Wall clock time and date at job start Mon Mar 30 2020 01:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32991 * 119.99832 * 2 1 4 4 C 1.50696 * 120.00212 * 180.02562 * 3 2 1 5 5 C 1.47104 * 119.99958 * 359.97438 * 3 2 1 6 6 O 1.21613 * 120.00035 * 0.02562 * 5 3 2 7 7 N 1.34777 * 119.99657 * 180.27470 * 5 3 2 8 8 C 1.46505 * 119.99724 * 179.72600 * 7 5 3 9 9 H 1.09000 * 109.46989 * 324.99747 * 8 7 5 10 10 C 1.52998 * 109.47085 * 205.00369 * 8 7 5 11 11 C 1.50700 * 109.47464 * 64.99926 * 10 8 7 12 12 H 1.08000 * 119.99989 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00230 * 180.02562 * 11 10 8 14 14 N 1.31514 * 120.00032 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00037 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47088 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.46996 * 119.99500 * 15 13 11 18 18 H 1.48493 * 109.47098 * 239.99403 * 15 13 11 19 19 C 1.50695 * 109.47124 * 85.00315 * 8 7 5 20 20 C 1.38235 * 120.00332 * 39.72639 * 19 8 7 21 21 C 1.38227 * 120.00291 * 179.79133 * 20 19 8 22 22 C 1.38236 * 119.99906 * 0.43442 * 21 20 19 23 23 C 1.38235 * 120.00016 * 359.82174 * 22 21 20 24 24 C 1.38235 * 120.00093 * 359.96940 * 23 22 21 25 25 H 1.08997 * 109.47795 * 60.00136 * 1 2 3 26 26 H 1.09008 * 109.47370 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47333 * 299.99901 * 1 2 3 28 28 H 1.07997 * 120.00405 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47284 * 270.00042 * 4 3 2 30 30 H 1.09010 * 109.46864 * 29.99948 * 4 3 2 31 31 H 1.09004 * 109.47577 * 149.99686 * 4 3 2 32 32 H 0.97000 * 120.00483 * 359.73032 * 7 5 3 33 33 H 1.08996 * 109.47475 * 185.00182 * 10 8 7 34 34 H 1.09001 * 109.47293 * 305.00106 * 10 8 7 35 35 H 0.96998 * 120.00229 * 180.02562 * 14 13 11 36 36 H 1.08001 * 119.99304 * 359.97438 * 20 19 8 37 37 H 1.07999 * 120.00120 * 180.27879 * 21 20 19 38 38 H 1.08002 * 119.99861 * 179.83275 * 22 21 20 39 39 H 1.08003 * 120.00279 * 180.02562 * 23 22 21 40 40 H 1.07991 * 120.00090 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6788 1.1519 -0.0006 5 6 1.4363 2.4257 -0.0006 6 8 0.2202 2.4257 -0.0006 7 7 2.1102 3.5929 -0.0062 8 6 1.3777 4.8616 -0.0128 9 1 0.4672 4.7524 -0.6021 10 6 2.2550 5.9539 -0.6277 11 6 2.5124 5.6346 -2.0778 12 1 2.0919 4.7420 -2.5171 13 6 3.2847 6.4818 -2.8437 14 7 3.7964 7.5689 -2.3089 15 14 3.6032 6.0863 -4.6414 16 1 2.9203 4.8167 -4.9974 17 1 3.0787 7.1860 -5.4906 18 1 5.0640 5.9419 -4.8652 19 6 1.0188 5.2418 1.4005 20 6 1.9250 5.0341 2.4236 21 6 1.5975 5.3869 3.7193 22 6 0.3602 5.9391 3.9935 23 6 -0.5481 6.1419 2.9714 24 6 -0.2189 5.7931 1.6749 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.0470 -0.9352 0.0004 29 1 4.0426 1.1516 1.0269 30 1 4.0420 0.2619 -0.5148 31 1 4.0420 2.0420 -0.5144 32 1 3.0802 3.5929 -0.0059 33 1 1.7457 6.9145 -0.5520 34 1 3.2033 6.0024 -0.0925 35 1 4.3394 8.1652 -2.8479 36 1 2.8901 4.5989 2.2098 37 1 2.3072 5.2287 4.5178 38 1 0.1033 6.2122 5.0064 39 1 -1.5146 6.5737 3.1855 40 1 -0.9283 5.9520 0.8763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749045833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:55 Heat of formation + Delta-G solvation = -28.510589 kcal Electronic energy + Delta-G solvation = -20966.116764 eV Core-core repulsion = 17937.718162 eV Total energy + Delta-G solvation = -3028.398602 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.18117 -39.85370 -37.00664 -35.77213 -34.77740 -32.75958 -31.72564 -30.78787 -30.32082 -26.88512 -25.74490 -23.93572 -23.64266 -23.13452 -21.24909 -20.16241 -18.65642 -17.69890 -17.30958 -16.90673 -16.38961 -16.28527 -15.71084 -15.43674 -15.06671 -14.66599 -14.47733 -14.23606 -14.19407 -13.75891 -13.68535 -13.62427 -13.42976 -13.38950 -12.93436 -12.79133 -12.62637 -12.48936 -12.29609 -12.14137 -11.88013 -11.60269 -11.32536 -10.65524 -10.45171 -10.12189 -9.78450 -9.71198 -9.52012 -8.22242 -6.32662 0.49427 0.53252 0.54910 1.36813 1.39200 1.51132 2.37029 2.38968 2.44992 2.97455 3.11900 3.85974 3.99627 4.02232 4.02765 4.20042 4.31145 4.40466 4.41882 4.59687 4.65004 4.76126 4.77849 4.81186 4.85996 4.91555 5.05833 5.12059 5.18890 5.27265 5.28712 5.40873 5.53992 5.60179 5.62208 5.63710 5.72199 5.76250 5.93011 6.14659 6.19286 6.77073 6.79958 7.36136 7.40526 8.88795 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.010958 B = 0.007522 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.610707 B = 3721.552577 C = 5513.848559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.066 4.066 3 C -0.207 4.207 4 C -0.111 4.111 5 C 0.535 3.465 6 O -0.582 6.582 7 N -0.695 5.695 8 C 0.200 3.800 9 H 0.055 0.945 10 C 0.038 3.962 11 C -0.529 4.529 12 H 0.051 0.949 13 C 0.011 3.989 14 N -0.926 5.926 15 Si 0.957 3.043 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.273 1.273 19 C -0.098 4.098 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.134 4.134 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.162 0.838 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.405 0.595 33 H 0.003 0.997 34 H 0.011 0.989 35 H 0.265 0.735 36 H 0.118 0.882 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.144 0.856 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 -11.657 10.335 15.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.085 4.085 3 C -0.210 4.210 4 C -0.168 4.168 5 C 0.326 3.674 6 O -0.464 6.464 7 N -0.345 5.345 8 C 0.095 3.905 9 H 0.073 0.927 10 C 0.001 3.999 11 C -0.567 4.567 12 H 0.069 0.931 13 C -0.188 4.188 14 N -0.566 5.566 15 Si 0.782 3.218 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.198 1.198 19 C -0.099 4.099 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.152 4.152 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.179 0.821 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.242 0.758 33 H 0.021 0.979 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.136 0.864 37 H 0.165 0.835 38 H 0.170 0.830 39 H 0.162 0.838 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.340 -11.476 10.278 15.583 hybrid contribution 0.544 0.511 -1.310 1.508 sum -1.795 -10.965 8.968 14.279 Atomic orbital electron populations 1.20923 0.92926 1.01541 1.02002 1.23887 0.96604 0.97492 0.90517 1.21658 0.97863 0.91965 1.09484 1.20803 0.88927 1.03686 1.03380 1.19090 0.87247 0.85276 0.75807 1.90707 1.15142 1.88197 1.52387 1.45863 1.10515 1.04774 1.73302 1.19696 0.95233 0.84224 0.91366 0.92658 1.19128 0.93783 0.92234 0.94797 1.21408 1.31239 1.07972 0.96115 0.93060 1.25786 0.95495 0.94747 1.02743 1.70076 1.34950 1.13538 1.37993 0.85516 0.78168 0.78174 0.79894 1.19453 1.20664 1.19841 1.20462 0.94987 0.98664 0.95793 1.21055 0.99093 1.00656 0.93207 1.21439 0.97752 0.98780 0.96208 1.21474 0.93661 0.99385 1.00154 1.21388 1.00780 0.99874 0.92040 1.21169 0.96037 1.00054 0.97983 0.92765 0.90371 0.92407 0.82052 0.89796 0.89039 0.92459 0.75794 0.97864 0.97083 0.92652 0.86353 0.83518 0.82989 0.83792 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 8.45 71.23 0.60 -2.52 16 2 C -0.07 -1.55 9.95 24.52 0.24 -1.31 16 3 C -0.21 -5.85 6.00 -18.70 -0.11 -5.96 16 4 C -0.11 -2.40 9.62 71.23 0.68 -1.72 16 5 C 0.54 20.29 7.67 86.57 0.66 20.96 16 6 O -0.58 -25.44 12.73 -4.07 -0.05 -25.49 16 7 N -0.70 -27.14 3.97 -449.71 -1.78 -28.92 16 8 C 0.20 8.89 2.12 44.24 0.09 8.98 16 9 H 0.06 2.74 7.44 -2.39 -0.02 2.73 16 10 C 0.04 1.96 4.50 29.85 0.13 2.10 16 11 C -0.53 -29.40 8.84 25.60 0.23 -29.17 16 12 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 13 C 0.01 0.61 5.46 84.65 0.46 1.08 16 14 N -0.93 -54.54 13.29 21.45 0.28 -54.25 16 15 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 C -0.10 -3.89 4.91 -19.87 -0.10 -3.98 16 20 C -0.12 -4.22 9.33 22.27 0.21 -4.01 16 21 C -0.12 -3.50 10.05 22.27 0.22 -3.27 16 22 C -0.13 -3.38 10.05 22.27 0.22 -3.15 16 23 C -0.12 -3.62 10.05 22.27 0.22 -3.40 16 24 C -0.13 -4.94 9.67 22.27 0.22 -4.72 16 25 H 0.05 1.73 7.22 -2.39 -0.02 1.72 16 26 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.06 1.78 7.22 -2.39 -0.02 1.77 16 28 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 1.51 8.07 -2.38 -0.02 1.50 16 31 H 0.06 1.40 6.70 -2.38 -0.02 1.39 16 32 H 0.41 14.63 6.70 -92.71 -0.62 14.01 16 33 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 36 H 0.12 3.89 7.71 -2.91 -0.02 3.87 16 37 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 40 H 0.11 4.11 8.04 -2.92 -0.02 4.09 16 Total: -1.00 -69.34 337.42 4.87 -64.46 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.40 Total: 28.38 kcal Atomic # 6 Polarization: -34.10 SS G_CDS: 4.00 Total: -30.10 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -1.50 Total: -83.18 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.05 Total: -25.49 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -69.34 4.87 -64.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749045833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.952 kcal (2) G-P(sol) polarization free energy of solvation -69.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds