Wall clock time and date at job start Mon Mar 30 2020 02:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47151 * 2 1 4 4 N 1.46903 * 109.46811 * 119.99952 * 2 1 3 5 5 C 1.46895 * 111.00294 * 162.27323 * 4 2 1 6 6 C 1.50700 * 109.46782 * 288.27320 * 5 4 2 7 7 H 1.07995 * 120.00450 * 4.59733 * 6 5 4 8 8 C 1.37883 * 119.99827 * 184.60277 * 6 5 4 9 9 N 1.31513 * 120.00044 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99971 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46853 * 89.99955 * 10 8 6 12 12 H 1.48501 * 109.47079 * 209.99886 * 10 8 6 13 13 H 1.48498 * 109.47036 * 330.00089 * 10 8 6 14 14 C 1.46902 * 110.99793 * 286.22463 * 4 2 1 15 15 C 1.50701 * 109.47081 * 77.11504 * 14 4 2 16 16 C 1.34001 * 126.90583 * 241.55895 * 15 14 4 17 17 O 1.34444 * 110.15549 * 179.97438 * 16 15 14 18 18 C 1.34808 * 110.88970 * 0.02562 * 17 16 15 19 19 C 1.38938 * 133.49663 * 180.02562 * 18 17 16 20 20 C 1.37854 * 119.81944 * 179.97438 * 19 18 17 21 21 C 1.38743 * 120.68532 * 0.02791 * 20 19 18 22 22 C 1.36741 * 120.41657 * 359.97438 * 21 20 19 23 23 C 1.39412 * 119.71360 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.47262 * 309.22167 * 1 2 3 25 25 H 1.09008 * 109.46642 * 69.21931 * 1 2 3 26 26 H 1.09004 * 109.47490 * 189.21145 * 1 2 3 27 27 H 1.09001 * 109.47262 * 239.99435 * 2 1 3 28 28 H 1.09002 * 109.47158 * 171.62012 * 3 2 1 29 29 H 1.09000 * 109.47528 * 291.62019 * 3 2 1 30 30 H 1.09005 * 109.47221 * 51.62136 * 3 2 1 31 31 H 1.09002 * 109.47236 * 48.26728 * 5 4 2 32 32 H 1.08993 * 109.47395 * 168.27258 * 5 4 2 33 33 H 0.97003 * 120.00194 * 179.97438 * 9 8 6 34 34 H 1.08991 * 109.47166 * 317.11155 * 14 4 2 35 35 H 1.09002 * 109.47264 * 197.10815 * 14 4 2 36 36 H 1.07999 * 124.92207 * 359.96206 * 16 15 14 37 37 H 1.08000 * 120.09362 * 0.22736 * 19 18 17 38 38 H 1.08005 * 119.65709 * 179.97438 * 20 19 18 39 39 H 1.07992 * 119.79388 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.14275 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4267 -1.0846 1.0436 6 6 3.5252 -2.2208 0.0585 7 1 2.6425 -2.5633 -0.4610 8 6 4.7424 -2.8233 -0.1795 9 7 5.8174 -2.4061 0.4528 10 14 4.8645 -4.2322 -1.4000 11 1 5.1479 -3.6912 -2.7536 12 1 5.9615 -5.1464 -0.9926 13 1 3.5811 -4.9788 -1.4241 14 6 1.8338 0.1359 2.3983 15 6 0.3879 0.0910 2.8207 16 6 -0.4618 1.1246 2.8930 17 8 -1.6691 0.7037 3.3088 18 6 -1.6650 -0.6263 3.5286 19 6 -2.6320 -1.5281 3.9550 20 6 -2.3144 -2.8632 4.0855 21 6 -1.0362 -3.3185 3.7957 22 6 -0.0699 -2.4474 3.3746 23 6 -0.3729 -1.0937 3.2357 24 1 -0.3633 0.6498 0.7961 25 1 -0.3633 0.3646 -0.9609 26 1 -0.3634 -1.0144 0.1645 27 1 1.8934 -0.5139 -0.8899 28 1 3.1197 1.4461 0.1498 29 1 1.8042 1.9113 -0.9553 30 1 1.5596 1.9977 0.8056 31 1 4.0022 -0.2348 0.6767 32 1 3.8238 -1.4037 2.0071 33 1 6.6737 -2.8302 0.2857 34 1 2.1156 1.1650 2.1760 35 1 2.4598 -0.2462 3.2047 36 1 -0.2129 2.1476 2.6523 37 1 -3.6311 -1.1848 4.1798 38 1 -3.0681 -3.5619 4.4176 39 1 -0.8030 -4.3674 3.9033 40 1 0.9234 -2.8067 3.1498 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611259168.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:38 Heat of formation + Delta-G solvation = 36.937393 kcal Electronic energy + Delta-G solvation = -21418.418100 eV Core-core repulsion = 18392.857535 eV Total energy + Delta-G solvation = -3025.560565 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.22781 -37.87725 -37.58650 -33.16081 -32.59523 -30.81552 -30.18543 -29.35983 -27.18430 -26.63276 -24.49316 -23.04319 -22.09149 -21.94438 -20.11936 -18.69620 -17.12439 -16.68842 -16.10587 -15.93126 -15.48663 -15.19714 -14.62043 -14.10088 -13.86609 -13.57571 -13.24212 -13.00373 -12.69817 -12.35757 -12.11454 -11.99677 -11.83481 -11.71359 -11.41959 -11.19655 -10.96621 -10.73737 -10.69248 -10.57778 -10.42209 -10.12577 -9.75122 -9.43734 -9.18727 -8.43270 -8.38137 -7.77176 -7.19534 -6.02285 -4.02854 1.18149 1.62050 2.61525 3.03785 3.31654 3.38215 3.42849 3.99934 4.43222 4.73683 4.87178 4.93883 5.16748 5.30479 5.35279 5.43948 5.56431 5.59084 5.69341 5.74333 5.81410 5.96311 5.99477 6.08167 6.15017 6.24026 6.31972 6.34771 6.47042 6.50785 6.57124 6.71846 6.79636 6.85764 6.88733 6.91446 7.29113 7.37349 7.43463 7.82896 8.11611 8.25207 8.55988 9.04988 9.61133 11.08230 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.005789 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.534198 B = 4835.379348 C = 5680.172304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 C -0.180 4.180 4 N -0.521 5.521 5 C 0.192 3.808 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.108 3.892 15 C -0.129 4.129 16 C -0.022 4.022 17 O -0.199 6.199 18 C 0.044 3.956 19 C -0.120 4.120 20 C -0.097 4.097 21 C -0.148 4.148 22 C -0.044 4.044 23 C -0.105 4.105 24 H 0.054 0.946 25 H 0.040 0.960 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.047 0.953 31 H -0.008 1.008 32 H 0.031 0.969 33 H 0.260 0.740 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.199 0.801 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.449 4.804 5.864 15.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 C -0.238 4.238 4 N -0.245 5.245 5 C 0.067 3.933 6 C -0.540 4.540 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.020 4.020 15 C -0.131 4.131 16 C -0.087 4.087 17 O -0.101 6.101 18 C -0.003 4.003 19 C -0.139 4.139 20 C -0.115 4.115 21 C -0.166 4.166 22 C -0.062 4.062 23 C -0.106 4.106 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.010 0.990 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.216 0.784 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.742 4.481 5.977 15.641 hybrid contribution 0.855 -0.025 -0.879 1.226 sum -12.887 4.457 5.098 14.558 Atomic orbital electron populations 1.22077 0.96030 1.02033 1.00142 1.21567 0.94129 0.91607 0.95285 1.22429 1.01764 0.98985 1.00672 1.62262 1.23787 1.38521 0.99890 1.19785 0.81051 0.94938 0.97544 1.21143 0.93872 1.16128 1.22887 0.91965 1.24964 0.95756 0.97367 0.96458 1.69952 0.99292 1.42195 1.42513 0.86544 0.77713 0.82205 0.81244 1.20815 1.21315 1.19805 1.20555 0.89392 0.97194 0.94887 1.21273 0.97582 0.91033 1.03178 1.23519 0.82039 0.99551 1.03576 1.83948 1.33278 1.21680 1.71212 1.19660 0.96102 0.82076 1.02442 1.19785 0.97659 0.91355 1.05052 1.20847 0.96921 0.93963 0.99770 1.20778 0.93307 0.99949 1.02555 1.20529 1.00385 0.90725 0.94589 1.19724 0.92848 0.94698 1.03334 0.92726 0.94061 0.92497 0.89385 0.92242 0.93131 0.93359 0.99015 0.95089 0.92989 0.93474 0.90475 0.78402 0.85807 0.85444 0.85724 0.84597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.43 37.16 0.31 -2.13 16 2 C 0.08 1.56 2.76 -67.71 -0.19 1.38 16 3 C -0.18 -2.94 8.07 37.15 0.30 -2.64 16 4 N -0.52 -10.70 4.35 -229.53 -1.00 -11.70 16 5 C 0.19 4.78 4.64 -4.98 -0.02 4.75 16 6 C -0.50 -13.74 8.43 -34.44 -0.29 -14.03 16 7 H 0.06 1.72 7.50 -52.49 -0.39 1.32 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 10 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.11 1.89 5.26 -4.97 -0.03 1.87 16 15 C -0.13 -2.07 3.83 -102.66 -0.39 -2.46 16 16 C -0.02 -0.31 9.79 29.24 0.29 -0.02 16 17 O -0.20 -2.99 10.58 3.92 0.04 -2.95 16 18 C 0.04 0.69 7.42 -38.48 -0.29 0.40 16 19 C -0.12 -1.57 10.07 -39.46 -0.40 -1.96 16 20 C -0.10 -1.17 10.01 -39.54 -0.40 -1.57 16 21 C -0.15 -2.01 9.98 -39.94 -0.40 -2.41 16 22 C -0.04 -0.72 10.05 -39.69 -0.40 -1.12 16 23 C -0.11 -1.75 6.38 -105.16 -0.67 -2.42 16 24 H 0.05 0.85 4.31 -51.93 -0.22 0.63 16 25 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.09 1.88 6.95 -51.93 -0.36 1.52 16 28 H 0.06 1.08 6.72 -51.93 -0.35 0.73 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.69 6.45 -51.93 -0.34 0.36 16 31 H -0.01 -0.21 6.64 -51.93 -0.34 -0.55 16 32 H 0.03 0.83 7.68 -51.93 -0.40 0.43 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.05 0.76 5.33 -51.93 -0.28 0.49 16 35 H 0.08 1.41 7.62 -51.93 -0.40 1.01 16 36 H 0.20 2.05 8.06 -52.49 -0.42 1.63 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.14 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 321.89 15.07 4.85 4.85 Total: -1.00 -29.79 321.89 -8.65 -38.44 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.60 Total: 1.33 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -2.66 Total: -20.92 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.26 Total: -37.25 kcal Atomic # 8 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.79 -8.65 -38.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611259168.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.380 kcal (2) G-P(sol) polarization free energy of solvation -29.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds