Wall clock time and date at job start Mon Mar 30 2020 02:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47151 * 2 1 4 4 N 1.46903 * 109.46811 * 119.99952 * 2 1 3 5 5 C 1.46895 * 111.00294 * 162.27323 * 4 2 1 6 6 C 1.50700 * 109.46782 * 288.27320 * 5 4 2 7 7 H 1.07995 * 120.00450 * 4.59733 * 6 5 4 8 8 C 1.37883 * 119.99827 * 184.60277 * 6 5 4 9 9 N 1.31513 * 120.00044 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99971 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46853 * 89.99955 * 10 8 6 12 12 H 1.48501 * 109.47079 * 209.99886 * 10 8 6 13 13 H 1.48498 * 109.47036 * 330.00089 * 10 8 6 14 14 C 1.46902 * 110.99793 * 286.22463 * 4 2 1 15 15 C 1.50701 * 109.47081 * 77.11504 * 14 4 2 16 16 C 1.34001 * 126.90583 * 241.55895 * 15 14 4 17 17 O 1.34444 * 110.15549 * 179.97438 * 16 15 14 18 18 C 1.34808 * 110.88970 * 0.02562 * 17 16 15 19 19 C 1.38938 * 133.49663 * 180.02562 * 18 17 16 20 20 C 1.37854 * 119.81944 * 179.97438 * 19 18 17 21 21 C 1.38743 * 120.68532 * 0.02791 * 20 19 18 22 22 C 1.36741 * 120.41657 * 359.97438 * 21 20 19 23 23 C 1.39412 * 119.71360 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.47262 * 309.22167 * 1 2 3 25 25 H 1.09008 * 109.46642 * 69.21931 * 1 2 3 26 26 H 1.09004 * 109.47490 * 189.21145 * 1 2 3 27 27 H 1.09001 * 109.47262 * 239.99435 * 2 1 3 28 28 H 1.09002 * 109.47158 * 171.62012 * 3 2 1 29 29 H 1.09000 * 109.47528 * 291.62019 * 3 2 1 30 30 H 1.09005 * 109.47221 * 51.62136 * 3 2 1 31 31 H 1.09002 * 109.47236 * 48.26728 * 5 4 2 32 32 H 1.08993 * 109.47395 * 168.27258 * 5 4 2 33 33 H 0.97003 * 120.00194 * 179.97438 * 9 8 6 34 34 H 1.08991 * 109.47166 * 317.11155 * 14 4 2 35 35 H 1.09002 * 109.47264 * 197.10815 * 14 4 2 36 36 H 1.07999 * 124.92207 * 359.96206 * 16 15 14 37 37 H 1.08000 * 120.09362 * 0.22736 * 19 18 17 38 38 H 1.08005 * 119.65709 * 179.97438 * 20 19 18 39 39 H 1.07992 * 119.79388 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.14275 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4267 -1.0846 1.0436 6 6 3.5252 -2.2208 0.0585 7 1 2.6425 -2.5633 -0.4610 8 6 4.7424 -2.8233 -0.1795 9 7 5.8174 -2.4061 0.4528 10 14 4.8645 -4.2322 -1.4000 11 1 5.1479 -3.6912 -2.7536 12 1 5.9615 -5.1464 -0.9926 13 1 3.5811 -4.9788 -1.4241 14 6 1.8338 0.1359 2.3983 15 6 0.3879 0.0910 2.8207 16 6 -0.4618 1.1246 2.8930 17 8 -1.6691 0.7037 3.3088 18 6 -1.6650 -0.6263 3.5286 19 6 -2.6320 -1.5281 3.9550 20 6 -2.3144 -2.8632 4.0855 21 6 -1.0362 -3.3185 3.7957 22 6 -0.0699 -2.4474 3.3746 23 6 -0.3729 -1.0937 3.2357 24 1 -0.3633 0.6498 0.7961 25 1 -0.3633 0.3646 -0.9609 26 1 -0.3634 -1.0144 0.1645 27 1 1.8934 -0.5139 -0.8899 28 1 3.1197 1.4461 0.1498 29 1 1.8042 1.9113 -0.9553 30 1 1.5596 1.9977 0.8056 31 1 4.0022 -0.2348 0.6767 32 1 3.8238 -1.4037 2.0071 33 1 6.6737 -2.8302 0.2857 34 1 2.1156 1.1650 2.1760 35 1 2.4598 -0.2462 3.2047 36 1 -0.2129 2.1476 2.6523 37 1 -3.6311 -1.1848 4.1798 38 1 -3.0681 -3.5619 4.4176 39 1 -0.8030 -4.3674 3.9033 40 1 0.9234 -2.8067 3.1498 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611259168.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:38 Heat of formation + Delta-G solvation = 19.837283 kcal Electronic energy + Delta-G solvation = -21419.159616 eV Core-core repulsion = 18392.857535 eV Total energy + Delta-G solvation = -3026.302081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.36529 -39.44378 -38.66203 -35.04286 -34.03001 -32.45230 -31.31739 -30.53151 -28.94911 -28.02071 -26.14753 -24.15188 -23.93872 -23.07522 -21.46245 -20.12097 -18.40479 -18.20055 -17.72410 -17.24827 -16.78301 -16.53277 -16.27882 -15.81618 -15.09024 -14.83453 -14.59242 -14.55635 -14.05995 -13.83113 -13.67997 -13.32366 -13.13085 -13.05957 -12.86477 -12.77238 -12.64476 -12.46369 -12.32273 -12.11255 -11.81599 -11.67610 -11.46264 -11.32228 -10.61888 -10.55752 -9.49013 -8.93943 -8.84751 -8.18452 -6.27468 0.09050 0.50566 1.38835 1.39950 1.45769 1.51860 1.95959 2.40206 2.87974 3.12642 3.36309 3.70554 3.74289 4.07750 4.14944 4.22243 4.25635 4.36869 4.51114 4.58338 4.59407 4.65888 4.69333 4.73959 4.81101 4.86882 5.00616 5.05398 5.10026 5.21246 5.25006 5.38887 5.43832 5.45915 5.55705 5.57519 5.67511 5.70205 5.81093 6.10779 6.30214 6.48280 6.71722 6.88742 7.41446 8.91473 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.005789 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.534198 B = 4835.379348 C = 5680.172304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.080 3.920 3 C -0.172 4.172 4 N -0.529 5.529 5 C 0.210 3.790 6 C -0.515 4.515 7 H 0.055 0.945 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.269 1.269 14 C 0.115 3.885 15 C -0.162 4.162 16 C 0.005 3.995 17 O -0.198 6.198 18 C 0.026 3.974 19 C -0.115 4.115 20 C -0.091 4.091 21 C -0.143 4.143 22 C -0.080 4.080 23 C -0.128 4.128 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.074 0.926 31 H -0.029 1.029 32 H 0.000 1.000 33 H 0.263 0.737 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.239 0.761 37 H 0.155 0.845 38 H 0.168 0.832 39 H 0.142 0.858 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.245 5.362 5.750 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.029 4.029 3 C -0.230 4.230 4 N -0.252 5.252 5 C 0.084 3.916 6 C -0.553 4.553 7 H 0.073 0.927 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.193 1.193 14 C -0.013 4.013 15 C -0.164 4.164 16 C -0.060 4.060 17 O -0.100 6.100 18 C -0.020 4.020 19 C -0.133 4.133 20 C -0.109 4.109 21 C -0.161 4.161 22 C -0.099 4.099 23 C -0.129 4.129 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.093 0.907 31 H -0.012 1.012 32 H 0.018 0.982 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.255 0.745 37 H 0.173 0.827 38 H 0.186 0.814 39 H 0.160 0.840 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -16.561 5.047 5.866 18.279 hybrid contribution 1.663 -0.198 -0.783 1.849 sum -14.897 4.849 5.083 16.471 Atomic orbital electron populations 1.21940 0.93891 1.01107 1.01861 1.21578 0.95645 0.92612 0.93047 1.22328 1.00221 0.97540 1.02909 1.62155 1.20546 1.40668 1.01881 1.19371 0.83541 0.93586 0.95098 1.21407 0.93763 1.16859 1.23270 0.92699 1.25814 0.95341 0.99954 0.98260 1.70071 0.99823 1.43586 1.43965 0.85485 0.77809 0.78949 0.78999 1.19846 1.20689 1.19338 1.20436 0.90762 0.97226 0.92840 1.21094 0.96935 0.92209 1.06114 1.24134 0.80947 1.00367 1.00514 1.83968 1.33444 1.21493 1.71062 1.19992 0.96115 0.82453 1.03489 1.20277 0.98483 0.91240 1.03273 1.21285 0.96768 0.94438 0.98362 1.21070 0.93577 1.00429 1.01068 1.20461 0.99998 0.91740 0.97653 1.19938 0.94032 0.94901 1.04047 0.91167 0.91935 0.94820 0.92708 0.94679 0.91035 0.90689 1.01176 0.98181 0.92785 0.91724 0.92561 0.74515 0.82711 0.81422 0.84022 0.87783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 8.43 71.98 0.61 -3.63 16 2 C 0.08 3.04 2.76 44.91 0.12 3.16 16 3 C -0.17 -5.44 8.07 71.98 0.58 -4.86 16 4 N -0.53 -22.78 4.35 -880.09 -3.83 -26.60 16 5 C 0.21 11.18 4.64 85.56 0.40 11.57 16 6 C -0.51 -29.53 8.43 25.60 0.22 -29.31 16 7 H 0.05 3.16 7.50 -2.91 -0.02 3.14 16 8 C 0.00 0.24 5.46 84.66 0.46 0.70 16 9 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 10 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 14 C 0.12 4.17 5.26 85.56 0.45 4.62 16 15 C -0.16 -5.14 3.83 -18.59 -0.07 -5.21 16 16 C 0.01 0.13 9.79 66.85 0.65 0.79 16 17 O -0.20 -5.40 10.58 -8.87 -0.09 -5.49 16 18 C 0.03 0.77 7.42 22.99 0.17 0.94 16 19 C -0.11 -2.64 10.07 22.35 0.23 -2.41 16 20 C -0.09 -1.93 10.01 22.30 0.22 -1.70 16 21 C -0.14 -3.80 9.98 22.04 0.22 -3.58 16 22 C -0.08 -2.73 10.05 22.20 0.22 -2.51 16 23 C -0.13 -4.30 6.38 -20.21 -0.13 -4.43 16 24 H 0.07 2.03 4.31 -2.39 -0.01 2.02 16 25 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 2.43 6.95 -2.39 -0.02 2.41 16 28 H 0.03 1.28 6.72 -2.39 -0.02 1.26 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 1.95 6.45 -2.38 -0.02 1.94 16 31 H -0.03 -1.65 6.64 -2.39 -0.02 -1.67 16 32 H 0.00 0.00 7.68 -2.39 -0.02 -0.01 16 33 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 34 H 0.06 2.07 5.33 -2.39 -0.01 2.05 16 35 H 0.06 2.22 7.62 -2.39 -0.02 2.20 16 36 H 0.24 3.84 8.06 -2.91 -0.02 3.82 16 37 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 39 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 40 H 0.10 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -68.02 321.89 3.77 -64.25 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 1.03 Total: 12.83 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 4.35 Total: -35.88 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -3.54 Total: -82.79 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.09 Total: -5.49 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -68.02 3.77 -64.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611259168.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.092 kcal (2) G-P(sol) polarization free energy of solvation -68.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds