Wall clock time and date at job start Mon Mar 30 2020 02:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47003 * 2 1 4 4 H 1.08997 * 109.47392 * 305.00163 * 3 2 1 5 5 N 1.46500 * 109.46989 * 65.00177 * 3 2 1 6 6 C 1.34776 * 120.00021 * 204.99864 * 5 3 2 7 7 O 1.21606 * 120.00255 * 359.97438 * 6 5 3 8 8 C 1.47437 * 120.00321 * 180.02562 * 6 5 3 9 9 C 1.39228 * 120.28136 * 355.70248 * 8 6 5 10 10 C 1.38214 * 120.09644 * 180.28015 * 9 8 6 11 11 C 1.38832 * 120.66912 * 359.69790 * 10 9 8 12 12 C 1.37596 * 120.57508 * 0.02562 * 11 10 9 13 13 C 1.40701 * 119.87986 * 0.02562 * 12 11 10 14 14 C 1.40885 * 120.32863 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00261 * 216.32578 * 14 13 12 16 16 C 1.40272 * 120.00127 * 36.33029 * 14 13 12 17 17 N 1.30627 * 120.00434 * 190.50812 * 16 14 13 18 18 Si 1.86805 * 119.99712 * 10.50825 * 16 14 13 19 19 H 1.48501 * 109.46943 * 267.22699 * 18 16 14 20 20 H 1.48498 * 109.47138 * 27.22658 * 18 16 14 21 21 H 1.48502 * 109.47036 * 147.22609 * 18 16 14 22 22 C 1.52996 * 109.47312 * 184.99993 * 3 2 1 23 23 C 1.53005 * 117.50174 * 248.75357 * 22 3 2 24 24 C 1.52999 * 117.50398 * 180.09130 * 22 3 2 25 25 H 1.08998 * 109.47183 * 299.99927 * 1 2 3 26 26 H 1.09003 * 109.47158 * 59.99823 * 1 2 3 27 27 H 1.08996 * 109.47189 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46669 * 240.00117 * 2 1 3 29 29 H 1.08998 * 109.46694 * 120.00225 * 2 1 3 30 30 H 0.97001 * 120.00352 * 24.99463 * 5 3 2 31 31 H 1.08004 * 119.95003 * 359.97438 * 9 8 6 32 32 H 1.07992 * 119.67137 * 179.72088 * 10 9 8 33 33 H 1.08005 * 119.70898 * 180.02562 * 11 10 9 34 34 H 1.07993 * 120.05782 * 180.02562 * 12 11 10 35 35 H 0.96997 * 119.99952 * 179.97438 * 17 16 14 36 36 H 1.09001 * 115.54504 * 34.41446 * 22 3 2 37 37 H 1.08999 * 117.49147 * 359.97438 * 23 22 3 38 38 H 1.08993 * 117.50021 * 145.01379 * 23 22 3 39 39 H 1.09001 * 117.49683 * 214.98607 * 24 22 3 40 40 H 1.08999 * 117.49449 * 359.96890 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6524 2.0974 1.2518 6 6 1.5256 3.4384 1.2997 7 8 1.7333 4.1047 0.3038 8 6 1.1361 4.0976 2.5596 9 6 0.8112 3.3362 3.6791 10 6 0.4410 3.9581 4.8566 11 6 0.3941 5.3430 4.9416 12 6 0.7150 6.1223 3.8540 13 6 1.0940 5.5140 2.6432 14 6 1.4240 6.3028 1.5235 15 1 1.1526 5.9729 0.5316 16 6 2.1052 7.5167 1.6969 17 7 2.2311 8.3441 0.6940 18 14 2.8324 7.9500 3.3621 19 1 1.8485 8.7447 4.1403 20 1 3.1562 6.7029 4.1005 21 1 4.0707 8.7467 3.1694 22 6 3.5648 1.4444 -0.1257 23 6 4.3734 1.9002 1.0906 24 6 4.2707 2.8017 -0.1422 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.4870 1.5660 2.0463 31 1 0.8438 2.2580 3.6258 32 1 0.1861 3.3608 5.7194 33 1 0.1031 5.8128 5.8696 34 1 0.6760 7.1989 3.9295 35 1 2.7018 9.1837 0.8141 36 1 3.9866 0.6502 -0.7416 37 1 3.8190 2.1990 1.9802 38 1 5.3273 1.4061 1.2746 39 1 5.1571 2.9004 -0.7688 40 1 3.6487 3.6934 -0.0640 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601672972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:54 Heat of formation + Delta-G solvation = 3.885579 kcal Electronic energy + Delta-G solvation = -21533.555403 eV Core-core repulsion = 18506.561605 eV Total energy + Delta-G solvation = -3026.993799 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 3.78 seconds Orbital eigenvalues (eV) -39.64836 -37.74128 -36.17895 -34.33943 -33.65147 -31.96313 -30.45653 -29.80433 -26.74597 -25.25948 -22.52586 -22.09326 -21.51922 -21.19520 -19.71973 -19.38053 -17.53194 -16.65195 -15.94240 -15.60730 -15.20700 -14.27434 -14.09754 -14.02503 -13.92353 -13.37594 -13.19577 -12.76685 -12.54631 -12.38876 -12.08881 -11.94439 -11.48729 -11.25103 -11.17561 -11.04060 -10.94268 -10.81846 -10.67128 -10.42328 -10.16783 -9.86336 -9.80496 -9.51723 -9.25395 -8.47832 -8.23210 -7.81822 -7.58582 -6.89757 -4.48171 2.10662 2.60343 3.08584 3.17498 3.28822 3.88147 3.95685 4.01190 4.28301 4.59590 4.84083 5.15430 5.18975 5.39656 5.42265 5.43312 5.53852 5.71895 5.77177 5.86268 5.93897 5.96116 6.00180 6.04240 6.09585 6.25229 6.31661 6.36757 6.45887 6.50791 6.57924 6.79956 6.95184 7.09460 7.18997 7.26176 7.40025 7.59357 7.76501 8.01731 8.36128 8.48757 8.64612 8.87357 9.39742 10.06598 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.006979 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.187530 B = 4011.360490 C = 4754.277913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.178 3.822 4 H 0.087 0.913 5 N -0.739 5.739 6 C 0.563 3.437 7 O -0.524 6.524 8 C -0.249 4.249 9 C -0.042 4.042 10 C -0.255 4.255 11 C -0.066 4.066 12 C -0.226 4.226 13 C 0.117 3.883 14 C -0.401 4.401 15 H 0.125 0.875 16 C 0.080 3.920 17 N -0.793 5.793 18 Si 0.905 3.095 19 H -0.269 1.269 20 H -0.243 1.243 21 H -0.289 1.289 22 C -0.172 4.172 23 C -0.177 4.177 24 C -0.183 4.183 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.390 0.610 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.286 0.714 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 -11.993 2.030 12.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C 0.073 3.927 4 H 0.105 0.895 5 N -0.393 5.393 6 C 0.357 3.643 7 O -0.402 6.402 8 C -0.254 4.254 9 C -0.061 4.061 10 C -0.274 4.274 11 C -0.084 4.084 12 C -0.245 4.245 13 C 0.112 3.888 14 C -0.428 4.428 15 H 0.142 0.858 16 C -0.141 4.141 17 N -0.416 5.416 18 Si 0.731 3.269 19 H -0.195 1.195 20 H -0.166 1.166 21 H -0.216 1.216 22 C -0.192 4.192 23 C -0.214 4.214 24 C -0.220 4.220 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.225 0.775 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.935 -11.261 1.106 11.354 hybrid contribution 0.394 0.013 1.152 1.217 sum 1.328 -11.248 2.258 11.549 Atomic orbital electron populations 1.21764 0.95472 1.01086 1.02593 1.21744 0.96252 0.95898 1.02377 1.20312 0.91389 0.92377 0.88620 0.89498 1.46067 1.73367 1.07521 1.12384 1.18306 0.76418 0.80650 0.88966 1.90658 1.50015 1.62956 1.36527 1.19435 1.18636 0.93958 0.93398 1.20775 0.95532 0.96868 0.92898 1.20278 1.15269 0.94161 0.97720 1.20737 0.97078 0.93974 0.96655 1.21154 1.09880 0.98265 0.95212 1.17550 0.88688 0.90647 0.91888 1.20192 1.26644 0.98862 0.97056 0.85760 1.26368 0.94842 0.94358 0.98515 1.69568 1.30989 1.07881 1.33144 0.86414 0.78163 0.80127 0.82157 1.19496 1.16575 1.21624 1.22765 0.94589 0.99097 1.02745 1.22889 1.00537 1.04524 0.93484 1.23414 1.02428 0.96110 1.00042 0.92272 0.92639 0.93039 0.91044 0.91711 0.77535 0.88782 0.88616 0.88649 0.87853 0.90289 0.88291 0.88444 0.90082 0.90153 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.80 37.16 0.36 -1.31 16 2 C -0.12 -1.38 5.46 -26.73 -0.15 -1.53 16 3 C 0.18 2.64 2.43 -67.93 -0.17 2.48 16 4 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 5 N -0.74 -12.23 3.02 -54.88 -0.17 -12.40 16 6 C 0.56 12.19 6.56 -12.51 -0.08 12.11 16 7 O -0.52 -13.15 10.56 5.27 0.06 -13.10 16 8 C -0.25 -5.70 5.92 -104.36 -0.62 -6.32 16 9 C -0.04 -0.82 9.52 -39.22 -0.37 -1.19 16 10 C -0.25 -4.97 10.03 -39.37 -0.39 -5.36 16 11 C -0.07 -1.36 10.01 -39.60 -0.40 -1.76 16 12 C -0.23 -5.32 7.00 -38.89 -0.27 -5.59 16 13 C 0.12 2.97 5.03 -106.55 -0.54 2.44 16 14 C -0.40 -11.08 8.31 -37.82 -0.31 -11.39 16 15 H 0.12 3.79 5.96 -52.49 -0.31 3.48 16 16 C 0.08 2.11 5.47 -17.30 -0.09 2.02 16 17 N -0.79 -21.42 13.92 55.56 0.77 -20.64 16 18 Si 0.91 20.73 24.52 -169.99 -4.17 16.56 16 19 H -0.27 -5.88 6.76 56.52 0.38 -5.50 16 20 H -0.24 -5.70 6.73 56.52 0.38 -5.32 16 21 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 22 C -0.17 -2.54 5.70 -90.62 -0.52 -3.06 16 23 C -0.18 -2.77 9.74 -26.69 -0.26 -3.03 16 24 C -0.18 -3.23 9.82 -26.69 -0.26 -3.49 16 25 H 0.06 0.71 7.75 -51.93 -0.40 0.30 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.39 5.61 6.65 -40.82 -0.27 5.34 16 31 H 0.09 1.50 6.42 -52.48 -0.34 1.16 16 32 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.10 1.70 8.06 -52.48 -0.42 1.27 16 34 H 0.10 2.41 5.01 -52.49 -0.26 2.15 16 35 H 0.29 6.98 8.29 -40.82 -0.34 6.64 16 36 H 0.10 1.24 8.11 -51.93 -0.42 0.82 16 37 H 0.10 1.67 6.67 -51.93 -0.35 1.33 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.13 2.82 5.01 -51.93 -0.26 2.56 16 LS Contribution 315.85 15.07 4.76 4.76 Total: -1.00 -28.62 315.85 -8.38 -37.00 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -5.57 Total: 12.82 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -4.07 Total: -25.00 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.61 Total: -33.04 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.06 Total: -13.10 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.17 Total: 16.56 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.62 -8.38 -37.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601672972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.884 kcal (2) G-P(sol) polarization free energy of solvation -28.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.78 seconds