Wall clock time and date at job start Mon Mar 30 2020 01:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47108 * 2 1 4 4 C 1.50699 * 109.46876 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.00121 * 87.11869 * 4 3 2 6 6 C 1.33154 * 119.99829 * 267.38724 * 4 3 2 7 7 C 1.46904 * 120.00148 * 7.27834 * 6 4 3 8 8 O 1.21661 * 119.99554 * 6.19745 * 7 6 4 9 9 N 1.34770 * 120.00475 * 186.19119 * 7 6 4 10 10 C 1.36874 * 119.99790 * 354.84294 * 9 7 6 11 11 H 1.07999 * 119.99960 * 348.99607 * 10 9 7 12 12 C 1.39002 * 120.00367 * 169.00728 * 10 9 7 13 13 N 1.31365 * 119.99441 * 358.49974 * 12 10 9 14 14 Si 1.86791 * 120.00256 * 178.50145 * 12 10 9 15 15 H 1.48504 * 109.47185 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47265 * 119.99565 * 14 12 10 17 17 H 1.48503 * 109.47268 * 239.99917 * 14 12 10 18 18 C 1.39685 * 120.00288 * 174.83342 * 9 7 6 19 19 C 1.38986 * 120.08137 * 103.92020 * 18 9 7 20 20 C 1.38080 * 119.92233 * 179.79235 * 19 18 9 21 21 C 1.38311 * 120.07485 * 0.48425 * 20 19 18 22 22 C 1.38311 * 120.16674 * 359.74271 * 21 20 19 23 23 C 1.38071 * 120.07501 * 0.02579 * 22 21 20 24 24 H 1.08998 * 109.46725 * 299.99736 * 1 2 3 25 25 H 1.08997 * 109.47329 * 60.00070 * 1 2 3 26 26 H 1.08992 * 109.47057 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46725 * 240.00264 * 2 1 3 28 28 H 1.08997 * 109.47329 * 119.99930 * 2 1 3 29 29 H 1.08997 * 109.47055 * 59.99949 * 3 2 1 30 30 H 1.08997 * 109.46968 * 300.00150 * 3 2 1 31 31 H 1.09006 * 109.47471 * 89.99829 * 5 4 3 32 32 H 1.09007 * 109.47364 * 209.99412 * 5 4 3 33 33 H 1.09000 * 109.47572 * 329.99746 * 5 4 3 34 34 H 1.07999 * 120.00223 * 187.27415 * 6 4 3 35 35 H 0.97005 * 119.99728 * 185.01251 * 13 12 10 36 36 H 1.08008 * 120.03671 * 0.02562 * 19 18 9 37 37 H 1.07994 * 119.95920 * 180.22590 * 20 19 18 38 38 H 1.08002 * 119.91571 * 179.72436 * 21 20 19 39 39 H 1.07996 * 119.96281 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.03873 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3000 1.3770 -1.3044 6 6 4.2132 1.4948 1.1511 7 6 3.4881 1.3914 2.4245 8 8 2.2967 1.1454 2.4277 9 7 4.1427 1.5689 3.5891 10 6 5.5006 1.7405 3.5916 11 1 6.0696 1.5585 2.6919 12 6 6.1475 2.1488 4.7522 13 7 5.4522 2.3984 5.8385 14 14 8.0053 2.3426 4.7673 15 1 8.5494 2.0023 3.4281 16 1 8.3538 3.7469 5.1014 17 1 8.5897 1.4320 5.7845 18 6 3.4353 1.5779 4.7936 19 6 3.4750 0.4710 5.6331 20 6 2.7780 0.4851 6.8249 21 6 2.0329 1.5953 7.1790 22 6 1.9873 2.6969 6.3440 23 6 2.6856 2.6917 5.1529 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 4.4815 2.3876 -1.6703 32 1 5.2525 0.8704 -1.1488 33 1 3.7107 0.8257 -2.0371 34 1 5.2867 1.6132 1.1491 35 1 5.8937 2.7527 6.6262 36 1 4.0533 -0.3978 5.3552 37 1 2.8113 -0.3733 7.4794 38 1 1.4851 1.6019 8.1098 39 1 1.4048 3.5622 6.6239 40 1 2.6492 3.5521 4.5011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747653200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:15 Heat of formation + Delta-G solvation = 13.050338 kcal Electronic energy + Delta-G solvation = -21374.480568 eV Core-core repulsion = 18347.884183 eV Total energy + Delta-G solvation = -3026.596385 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.46078 -37.62633 -35.74464 -34.46574 -32.41205 -31.62861 -29.76465 -29.16063 -27.16023 -26.27516 -24.92762 -22.16084 -21.43287 -21.07450 -19.58479 -18.50441 -16.91615 -16.38181 -15.46548 -14.79498 -14.65825 -14.41238 -14.20776 -13.73999 -13.47173 -13.05480 -12.89842 -12.62395 -12.59074 -12.31768 -12.00903 -11.82186 -11.59952 -11.41635 -11.27189 -11.20293 -10.85465 -10.72646 -10.49114 -10.42210 -10.30693 -10.16198 -9.85002 -9.42888 -8.39049 -8.24613 -8.08925 -7.72564 -7.53649 -6.13604 -3.99459 2.15595 2.62053 2.63443 3.09572 3.16438 3.19285 4.00700 4.27874 4.67817 4.98470 5.15155 5.29833 5.48528 5.60322 5.65153 5.78200 5.85398 5.89078 5.97722 5.99654 6.10331 6.11674 6.21421 6.29696 6.33134 6.40381 6.50781 6.58270 6.65369 6.87144 6.91697 6.95696 7.15702 7.16477 7.30424 7.40497 7.46386 7.56782 7.66487 7.86133 8.06024 8.47885 8.99730 9.38947 9.82548 10.60609 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.014682 B = 0.007574 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.638652 B = 3696.209393 C = 5222.965558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.090 4.090 4 C -0.084 4.084 5 C -0.115 4.115 6 C -0.177 4.177 7 C 0.489 3.511 8 O -0.584 6.584 9 N -0.411 5.411 10 C -0.339 4.339 11 H 0.106 0.894 12 C 0.035 3.965 13 N -0.850 5.850 14 Si 0.926 3.074 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.262 3.738 19 C -0.103 4.103 20 C -0.115 4.115 21 C -0.153 4.153 22 C -0.116 4.116 23 C -0.102 4.102 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.122 0.878 35 H 0.271 0.729 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.541 -1.310 -5.739 6.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.139 4.139 3 C -0.127 4.127 4 C -0.087 4.087 5 C -0.172 4.172 6 C -0.198 4.198 7 C 0.282 3.718 8 O -0.471 6.471 9 N -0.126 5.126 10 C -0.466 4.466 11 H 0.124 0.876 12 C -0.171 4.171 13 N -0.486 5.486 14 Si 0.752 3.248 15 H -0.193 1.193 16 H -0.206 1.206 17 H -0.206 1.206 18 C 0.171 3.829 19 C -0.123 4.123 20 C -0.134 4.134 21 C -0.172 4.172 22 C -0.135 4.135 23 C -0.121 4.121 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.140 0.860 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.019 -1.419 -5.477 6.413 hybrid contribution 1.445 0.322 0.287 1.508 sum -1.574 -1.097 -5.190 5.533 Atomic orbital electron populations 1.21702 0.96614 1.00583 1.01290 1.21259 0.94960 0.96547 1.01150 1.20958 0.91071 0.97877 1.02798 1.22270 0.96141 0.96285 0.93990 1.20832 0.99614 1.01714 0.95000 1.22564 1.00241 1.04763 0.92193 1.18189 0.86604 0.83022 0.83987 1.90597 1.15177 1.54335 1.86976 1.41333 1.07103 1.61296 1.02834 1.19820 0.80704 1.47092 0.98960 0.87649 1.25339 1.00408 0.96384 0.95017 1.69864 1.35418 1.40626 1.02691 0.85874 0.82322 0.78071 0.78530 1.19337 1.20586 1.20601 1.16937 0.88629 0.91947 0.85423 1.20796 0.99186 0.97570 0.94745 1.20593 0.98739 0.97697 0.96399 1.20634 1.02361 0.94813 0.99346 1.20583 1.00383 0.97628 0.94897 1.20749 0.98350 0.96654 0.96371 0.92340 0.93814 0.93671 0.93977 0.90963 0.87534 0.93718 0.91639 0.91857 0.91900 0.85974 0.91642 0.88043 0.88013 0.88121 0.87959 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.10 -1.68 5.48 -26.73 -0.15 -1.82 16 3 C -0.09 -1.56 4.59 -27.88 -0.13 -1.69 16 4 C -0.08 -1.45 5.36 -101.12 -0.54 -2.00 16 5 C -0.11 -1.52 10.04 36.00 0.36 -1.16 16 6 C -0.18 -3.56 8.91 -37.85 -0.34 -3.90 16 7 C 0.49 11.63 7.35 -12.76 -0.09 11.54 16 8 O -0.58 -14.44 11.67 5.22 0.06 -14.38 16 9 N -0.41 -10.36 2.65 -60.29 -0.16 -10.52 16 10 C -0.34 -8.46 9.27 -15.02 -0.14 -8.60 16 11 H 0.11 2.46 5.76 -52.49 -0.30 2.16 16 12 C 0.03 0.86 5.40 -17.47 -0.09 0.77 16 13 N -0.85 -21.90 9.56 55.50 0.53 -21.37 16 14 Si 0.93 19.31 29.56 -169.99 -5.02 14.28 16 15 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 16 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 18 C 0.26 6.58 2.25 -83.73 -0.19 6.39 16 19 C -0.10 -2.46 8.90 -39.36 -0.35 -2.81 16 20 C -0.12 -2.43 10.04 -39.61 -0.40 -2.83 16 21 C -0.15 -3.07 10.04 -39.53 -0.40 -3.47 16 22 C -0.12 -2.45 10.04 -39.62 -0.40 -2.84 16 23 C -0.10 -2.43 9.29 -39.37 -0.37 -2.80 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.40 6.96 -51.93 -0.36 1.04 16 29 H 0.11 2.19 5.53 -51.93 -0.29 1.90 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 34 H 0.12 2.36 6.12 -52.49 -0.32 2.04 16 35 H 0.27 6.77 8.32 -40.82 -0.34 6.43 16 36 H 0.10 2.43 8.06 -52.48 -0.42 2.00 16 37 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 39 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.10 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 329.67 15.07 4.97 4.97 Total: -1.00 -27.66 329.67 -8.37 -36.03 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.90 Total: 7.97 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -2.85 Total: -16.98 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: 0.37 Total: -31.88 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.06 Total: -14.38 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.66 -8.37 -36.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747653200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.083 kcal (2) G-P(sol) polarization free energy of solvation -27.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds