Wall clock time and date at job start Mon Mar 30 2020 01:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47108 * 2 1 4 4 C 1.50699 * 109.46876 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.00121 * 87.11869 * 4 3 2 6 6 C 1.33154 * 119.99829 * 267.38724 * 4 3 2 7 7 C 1.46904 * 120.00148 * 7.27834 * 6 4 3 8 8 O 1.21661 * 119.99554 * 6.19745 * 7 6 4 9 9 N 1.34770 * 120.00475 * 186.19119 * 7 6 4 10 10 C 1.36874 * 119.99790 * 354.84294 * 9 7 6 11 11 H 1.07999 * 119.99960 * 348.99607 * 10 9 7 12 12 C 1.39002 * 120.00367 * 169.00728 * 10 9 7 13 13 N 1.31365 * 119.99441 * 358.49974 * 12 10 9 14 14 Si 1.86791 * 120.00256 * 178.50145 * 12 10 9 15 15 H 1.48504 * 109.47185 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47265 * 119.99565 * 14 12 10 17 17 H 1.48503 * 109.47268 * 239.99917 * 14 12 10 18 18 C 1.39685 * 120.00288 * 174.83342 * 9 7 6 19 19 C 1.38986 * 120.08137 * 103.92020 * 18 9 7 20 20 C 1.38080 * 119.92233 * 179.79235 * 19 18 9 21 21 C 1.38311 * 120.07485 * 0.48425 * 20 19 18 22 22 C 1.38311 * 120.16674 * 359.74271 * 21 20 19 23 23 C 1.38071 * 120.07501 * 0.02579 * 22 21 20 24 24 H 1.08998 * 109.46725 * 299.99736 * 1 2 3 25 25 H 1.08997 * 109.47329 * 60.00070 * 1 2 3 26 26 H 1.08992 * 109.47057 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46725 * 240.00264 * 2 1 3 28 28 H 1.08997 * 109.47329 * 119.99930 * 2 1 3 29 29 H 1.08997 * 109.47055 * 59.99949 * 3 2 1 30 30 H 1.08997 * 109.46968 * 300.00150 * 3 2 1 31 31 H 1.09006 * 109.47471 * 89.99829 * 5 4 3 32 32 H 1.09007 * 109.47364 * 209.99412 * 5 4 3 33 33 H 1.09000 * 109.47572 * 329.99746 * 5 4 3 34 34 H 1.07999 * 120.00223 * 187.27415 * 6 4 3 35 35 H 0.97005 * 119.99728 * 185.01251 * 13 12 10 36 36 H 1.08008 * 120.03671 * 0.02562 * 19 18 9 37 37 H 1.07994 * 119.95920 * 180.22590 * 20 19 18 38 38 H 1.08002 * 119.91571 * 179.72436 * 21 20 19 39 39 H 1.07996 * 119.96281 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.03873 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3000 1.3770 -1.3044 6 6 4.2132 1.4948 1.1511 7 6 3.4881 1.3914 2.4245 8 8 2.2967 1.1454 2.4277 9 7 4.1427 1.5689 3.5891 10 6 5.5006 1.7405 3.5916 11 1 6.0696 1.5585 2.6919 12 6 6.1475 2.1488 4.7522 13 7 5.4522 2.3984 5.8385 14 14 8.0053 2.3426 4.7673 15 1 8.5494 2.0023 3.4281 16 1 8.3538 3.7469 5.1014 17 1 8.5897 1.4320 5.7845 18 6 3.4353 1.5779 4.7936 19 6 3.4750 0.4710 5.6331 20 6 2.7780 0.4851 6.8249 21 6 2.0329 1.5953 7.1790 22 6 1.9873 2.6969 6.3440 23 6 2.6856 2.6917 5.1529 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 4.4815 2.3876 -1.6703 32 1 5.2525 0.8704 -1.1488 33 1 3.7107 0.8257 -2.0371 34 1 5.2867 1.6132 1.1491 35 1 5.8937 2.7527 6.6262 36 1 4.0533 -0.3978 5.3552 37 1 2.8113 -0.3733 7.4794 38 1 1.4851 1.6019 8.1098 39 1 1.4048 3.5622 6.6239 40 1 2.6492 3.5521 4.5011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747653200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:14 Heat of formation + Delta-G solvation = 0.694382 kcal Electronic energy + Delta-G solvation = -21375.016363 eV Core-core repulsion = 18347.884183 eV Total energy + Delta-G solvation = -3027.132179 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.22208 -39.29381 -37.30657 -36.20573 -33.77314 -33.45603 -31.49954 -30.83451 -28.51629 -27.64136 -26.78184 -23.78410 -23.17048 -22.46334 -21.32050 -20.19920 -18.55518 -18.04743 -17.20758 -16.45347 -16.35280 -16.19117 -15.72954 -15.31897 -14.92960 -14.62626 -14.36467 -14.12093 -14.03234 -13.83112 -13.48815 -13.29066 -13.05912 -13.00414 -12.96909 -12.74015 -12.44419 -12.13463 -12.03132 -11.97225 -11.93715 -11.71048 -11.34453 -11.20555 -10.12362 -9.92901 -9.74440 -9.47673 -9.31640 -7.96991 -5.90415 0.61498 0.86002 0.93313 1.44039 1.44872 1.56521 2.27258 2.52132 2.99273 3.20103 3.33585 3.97995 4.11648 4.26214 4.31027 4.32302 4.36274 4.42218 4.56828 4.63784 4.77814 4.80975 4.85502 4.89690 4.93606 5.00420 5.11134 5.13969 5.20548 5.27750 5.41253 5.43688 5.51867 5.54799 5.71511 5.72787 5.83864 5.85489 6.00407 6.08880 6.31773 6.65615 7.13056 7.57374 8.00454 8.75332 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.014682 B = 0.007574 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.638652 B = 3696.209393 C = 5222.965558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 C -0.094 4.094 4 C -0.051 4.051 5 C -0.114 4.114 6 C -0.220 4.220 7 C 0.479 3.521 8 O -0.605 6.605 9 N -0.430 5.430 10 C -0.357 4.357 11 H 0.114 0.886 12 C -0.009 4.009 13 N -0.874 5.874 14 Si 0.992 3.008 15 H -0.256 1.256 16 H -0.281 1.281 17 H -0.283 1.283 18 C 0.242 3.758 19 C -0.131 4.131 20 C -0.113 4.113 21 C -0.149 4.149 22 C -0.114 4.114 23 C -0.131 4.131 24 H 0.033 0.967 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.267 0.733 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.144 0.856 39 H 0.133 0.867 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.572 -1.444 -6.978 7.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.135 4.135 3 C -0.131 4.131 4 C -0.054 4.054 5 C -0.170 4.170 6 C -0.240 4.240 7 C 0.274 3.726 8 O -0.493 6.493 9 N -0.145 5.145 10 C -0.483 4.483 11 H 0.131 0.869 12 C -0.212 4.212 13 N -0.510 5.510 14 Si 0.816 3.184 15 H -0.180 1.180 16 H -0.206 1.206 17 H -0.209 1.209 18 C 0.151 3.849 19 C -0.151 4.151 20 C -0.132 4.132 21 C -0.167 4.167 22 C -0.133 4.133 23 C -0.150 4.150 24 H 0.053 0.947 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.144 0.856 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.151 0.849 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.055 -1.558 -6.734 7.557 hybrid contribution 1.304 0.345 0.591 1.472 sum -1.751 -1.213 -6.143 6.502 Atomic orbital electron populations 1.21661 0.95190 1.01566 1.01320 1.21197 0.96276 0.95578 1.00479 1.20954 0.91221 0.98442 1.02450 1.22800 0.96402 0.91118 0.95058 1.20945 0.99787 1.03533 0.92721 1.22444 1.00433 1.09632 0.91501 1.18899 0.86727 0.82026 0.84985 1.90573 1.16078 1.55111 1.87550 1.41580 1.07437 1.62099 1.03407 1.20161 0.81061 1.47537 0.99590 0.86881 1.26160 1.04458 0.96037 0.94565 1.70035 1.36705 1.41370 1.02939 0.84867 0.77171 0.77555 0.78801 1.17985 1.20643 1.20903 1.17221 0.89206 0.92643 0.85874 1.20887 1.00765 0.97119 0.96370 1.20989 0.97503 0.99186 0.95489 1.21083 1.01617 0.93592 1.00421 1.20978 0.99460 0.99146 0.93680 1.20825 1.00232 0.96162 0.97811 0.94732 0.91298 0.92263 0.91276 0.94832 0.91297 0.90524 0.89482 0.90961 0.89424 0.85579 0.92162 0.89580 0.84932 0.83859 0.84915 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.91 71.98 0.71 -3.23 16 2 C -0.10 -3.14 5.48 30.60 0.17 -2.97 16 3 C -0.09 -3.16 4.59 29.85 0.14 -3.03 16 4 C -0.05 -1.71 5.36 -17.59 -0.09 -1.81 16 5 C -0.11 -2.61 10.04 71.23 0.72 -1.89 16 6 C -0.22 -9.06 8.91 23.40 0.21 -8.85 16 7 C 0.48 24.07 7.35 86.51 0.64 24.71 16 8 O -0.60 -31.77 11.67 -4.22 -0.05 -31.82 16 9 N -0.43 -22.89 2.65 -462.88 -1.23 -24.11 16 10 C -0.36 -18.55 9.27 84.09 0.78 -17.77 16 11 H 0.11 5.46 5.76 -2.91 -0.02 5.44 16 12 C -0.01 -0.46 5.40 84.95 0.46 0.00 16 13 N -0.87 -46.43 9.56 21.67 0.21 -46.23 16 14 Si 0.99 40.25 29.56 68.60 2.03 42.28 16 15 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 16 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 18 C 0.24 12.74 2.25 38.25 0.09 12.83 16 19 C -0.13 -6.53 8.90 22.41 0.20 -6.33 16 20 C -0.11 -4.72 10.04 22.25 0.22 -4.49 16 21 C -0.15 -5.73 10.04 22.30 0.22 -5.51 16 22 C -0.11 -4.78 10.04 22.25 0.22 -4.55 16 23 C -0.13 -6.53 9.29 22.41 0.21 -6.32 16 24 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.03 1.33 6.96 -2.39 -0.02 1.31 16 29 H 0.07 2.92 5.53 -2.39 -0.01 2.91 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.07 1.59 8.07 -2.38 -0.02 1.57 16 33 H 0.09 1.64 8.12 -2.39 -0.02 1.62 16 34 H 0.13 4.98 6.12 -2.91 -0.02 4.96 16 35 H 0.27 13.68 8.32 -92.70 -0.77 12.91 16 36 H 0.09 4.38 8.06 -2.91 -0.02 4.35 16 37 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 39 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.08 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -63.99 329.67 6.86 -57.13 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 1.01 Total: 31.95 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 4.89 Total: -29.20 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -1.02 Total: -70.34 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.05 Total: -31.82 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -63.99 6.86 -57.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747653200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.826 kcal (2) G-P(sol) polarization free energy of solvation -63.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds