.46924 * 30.00395 * 18 16 14 21 21 H 1.48492 * 109.47276 * 150.00043 * 18 16 14 22 22 C 1.53006 * 109.47083 * 175.00100 * 3 2 1 23 23 C 1.52998 * 117.49777 * 248.74593 * 22 3 2 24 24 C 1.53002 * 117.49763 * 180.08553 * 22 3 2 25 25 H 1.09002 * 109.47586 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46659 * 300.00580 * 1 2 3 27 27 H 1.09004 * 109.47010 * 59.99978 * 1 2 3 28 28 H 1.09004 * 109.47075 * 239.99473 * 2 1 3 29 29 H 1.09004 * 109.47010 * 120.00022 * 2 1 3 30 30 H 0.97004 * 120.00040 * 265.00618 * 5 3 2 31 31 H 1.08004 * 119.95726 * 359.97438 * 9 8 6 32 32 H 1.08003 * 119.65624 * 179.73750 * 10 9 8 33 33 H 1.07994 * 119.71839 * 180.02562 * 11 10 9 34 34 H 1.08005 * 120.05189 * 180.02562 * 12 11 10 35 35 H 0.97004 * 119.99592 * 354.75870 * 17 16 14 36 36 H 1.09004 * 115.54706 * 34.41813 * 22 3 2 37 37 H 1.09005 * 117.49981 * 0.02562 * 23 22 3 38 38 H 1.09002 * 117.50024 * 145.02149 * 23 22 3 39 39 H 1.08993 * 117.49788 * 214.97930 * 24 22 3 40 40 H 1.09001 * 117.49692 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8417 5 7 1.6525 2.0974 -1.2518 6 6 0.4353 2.6644 -1.3670 7 8 -0.3416 2.6318 -0.4318 8 6 0.0451 3.3231 -2.6269 9 6 0.9515 3.4184 -3.6793 10 6 0.5834 4.0420 -4.8567 11 6 -0.6898 4.5739 -5.0084 12 6 -1.6096 4.4894 -3.9885 13 6 -1.2602 3.8598 -2.7797 14 6 -2.1944 3.7685 -1.7291 15 1 -2.1988 2.9022 -1.0842 16 6 -3.1187 4.8027 -1.5206 17 7 -2.8983 5.9873 -2.0251 18 14 -4.6652 4.4861 -0.5217 19 1 -5.7531 4.0312 -1.4244 20 1 -4.3927 3.4366 0.4930 21 1 -5.0790 5.7384 0.1604 22 6 3.5649 1.4442 0.1257 23 6 4.1657 1.9735 1.4295 24 6 4.2705 2.8016 0.1463 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.2720 2.1230 -1.9978 31 1 1.9454 3.0090 -3.5739 32 1 1.2936 4.1158 -5.6671 33 1 -0.9611 5.0575 -5.9352 34 1 -2.5980 4.9058 -4.1156 35 1 -2.0611 6.1732 -2.4785 36 1 4.0781 0.6176 -0.3659 37 1 3.4746 2.3201 2.1979 38 1 5.0743 1.4954 1.7955 39 1 5.2480 2.8680 -0.3312 40 1 3.6484 3.6934 0.0699 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601672971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:38 Heat of formation + Delta-G solvation = -24.342294 kcal Electronic energy + Delta-G solvation = -21266.242395 eV Core-core repulsion = 18238.024544 eV Total energy + Delta-G solvation = -3028.217851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.06201 -39.33546 -38.12593 -35.92104 -35.29021 -33.41341 -31.60921 -31.07518 -28.02056 -26.93589 -24.27839 -23.24635 -22.84123 -22.57322 -21.45466 -21.03652 -19.86201 -18.07130 -17.39360 -16.60041 -16.37599 -15.95809 -15.83814 -15.70297 -15.46135 -15.08112 -14.50344 -14.34291 -13.98800 -13.69312 -13.54977 -13.16716 -12.91510 -12.68829 -12.57238 -12.43771 -12.36977 -12.07252 -12.01594 -11.92722 -11.72128 -11.45667 -11.27799 -11.08365 -10.95438 -10.20924 -9.82201 -9.58035 -9.47594 -9.07969 -6.44094 0.43622 0.91072 1.44642 1.60891 1.75080 2.29724 2.32814 2.35081 2.76502 3.06722 3.55434 3.58738 3.95244 4.10551 4.17585 4.21056 4.26572 4.31362 4.38525 4.44191 4.55553 4.75076 4.78732 4.87706 4.90940 4.96007 5.01506 5.02961 5.14390 5.18430 5.26102 5.35026 5.44030 5.49475 5.65800 5.71611 5.76886 5.92365 6.00071 6.22835 6.35254 6.74075 6.89094 6.99234 7.72660 8.05840 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016405 B = 0.006382 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.390858 B = 4386.028625 C = 5330.117507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C 0.175 3.825 4 H 0.051 0.949 5 N -0.720 5.720 6 C 0.560 3.440 7 O -0.568 6.568 8 C -0.281 4.281 9 C -0.043 4.043 10 C -0.245 4.245 11 C -0.074 4.074 12 C -0.227 4.227 13 C 0.096 3.904 14 C -0.508 4.508 15 H 0.082 0.918 16 C -0.003 4.003 17 N -0.821 5.821 18 Si 1.116 2.884 19 H -0.256 1.256 20 H -0.275 1.275 21 H -0.268 1.268 22 C -0.161 4.161 23 C -0.162 4.162 24 C -0.178 4.178 25 H 0.057 0.943 26 H 0.035 0.965 27 H 0.028 0.972 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.403 0.597 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.282 0.718 36 H 0.133 0.867 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.523 -8.403 1.645 15.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.157 4.157 3 C 0.071 3.929 4 H 0.069 0.931 5 N -0.373 5.373 6 C 0.353 3.647 7 O -0.448 6.448 8 C -0.286 4.286 9 C -0.062 4.062 10 C -0.264 4.264 11 C -0.092 4.092 12 C -0.246 4.246 13 C 0.092 3.908 14 C -0.536 4.536 15 H 0.100 0.900 16 C -0.218 4.218 17 N -0.445 5.445 18 Si 0.934 3.066 19 H -0.180 1.180 20 H -0.200 1.200 21 H -0.193 1.193 22 C -0.180 4.180 23 C -0.200 4.200 24 C -0.215 4.215 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.239 0.761 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.141 0.859 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.150 0.850 37 H 0.101 0.899 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.587 -7.677 2.832 13.381 hybrid contribution 1.282 -0.244 -0.968 1.625 sum 11.869 -7.921 1.864 14.390 Atomic orbital electron populations 1.21732 0.97127 1.00122 1.00926 1.21863 0.94796 0.95743 1.03287 1.20501 0.92858 0.93121 0.86433 0.93088 1.45825 1.16019 1.58694 1.16794 1.18263 0.81414 0.77551 0.87473 1.90673 1.52036 1.60391 1.41746 1.19895 0.95656 1.16851 0.96163 1.21160 0.97512 0.95287 0.92241 1.20799 0.97449 1.08801 0.99354 1.21139 0.93955 0.96747 0.97404 1.21202 0.99251 1.09550 0.94633 1.17900 0.90982 0.89294 0.92636 1.21096 1.12840 1.06785 1.12889 0.89998 1.28412 1.04983 0.91614 0.96809 1.70469 1.26324 1.21891 1.25856 0.83004 0.71166 0.76914 0.75523 1.18037 1.20002 1.19292 1.22509 0.92342 0.99244 1.03889 1.23059 1.03216 1.03183 0.90520 1.22928 1.02305 0.93916 1.02319 0.92366 0.94621 0.95282 0.90656 0.89225 0.76084 0.84859 0.84708 0.85945 0.89452 0.90565 0.84958 0.89880 0.86035 0.86543 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 8.51 71.98 0.61 -4.28 16 2 C -0.12 -3.14 5.59 30.59 0.17 -2.97 16 3 C 0.18 5.09 2.45 44.99 0.11 5.20 16 4 H 0.05 1.83 7.33 -2.39 -0.02 1.81 16 5 N -0.72 -24.31 4.86 -445.80 -2.17 -26.48 16 6 C 0.56 25.75 6.30 86.66 0.55 26.30 16 7 O -0.57 -30.35 10.69 -4.09 -0.04 -30.39 16 8 C -0.28 -13.63 5.92 -19.70 -0.12 -13.75 16 9 C -0.04 -1.71 9.53 22.50 0.21 -1.50 16 10 C -0.25 -9.40 10.03 22.41 0.22 -9.17 16 11 C -0.07 -3.16 10.01 22.26 0.22 -2.94 16 12 C -0.23 -11.66 7.86 22.72 0.18 -11.48 16 13 C 0.10 5.29 5.17 -21.11 -0.11 5.18 16 14 C -0.51 -29.61 7.66 23.41 0.18 -29.43 16 15 H 0.08 5.05 5.92 -2.91 -0.02 5.03 16 16 C 0.00 -0.18 5.04 85.37 0.43 0.25 16 17 N -0.82 -46.66 12.57 21.88 0.27 -46.39 16 18 Si 1.12 48.17 29.98 68.60 2.06 50.22 16 19 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 22 C -0.16 -3.29 5.22 -10.79 -0.06 -3.34 16 23 C -0.16 -3.00 10.18 30.62 0.31 -2.69 16 24 C -0.18 -3.63 10.13 30.62 0.31 -3.32 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 26 H 0.03 1.36 7.84 -2.39 -0.02 1.34 16 27 H 0.03 1.21 5.64 -2.39 -0.01 1.19 16 28 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.40 11.36 6.64 -92.71 -0.62 10.74 16 31 H 0.13 4.06 6.41 -2.91 -0.02 4.04 16 32 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 33 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 34 H 0.09 4.71 6.93 -2.91 -0.02 4.69 16 35 H 0.28 16.53 6.54 -92.71 -0.61 15.92 16 36 H 0.13 2.07 8.11 -2.38 -0.02 2.06 16 37 H 0.08 1.75 8.05 -2.38 -0.02 1.73 16 38 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -68.12 323.41 3.94 -64.18 By element: Atomic # 1 Polarization: 36.20 SS G_CDS: 0.59 Total: 36.79 kcal Atomic # 6 Polarization: -51.17 SS G_CDS: 3.23 Total: -47.94 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -1.89 Total: -72.86 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.04 Total: -30.39 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.06 Total: 50.22 kcal Total: -68.12 3.94 -64.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601672971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.837 kcal (2) G-P(sol) polarization free energy of solvation -68.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds