Wall clock time and date at job start Mon Mar 30 2020 01:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.46996 * 2 1 4 4 C 1.53001 * 109.47111 * 120.00499 * 2 1 3 5 5 C 1.53488 * 114.21229 * 59.99596 * 4 2 1 6 6 N 1.47060 * 87.98696 * 139.65692 * 5 4 2 7 7 C 1.34776 * 136.05772 * 152.85117 * 6 5 4 8 8 O 1.21549 * 120.00222 * 359.77257 * 7 6 5 9 9 C 1.47892 * 119.99952 * 179.78156 * 7 6 5 10 10 C 1.39919 * 120.02531 * 352.99814 * 9 7 6 11 11 C 1.38329 * 120.35421 * 180.28138 * 10 9 7 12 12 C 1.37753 * 120.41617 * 359.72166 * 11 10 9 13 13 C 1.40744 * 120.03727 * 359.97438 * 12 11 10 14 14 C 1.41437 * 120.17982 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00129 * 155.33400 * 14 13 12 16 16 C 1.39939 * 119.99760 * 335.33729 * 14 13 12 17 17 N 1.30826 * 119.99928 * 160.02641 * 16 14 13 18 18 Si 1.86803 * 120.00154 * 340.03146 * 16 14 13 19 19 H 1.48497 * 109.47124 * 95.34680 * 18 16 14 20 20 H 1.48494 * 109.47081 * 215.35078 * 18 16 14 21 21 H 1.48504 * 109.46987 * 335.34834 * 18 16 14 22 22 C 1.38994 * 120.02158 * 172.72169 * 9 7 6 23 23 C 1.47064 * 87.88386 * 333.10039 * 6 5 4 24 24 H 1.08999 * 109.47061 * 299.99844 * 1 2 3 25 25 H 1.08998 * 109.47505 * 60.00239 * 1 2 3 26 26 H 1.09000 * 109.47407 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47061 * 240.00156 * 2 1 3 28 28 H 1.09005 * 109.46920 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47384 * 299.99730 * 3 2 1 30 30 H 1.08998 * 109.47639 * 60.00700 * 3 2 1 31 31 H 1.09002 * 113.27840 * 286.93100 * 4 2 1 32 32 H 1.09003 * 113.46458 * 24.87405 * 5 4 2 33 33 H 1.09003 * 113.52231 * 254.45020 * 5 4 2 34 34 H 1.07997 * 119.82270 * 0.02562 * 10 9 7 35 35 H 1.08009 * 119.78897 * 179.74347 * 11 10 9 36 36 H 1.07995 * 119.98057 * 179.97438 * 12 11 10 37 37 H 0.97003 * 119.99626 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.20595 * 359.97438 * 22 9 7 39 39 H 1.09009 * 113.46721 * 141.68146 * 23 6 5 40 40 H 1.08994 * 113.47281 * 272.11554 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5898 -2.1846 1.3590 6 7 2.9389 -2.5089 1.8463 7 6 3.4836 -3.4537 2.6382 8 8 2.7785 -4.3085 3.1378 9 6 4.9392 -3.4503 2.8995 10 6 5.7718 -2.5602 2.2123 11 6 7.1350 -2.5552 2.4471 12 6 7.6880 -3.4219 3.3640 13 6 6.8655 -4.3200 4.0695 14 6 7.4299 -5.2109 5.0120 15 1 6.8242 -5.6009 5.8165 16 6 8.7734 -5.5868 4.9020 17 7 9.4040 -6.0719 5.9405 18 14 9.6663 -5.3958 3.2724 19 1 10.4017 -4.1058 3.2591 20 1 10.6269 -6.5150 3.1002 21 1 8.6801 -5.4148 2.1623 22 6 5.4804 -4.3273 3.8322 23 6 3.4311 -1.3448 1.0943 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.9086 -0.1436 2.1641 32 1 1.3547 -2.6398 0.3968 33 1 0.8093 -2.3450 2.1028 34 1 5.3485 -1.8763 1.4916 35 1 7.7698 -1.8671 1.9085 36 1 8.7532 -3.4123 3.5415 37 1 10.3351 -6.3329 5.8641 38 1 4.8409 -5.0127 4.3685 39 1 4.2135 -0.7916 1.6140 40 1 3.6916 -1.5740 0.0611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611079154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:51 Heat of formation + Delta-G solvation = -4.582650 kcal Electronic energy + Delta-G solvation = -20478.395353 eV Core-core repulsion = 17451.034345 eV Total energy + Delta-G solvation = -3027.361009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.73360 -39.82676 -38.72812 -35.75163 -35.49482 -32.74350 -31.84120 -29.91717 -28.32483 -27.37895 -26.33863 -25.01026 -23.10088 -22.47863 -20.91384 -20.53614 -19.28488 -17.89545 -17.76043 -16.87956 -16.79983 -16.33859 -15.77894 -15.48536 -15.12102 -14.90644 -14.56434 -14.46508 -14.17867 -13.81513 -13.69490 -13.45915 -13.28018 -13.07391 -12.86381 -12.79031 -12.75142 -12.35191 -12.07956 -11.81969 -11.72238 -11.52990 -11.45197 -11.17468 -11.12670 -10.66317 -9.88979 -9.68197 -9.52076 -8.97751 -6.58514 0.15156 0.71970 1.22594 1.40625 1.47000 1.80887 1.90269 2.09888 2.59973 3.25644 3.43501 3.58557 3.86349 4.03963 4.18537 4.23766 4.35959 4.41180 4.48703 4.52590 4.56634 4.58767 4.73120 4.78442 4.83072 4.88247 4.92284 4.96569 5.10821 5.16241 5.20096 5.30677 5.37254 5.40004 5.54627 5.61850 5.64081 5.69501 5.80465 6.09730 6.26410 6.60680 6.65415 6.69350 7.11526 8.10997 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.035827 B = 0.004000 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.344769 B = 6997.742219 C = 7527.427491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.076 4.076 3 C -0.147 4.147 4 C -0.099 4.099 5 C 0.101 3.899 6 N -0.649 5.649 7 C 0.582 3.418 8 O -0.596 6.596 9 C -0.108 4.108 10 C -0.201 4.201 11 C -0.079 4.079 12 C -0.233 4.233 13 C 0.068 3.932 14 C -0.486 4.486 15 H 0.049 0.951 16 C 0.045 3.955 17 N -0.842 5.842 18 Si 0.973 3.027 19 H -0.244 1.244 20 H -0.277 1.277 21 H -0.253 1.253 22 C -0.176 4.176 23 C 0.093 3.907 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.108 0.892 37 H 0.298 0.702 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 16.243 -16.448 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.204 4.204 4 C -0.118 4.118 5 C -0.021 4.021 6 N -0.382 5.382 7 C 0.375 3.625 8 O -0.479 6.479 9 C -0.111 4.111 10 C -0.220 4.220 11 C -0.097 4.097 12 C -0.252 4.252 13 C 0.065 3.935 14 C -0.515 4.515 15 H 0.067 0.933 16 C -0.171 4.171 17 N -0.467 5.467 18 Si 0.795 3.205 19 H -0.169 1.169 20 H -0.203 1.203 21 H -0.176 1.176 22 C -0.197 4.197 23 C -0.028 4.028 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.175 0.825 35 H 0.167 0.833 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.936 15.504 -15.860 24.303 hybrid contribution 0.336 -0.948 0.608 1.175 sum -9.600 14.555 -15.252 23.166 Atomic orbital electron populations 1.21841 0.94541 1.01972 1.02282 1.21006 0.96200 0.96592 0.95708 1.21824 1.01496 0.94890 1.02192 1.22967 0.94475 0.93443 1.00928 1.23292 0.84884 0.94358 0.99565 1.49501 1.13272 1.28761 1.46664 1.18265 0.87670 0.78981 0.77621 1.90671 1.64107 1.39221 1.53876 1.19648 0.91545 0.99668 1.00192 1.21529 0.93339 1.02404 1.04756 1.21064 0.95184 0.97335 0.96081 1.21360 0.98888 1.00787 1.04187 1.17747 0.91887 0.92271 0.91562 1.19505 0.96004 1.25488 1.10463 0.93285 1.26977 0.97207 0.91312 1.01557 1.69726 1.12683 1.32131 1.32182 0.85413 0.78034 0.78703 0.78304 1.16899 1.20331 1.17650 1.21109 0.94978 1.01773 1.01809 1.23579 0.98570 0.83191 0.97444 0.92758 0.91595 0.92770 0.89666 0.92107 0.91755 0.92777 0.87931 0.88173 0.91722 0.82508 0.83285 0.87439 0.89180 0.89732 0.88745 0.87047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.00 71.98 0.65 -0.79 16 2 C -0.08 -0.75 2.74 -10.80 -0.03 -0.78 16 3 C -0.15 -1.28 9.19 71.98 0.66 -0.62 16 4 C -0.10 -1.50 3.45 -10.55 -0.04 -1.53 16 5 C 0.10 2.17 7.27 83.17 0.60 2.77 16 6 N -0.65 -19.44 3.68 -862.38 -3.18 -22.61 16 7 C 0.58 24.68 8.01 86.80 0.70 25.38 16 8 O -0.60 -30.20 17.13 -3.87 -0.07 -30.26 16 9 C -0.11 -4.80 5.87 -20.13 -0.12 -4.92 16 10 C -0.20 -7.31 9.17 22.70 0.21 -7.10 16 11 C -0.08 -2.94 10.01 22.18 0.22 -2.72 16 12 C -0.23 -10.72 7.18 22.77 0.16 -10.56 16 13 C 0.07 3.64 5.22 -21.32 -0.11 3.53 16 14 C -0.49 -28.60 9.58 23.47 0.22 -28.38 16 15 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 16 C 0.04 2.45 5.41 85.25 0.46 2.91 16 17 N -0.84 -46.72 13.93 21.82 0.30 -46.42 16 18 Si 0.97 42.09 24.43 68.60 1.68 43.77 16 19 H -0.24 -9.50 6.64 99.48 0.66 -8.84 16 20 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.25 -11.20 6.80 99.48 0.68 -10.52 16 22 C -0.18 -9.29 9.34 23.01 0.21 -9.08 16 23 C 0.09 1.75 5.90 83.08 0.49 2.24 16 24 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.05 0.56 7.48 -2.39 -0.02 0.54 16 27 H 0.09 0.73 7.90 -2.39 -0.02 0.71 16 28 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16 31 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 1.79 8.10 -2.39 -0.02 1.77 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.16 4.19 3.93 -2.91 -0.01 4.18 16 35 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 36 H 0.11 4.80 4.14 -2.91 -0.01 4.79 16 37 H 0.30 14.61 8.30 -92.71 -0.77 13.84 16 38 H 0.08 4.80 7.66 -2.91 -0.02 4.78 16 39 H 0.09 1.72 6.37 -2.38 -0.02 1.71 16 40 H 0.11 1.58 7.94 -2.39 -0.02 1.56 16 Total: -1.00 -72.33 321.99 3.99 -68.33 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.96 Total: 16.86 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 4.30 Total: -29.67 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -2.87 Total: -69.03 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.07 Total: -30.26 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.68 Total: 43.77 kcal Total: -72.33 3.99 -68.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611079154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.751 kcal (2) G-P(sol) polarization free energy of solvation -72.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds