Wall clock time and date at job start Mon Mar 30 2020 01:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32994 * 119.99889 * 2 1 4 4 C 1.50694 * 119.99742 * 180.02562 * 3 2 1 5 5 C 1.47099 * 119.99892 * 359.97438 * 3 2 1 6 6 O 1.21610 * 120.00519 * 0.02562 * 5 3 2 7 7 N 1.34784 * 119.99647 * 180.02562 * 5 3 2 8 8 C 1.46494 * 119.99635 * 180.02562 * 7 5 3 9 9 H 1.08997 * 109.47706 * 34.99696 * 8 7 5 10 10 C 1.53004 * 109.46982 * 155.00372 * 8 7 5 11 11 C 1.50699 * 109.46636 * 294.99501 * 10 8 7 12 12 H 1.08000 * 120.00286 * 0.02562 * 11 10 8 13 13 C 1.37881 * 119.99998 * 179.97438 * 11 10 8 14 14 N 1.31511 * 120.00352 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 119.99798 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.46909 * 89.99775 * 15 13 11 17 17 H 1.48496 * 109.47214 * 210.00145 * 15 13 11 18 18 H 1.48496 * 109.47040 * 330.00353 * 15 13 11 19 19 C 1.50702 * 109.47343 * 274.99973 * 8 7 5 20 20 C 1.38241 * 119.99979 * 319.72979 * 19 8 7 21 21 C 1.38232 * 120.00070 * 179.80681 * 20 19 8 22 22 C 1.38233 * 120.00035 * 0.40353 * 21 20 19 23 23 C 1.38234 * 119.99826 * 359.84920 * 22 21 20 24 24 C 1.38229 * 120.00616 * 140.00252 * 19 8 7 25 25 H 1.09002 * 109.46986 * 60.00170 * 1 2 3 26 26 H 1.08997 * 109.46683 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46827 * 300.00167 * 1 2 3 28 28 H 1.07997 * 119.99690 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47280 * 269.99860 * 4 3 2 30 30 H 1.09005 * 109.47415 * 30.00149 * 4 3 2 31 31 H 1.09002 * 109.46945 * 149.99418 * 4 3 2 32 32 H 0.96995 * 120.00015 * 359.72716 * 7 5 3 33 33 H 1.09002 * 109.47373 * 54.99720 * 10 8 7 34 34 H 1.09001 * 109.47302 * 175.00215 * 10 8 7 35 35 H 0.96997 * 120.00062 * 179.97438 * 14 13 11 36 36 H 1.08008 * 119.99995 * 359.97438 * 20 19 8 37 37 H 1.07998 * 119.99900 * 180.22916 * 21 20 19 38 38 H 1.08003 * 119.99820 * 179.83596 * 22 21 20 39 39 H 1.08003 * 119.99753 * 179.97438 * 23 22 21 40 40 H 1.08005 * 119.99704 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1517 -0.0006 5 6 1.4365 2.4257 -0.0006 6 8 0.2204 2.4257 -0.0006 7 7 2.1104 3.5929 -0.0011 8 6 1.3779 4.8616 -0.0011 9 1 0.4674 4.7555 0.5886 10 6 2.2554 5.9571 0.6079 11 6 2.5127 5.6454 2.0596 12 1 2.0929 4.7548 2.5034 13 6 3.2851 6.4966 2.8211 14 7 3.5102 6.2244 4.0879 15 14 4.0120 8.0367 2.0534 16 1 3.0582 9.1644 2.2082 17 1 5.2897 8.3723 2.7316 18 1 4.2657 7.7977 0.6099 19 6 1.0189 5.2344 -1.4164 20 6 1.9294 5.0317 -2.4367 21 6 1.5986 5.3700 -3.7356 22 6 0.3606 5.9187 -4.0130 23 6 -0.5479 6.1262 -2.9920 24 6 -0.2186 5.7843 -1.6937 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.0470 -0.9353 -0.0004 29 1 4.0427 1.1515 1.0269 30 1 4.0421 0.2619 -0.5148 31 1 4.0421 2.0418 -0.5145 32 1 3.0804 3.5929 0.0029 33 1 3.2037 6.0027 0.0724 34 1 1.7460 6.9174 0.5273 35 1 4.0539 6.8231 4.6235 36 1 2.8982 4.6065 -2.2195 37 1 2.3086 5.2082 -4.5332 38 1 0.1032 6.1854 -5.0274 39 1 -1.5151 6.5553 -3.2087 40 1 -0.9285 5.9463 -0.8960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749045836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:59 Heat of formation + Delta-G solvation = -7.871871 kcal Electronic energy + Delta-G solvation = -21005.589193 eV Core-core repulsion = 17978.085553 eV Total energy + Delta-G solvation = -3027.503640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.80862 -38.62464 -35.58051 -34.51067 -32.71112 -31.45684 -30.57011 -29.64039 -29.11360 -25.31916 -24.57162 -22.44155 -22.02849 -21.76311 -19.79154 -18.78485 -17.12038 -16.40133 -15.95567 -15.46091 -15.00764 -14.46255 -14.41408 -14.14417 -13.92256 -13.30096 -13.11854 -13.07098 -12.73202 -12.59216 -12.44315 -12.33670 -12.31892 -11.81150 -11.69814 -11.37215 -11.24514 -11.07412 -10.73209 -10.61960 -10.15253 -9.85197 -9.33888 -9.08641 -8.88325 -8.63634 -8.60091 -8.36544 -8.27313 -6.11428 -4.11126 1.66936 1.70814 1.71727 3.25173 3.33492 3.35712 3.71715 3.82457 4.17490 4.37571 5.00210 5.08593 5.18577 5.19338 5.22828 5.28930 5.37879 5.44782 5.59520 5.75717 5.82318 5.84265 5.84878 6.01103 6.07350 6.08686 6.24376 6.30996 6.33939 6.43933 6.65833 6.74550 6.76723 6.77644 6.85375 6.94195 7.07257 7.31336 7.37287 7.64912 8.17391 8.44035 8.81911 8.94713 9.49372 11.01346 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.011242 B = 0.007748 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.024307 B = 3613.050608 C = 5330.145151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.085 4.085 3 C -0.184 4.184 4 C -0.115 4.115 5 C 0.548 3.452 6 O -0.546 6.546 7 N -0.697 5.697 8 C 0.194 3.806 9 H 0.092 0.908 10 C -0.014 4.014 11 C -0.520 4.520 12 H 0.076 0.924 13 C 0.071 3.929 14 N -0.898 5.898 15 Si 0.875 3.125 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.075 4.075 20 C -0.109 4.109 21 C -0.125 4.125 22 C -0.134 4.134 23 C -0.122 4.122 24 C -0.108 4.108 25 H 0.078 0.922 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.400 0.600 33 H 0.023 0.977 34 H 0.029 0.971 35 H 0.264 0.736 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.828 -7.002 -13.406 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.105 4.105 3 C -0.187 4.187 4 C -0.172 4.172 5 C 0.336 3.664 6 O -0.426 6.426 7 N -0.347 5.347 8 C 0.090 3.910 9 H 0.110 0.890 10 C -0.052 4.052 11 C -0.558 4.558 12 H 0.094 0.906 13 C -0.131 4.131 14 N -0.536 5.536 15 Si 0.702 3.298 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.076 4.076 20 C -0.127 4.127 21 C -0.143 4.143 22 C -0.152 4.152 23 C -0.141 4.141 24 C -0.126 4.126 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.136 0.864 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.236 0.764 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.577 -6.903 -13.226 15.140 hybrid contribution 1.046 0.923 -0.211 1.411 sum -1.531 -5.981 -13.437 14.787 Atomic orbital electron populations 1.20969 0.91932 1.00222 1.04222 1.23494 0.97102 0.96424 0.93494 1.21566 0.96358 0.93573 1.07226 1.20773 0.91162 1.02414 1.02829 1.18329 0.87287 0.84184 0.76585 1.90728 1.13587 1.87629 1.50694 1.45860 1.10333 1.05072 1.73388 1.19935 0.97143 0.83878 0.90083 0.89042 1.19872 0.94666 0.93387 0.97228 1.21020 1.32091 1.10224 0.92478 0.90597 1.24985 0.95819 0.97649 0.94636 1.69903 1.39126 1.37856 1.06723 0.86863 0.78921 0.84048 0.79977 1.20191 1.21337 1.18983 1.20588 0.93680 0.96733 0.96624 1.20930 0.99254 1.00073 0.92466 1.21048 0.96791 1.00005 0.96472 1.21012 0.94462 1.01003 0.98721 1.21057 0.99271 1.00680 0.93045 1.21041 0.96215 0.98736 0.96624 0.90356 0.93646 0.90151 0.86353 0.90706 0.91654 0.91670 0.76401 0.95921 0.95287 0.92642 0.86564 0.86688 0.86778 0.86520 0.86033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 8.45 36.01 0.30 -1.32 16 2 C -0.09 -1.12 9.95 -36.12 -0.36 -1.48 16 3 C -0.18 -2.73 6.00 -102.85 -0.62 -3.35 16 4 C -0.11 -1.38 9.61 36.00 0.35 -1.03 16 5 C 0.55 10.08 7.67 -12.66 -0.10 9.99 16 6 O -0.55 -11.36 12.73 5.27 0.07 -11.30 16 7 N -0.70 -12.84 3.99 -56.12 -0.22 -13.06 16 8 C 0.19 3.90 2.11 -69.08 -0.15 3.75 16 9 H 0.09 2.03 7.44 -51.93 -0.39 1.65 16 10 C -0.01 -0.31 3.56 -27.88 -0.10 -0.41 16 11 C -0.52 -14.03 9.39 -34.44 -0.32 -14.36 16 12 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 15 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 19 C -0.07 -1.35 4.91 -104.62 -0.51 -1.86 16 20 C -0.11 -1.77 9.32 -39.58 -0.37 -2.13 16 21 C -0.13 -1.77 10.05 -39.59 -0.40 -2.17 16 22 C -0.13 -1.82 10.05 -39.58 -0.40 -2.21 16 23 C -0.12 -1.76 10.05 -39.59 -0.40 -2.16 16 24 C -0.11 -1.80 9.67 -39.59 -0.38 -2.19 16 25 H 0.08 1.20 7.22 -51.93 -0.37 0.82 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 1.28 7.22 -51.93 -0.37 0.91 16 28 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 31 H 0.06 0.75 6.71 -51.93 -0.35 0.40 16 32 H 0.40 6.82 6.70 -40.82 -0.27 6.54 16 33 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 34 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.12 1.75 7.73 -52.48 -0.41 1.35 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 39 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 40 H 0.12 1.95 8.04 -52.48 -0.42 1.53 16 LS Contribution 333.86 15.07 5.03 5.03 Total: -1.00 -31.31 333.86 -8.46 -39.77 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.89 Total: 8.42 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -3.55 Total: -19.06 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.55 Total: -39.11 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.07 Total: -11.30 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.31 -8.46 -39.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749045836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.903 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds