Wall clock time and date at job start Mon Mar 30 2020 01:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.46996 * 2 1 4 4 C 1.53001 * 109.47111 * 120.00499 * 2 1 3 5 5 C 1.53488 * 114.21229 * 59.99596 * 4 2 1 6 6 N 1.47060 * 87.98696 * 139.65692 * 5 4 2 7 7 C 1.34776 * 136.05772 * 152.85117 * 6 5 4 8 8 O 1.21549 * 120.00222 * 359.77257 * 7 6 5 9 9 C 1.47892 * 119.99952 * 179.78156 * 7 6 5 10 10 C 1.39919 * 120.02531 * 352.99814 * 9 7 6 11 11 C 1.38329 * 120.35421 * 180.28138 * 10 9 7 12 12 C 1.37753 * 120.41617 * 359.72166 * 11 10 9 13 13 C 1.40744 * 120.03727 * 359.97438 * 12 11 10 14 14 C 1.41437 * 120.17982 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00129 * 155.33400 * 14 13 12 16 16 C 1.39939 * 119.99760 * 335.33729 * 14 13 12 17 17 N 1.30826 * 119.99928 * 160.02641 * 16 14 13 18 18 Si 1.86803 * 120.00154 * 340.03146 * 16 14 13 19 19 H 1.48497 * 109.47124 * 95.34680 * 18 16 14 20 20 H 1.48494 * 109.47081 * 215.35078 * 18 16 14 21 21 H 1.48504 * 109.46987 * 335.34834 * 18 16 14 22 22 C 1.38994 * 120.02158 * 172.72169 * 9 7 6 23 23 C 1.47064 * 87.88386 * 333.10039 * 6 5 4 24 24 H 1.08999 * 109.47061 * 299.99844 * 1 2 3 25 25 H 1.08998 * 109.47505 * 60.00239 * 1 2 3 26 26 H 1.09000 * 109.47407 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47061 * 240.00156 * 2 1 3 28 28 H 1.09005 * 109.46920 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47384 * 299.99730 * 3 2 1 30 30 H 1.08998 * 109.47639 * 60.00700 * 3 2 1 31 31 H 1.09002 * 113.27840 * 286.93100 * 4 2 1 32 32 H 1.09003 * 113.46458 * 24.87405 * 5 4 2 33 33 H 1.09003 * 113.52231 * 254.45020 * 5 4 2 34 34 H 1.07997 * 119.82270 * 0.02562 * 10 9 7 35 35 H 1.08009 * 119.78897 * 179.74347 * 11 10 9 36 36 H 1.07995 * 119.98057 * 179.97438 * 12 11 10 37 37 H 0.97003 * 119.99626 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.20595 * 359.97438 * 22 9 7 39 39 H 1.09009 * 113.46721 * 141.68146 * 23 6 5 40 40 H 1.08994 * 113.47281 * 272.11554 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5898 -2.1846 1.3590 6 7 2.9389 -2.5089 1.8463 7 6 3.4836 -3.4537 2.6382 8 8 2.7785 -4.3085 3.1378 9 6 4.9392 -3.4503 2.8995 10 6 5.7718 -2.5602 2.2123 11 6 7.1350 -2.5552 2.4471 12 6 7.6880 -3.4219 3.3640 13 6 6.8655 -4.3200 4.0695 14 6 7.4299 -5.2109 5.0120 15 1 6.8242 -5.6009 5.8165 16 6 8.7734 -5.5868 4.9020 17 7 9.4040 -6.0719 5.9405 18 14 9.6663 -5.3958 3.2724 19 1 10.4017 -4.1058 3.2591 20 1 10.6269 -6.5150 3.1002 21 1 8.6801 -5.4148 2.1623 22 6 5.4804 -4.3273 3.8322 23 6 3.4311 -1.3448 1.0943 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.9086 -0.1436 2.1641 32 1 1.3547 -2.6398 0.3968 33 1 0.8093 -2.3450 2.1028 34 1 5.3485 -1.8763 1.4916 35 1 7.7698 -1.8671 1.9085 36 1 8.7532 -3.4123 3.5415 37 1 10.3351 -6.3329 5.8641 38 1 4.8409 -5.0127 4.3685 39 1 4.2135 -0.7916 1.6140 40 1 3.6916 -1.5740 0.0611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611079154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:52 Heat of formation + Delta-G solvation = 13.938609 kcal Electronic energy + Delta-G solvation = -20477.592211 eV Core-core repulsion = 17451.034345 eV Total energy + Delta-G solvation = -3026.557867 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52278 -38.28164 -37.02864 -34.82576 -33.71144 -30.95421 -30.05799 -28.63362 -27.67951 -26.06143 -24.88297 -23.67027 -21.80641 -20.67095 -20.05855 -19.16339 -17.62572 -16.25313 -16.14028 -15.70058 -15.22800 -14.98953 -14.52486 -13.95205 -13.79813 -13.61530 -13.36043 -12.98149 -12.73033 -12.67623 -12.53023 -12.25869 -12.16256 -12.00228 -11.69468 -11.38779 -11.10301 -10.99898 -10.88075 -10.74826 -10.57810 -10.33577 -9.87192 -9.64206 -9.41368 -9.06530 -8.50153 -7.84496 -7.78158 -7.04788 -4.55645 1.93803 2.53501 3.03446 3.10500 3.17034 3.25122 3.60131 3.90934 4.12843 4.43270 4.58487 4.67618 4.90827 5.04369 5.13587 5.26204 5.36577 5.40032 5.41301 5.42513 5.52471 5.60820 5.63336 5.68352 5.85776 5.87305 5.96306 6.02107 6.08867 6.14869 6.23397 6.41774 6.68800 6.71648 6.98994 7.22984 7.44183 7.53041 7.74462 7.90100 8.06357 8.25917 8.53446 8.67152 8.71517 9.96929 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.035827 B = 0.004000 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.344769 B = 6997.742219 C = 7527.427491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.147 4.147 4 C -0.124 4.124 5 C 0.109 3.891 6 N -0.646 5.646 7 C 0.592 3.408 8 O -0.547 6.547 9 C -0.101 4.101 10 C -0.233 4.233 11 C -0.082 4.082 12 C -0.229 4.229 13 C 0.082 3.918 14 C -0.438 4.438 15 H 0.093 0.907 16 C 0.083 3.917 17 N -0.799 5.799 18 Si 0.916 3.084 19 H -0.270 1.270 20 H -0.291 1.291 21 H -0.243 1.243 22 C -0.141 4.141 23 C 0.103 3.897 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.287 0.713 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.067 12.627 -12.223 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 C -0.204 4.204 4 C -0.143 4.143 5 C -0.014 4.014 6 N -0.382 5.382 7 C 0.386 3.614 8 O -0.426 6.426 9 C -0.104 4.104 10 C -0.252 4.252 11 C -0.100 4.100 12 C -0.249 4.249 13 C 0.079 3.921 14 C -0.466 4.466 15 H 0.111 0.889 16 C -0.137 4.137 17 N -0.422 5.422 18 Si 0.742 3.258 19 H -0.196 1.196 20 H -0.218 1.218 21 H -0.167 1.167 22 C -0.161 4.161 23 C -0.020 4.020 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.098 0.902 38 H 0.132 0.868 39 H 0.107 0.893 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.138 11.824 -11.608 19.425 hybrid contribution 0.654 -0.017 -0.592 0.882 sum -9.484 11.807 -12.199 19.447 Atomic orbital electron populations 1.21826 0.94921 1.01969 1.01775 1.21030 0.95967 0.96355 0.96926 1.21820 1.01331 0.95526 1.01732 1.23104 0.96543 0.95097 0.99532 1.22915 0.86935 0.92434 0.99131 1.49386 1.10692 1.29751 1.48335 1.18434 0.88275 0.78198 0.76524 1.90704 1.63430 1.36871 1.51562 1.19333 0.89878 1.00080 1.01060 1.20916 0.93708 1.04224 1.06353 1.20509 0.94358 0.97885 0.97256 1.21127 0.98670 1.00957 1.04101 1.17661 0.91338 0.91869 0.91202 1.19557 0.94985 1.22420 1.09619 0.88864 1.26217 0.97184 0.91959 0.98374 1.69703 1.11739 1.30326 1.30454 0.86273 0.79146 0.77116 0.83215 1.19626 1.21840 1.16665 1.21193 0.95091 1.00080 0.99761 1.23157 0.97078 0.85140 0.96659 0.92553 0.92691 0.92485 0.90775 0.92375 0.92724 0.92583 0.87855 0.90307 0.90795 0.87203 0.88404 0.88036 0.90223 0.86816 0.89277 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.00 37.16 0.33 -0.64 16 2 C -0.08 -0.60 2.74 -90.63 -0.25 -0.85 16 3 C -0.15 -0.97 9.19 37.15 0.34 -0.63 16 4 C -0.12 -1.18 3.45 -90.25 -0.31 -1.49 16 5 C 0.11 1.32 7.27 -8.53 -0.06 1.26 16 6 N -0.65 -10.47 3.68 -186.55 -0.69 -11.16 16 7 C 0.59 12.58 8.01 -12.31 -0.10 12.49 16 8 O -0.55 -13.30 17.13 5.32 0.09 -13.21 16 9 C -0.10 -2.27 5.87 -105.04 -0.62 -2.88 16 10 C -0.23 -4.69 9.17 -38.92 -0.36 -5.04 16 11 C -0.08 -1.71 10.01 -39.73 -0.40 -2.11 16 12 C -0.23 -5.46 7.18 -38.81 -0.28 -5.74 16 13 C 0.08 2.12 5.22 -106.87 -0.56 1.57 16 14 C -0.44 -11.95 9.58 -37.73 -0.36 -12.31 16 15 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 16 C 0.08 2.16 5.41 -17.34 -0.09 2.07 16 17 N -0.80 -21.13 13.93 55.55 0.77 -20.35 16 18 Si 0.92 20.60 24.43 -169.99 -4.15 16.45 16 19 H -0.27 -5.81 6.64 56.52 0.38 -5.44 16 20 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.24 -5.63 6.80 56.52 0.38 -5.25 16 22 C -0.14 -3.52 9.34 -38.44 -0.36 -3.88 16 23 C 0.10 1.22 5.90 -8.66 -0.05 1.16 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.39 7.48 -51.93 -0.39 0.00 16 27 H 0.07 0.52 7.90 -51.93 -0.41 0.11 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.11 1.82 3.93 -52.49 -0.21 1.61 16 35 H 0.10 1.73 8.06 -52.48 -0.42 1.30 16 36 H 0.10 2.39 4.14 -52.49 -0.22 2.17 16 37 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 38 H 0.11 2.89 7.66 -52.49 -0.40 2.49 16 39 H 0.09 1.08 6.37 -51.92 -0.33 0.74 16 40 H 0.08 0.86 7.94 -51.93 -0.41 0.44 16 LS Contribution 321.99 15.07 4.85 4.85 Total: -1.00 -30.26 321.99 -8.01 -38.27 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.77 Total: 2.19 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -3.12 Total: -17.04 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.09 Total: -31.51 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.15 Total: 16.45 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.26 -8.01 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611079154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.212 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds