Wall clock time and date at job start Mon Mar 30 2020 01:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32994 * 119.99889 * 2 1 4 4 C 1.50694 * 119.99742 * 180.02562 * 3 2 1 5 5 C 1.47099 * 119.99892 * 359.97438 * 3 2 1 6 6 O 1.21610 * 120.00519 * 0.02562 * 5 3 2 7 7 N 1.34784 * 119.99647 * 180.02562 * 5 3 2 8 8 C 1.46494 * 119.99635 * 180.02562 * 7 5 3 9 9 H 1.08997 * 109.47706 * 34.99696 * 8 7 5 10 10 C 1.53004 * 109.46982 * 155.00372 * 8 7 5 11 11 C 1.50699 * 109.46636 * 294.99501 * 10 8 7 12 12 H 1.08000 * 120.00286 * 0.02562 * 11 10 8 13 13 C 1.37881 * 119.99998 * 179.97438 * 11 10 8 14 14 N 1.31511 * 120.00352 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 119.99798 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.46909 * 89.99775 * 15 13 11 17 17 H 1.48496 * 109.47214 * 210.00145 * 15 13 11 18 18 H 1.48496 * 109.47040 * 330.00353 * 15 13 11 19 19 C 1.50702 * 109.47343 * 274.99973 * 8 7 5 20 20 C 1.38241 * 119.99979 * 319.72979 * 19 8 7 21 21 C 1.38232 * 120.00070 * 179.80681 * 20 19 8 22 22 C 1.38233 * 120.00035 * 0.40353 * 21 20 19 23 23 C 1.38234 * 119.99826 * 359.84920 * 22 21 20 24 24 C 1.38229 * 120.00616 * 140.00252 * 19 8 7 25 25 H 1.09002 * 109.46986 * 60.00170 * 1 2 3 26 26 H 1.08997 * 109.46683 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46827 * 300.00167 * 1 2 3 28 28 H 1.07997 * 119.99690 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47280 * 269.99860 * 4 3 2 30 30 H 1.09005 * 109.47415 * 30.00149 * 4 3 2 31 31 H 1.09002 * 109.46945 * 149.99418 * 4 3 2 32 32 H 0.96995 * 120.00015 * 359.72716 * 7 5 3 33 33 H 1.09002 * 109.47373 * 54.99720 * 10 8 7 34 34 H 1.09001 * 109.47302 * 175.00215 * 10 8 7 35 35 H 0.96997 * 120.00062 * 179.97438 * 14 13 11 36 36 H 1.08008 * 119.99995 * 359.97438 * 20 19 8 37 37 H 1.07998 * 119.99900 * 180.22916 * 21 20 19 38 38 H 1.08003 * 119.99820 * 179.83596 * 22 21 20 39 39 H 1.08003 * 119.99753 * 179.97438 * 23 22 21 40 40 H 1.08005 * 119.99704 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1517 -0.0006 5 6 1.4365 2.4257 -0.0006 6 8 0.2204 2.4257 -0.0006 7 7 2.1104 3.5929 -0.0011 8 6 1.3779 4.8616 -0.0011 9 1 0.4674 4.7555 0.5886 10 6 2.2554 5.9571 0.6079 11 6 2.5127 5.6454 2.0596 12 1 2.0929 4.7548 2.5034 13 6 3.2851 6.4966 2.8211 14 7 3.5102 6.2244 4.0879 15 14 4.0120 8.0367 2.0534 16 1 3.0582 9.1644 2.2082 17 1 5.2897 8.3723 2.7316 18 1 4.2657 7.7977 0.6099 19 6 1.0189 5.2344 -1.4164 20 6 1.9294 5.0317 -2.4367 21 6 1.5986 5.3700 -3.7356 22 6 0.3606 5.9187 -4.0130 23 6 -0.5479 6.1262 -2.9920 24 6 -0.2186 5.7843 -1.6937 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.0470 -0.9353 -0.0004 29 1 4.0427 1.1515 1.0269 30 1 4.0421 0.2619 -0.5148 31 1 4.0421 2.0418 -0.5145 32 1 3.0804 3.5929 0.0029 33 1 3.2037 6.0027 0.0724 34 1 1.7460 6.9174 0.5273 35 1 4.0539 6.8231 4.6235 36 1 2.8982 4.6065 -2.2195 37 1 2.3086 5.2082 -4.5332 38 1 0.1032 6.1854 -5.0274 39 1 -1.5151 6.5553 -3.2087 40 1 -0.9285 5.9463 -0.8960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749045836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:58 Heat of formation + Delta-G solvation = -25.931391 kcal Electronic energy + Delta-G solvation = -21006.372312 eV Core-core repulsion = 17978.085553 eV Total energy + Delta-G solvation = -3028.286760 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.20844 -39.87218 -37.04870 -35.78702 -34.73736 -32.87912 -31.73174 -31.01950 -30.55398 -26.94272 -25.74056 -23.66567 -23.59852 -23.12896 -21.25926 -20.17489 -19.06627 -17.75168 -17.34331 -16.86945 -16.38503 -16.16468 -15.71573 -15.48265 -15.09787 -14.81632 -14.50547 -14.39594 -14.19247 -13.88545 -13.79009 -13.63497 -13.51418 -13.41969 -13.02939 -12.80338 -12.53563 -12.42438 -12.31275 -11.94370 -11.74287 -11.73436 -11.43634 -10.80532 -10.49367 -10.14903 -9.79348 -9.73109 -9.54229 -8.29301 -6.34341 0.47314 0.52221 0.54376 1.36296 1.37142 1.48495 2.32656 2.34453 2.46161 2.95782 3.06401 3.83729 3.94772 3.99990 4.01794 4.19399 4.31151 4.34603 4.40195 4.56223 4.59156 4.71954 4.75555 4.79286 4.84938 4.90156 4.99087 5.06480 5.13354 5.16869 5.25343 5.25986 5.51184 5.53830 5.60450 5.63144 5.64528 5.70616 5.88822 6.16610 6.24744 6.70476 6.75850 7.29530 7.38601 8.87079 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.011242 B = 0.007748 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.024307 B = 3613.050608 C = 5330.145151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.066 4.066 3 C -0.208 4.208 4 C -0.109 4.109 5 C 0.535 3.465 6 O -0.581 6.581 7 N -0.696 5.696 8 C 0.204 3.796 9 H 0.053 0.947 10 C -0.004 4.004 11 C -0.521 4.521 12 H 0.030 0.970 13 C 0.012 3.988 14 N -0.947 5.947 15 Si 0.945 3.055 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.243 1.243 19 C -0.099 4.099 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.132 4.132 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.162 0.838 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.406 0.594 33 H 0.036 0.964 34 H 0.028 0.972 35 H 0.266 0.734 36 H 0.122 0.878 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.143 0.857 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.677 -7.099 -16.753 18.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.086 4.086 3 C -0.211 4.211 4 C -0.166 4.166 5 C 0.326 3.674 6 O -0.464 6.464 7 N -0.346 5.346 8 C 0.099 3.901 9 H 0.071 0.929 10 C -0.042 4.042 11 C -0.559 4.559 12 H 0.048 0.952 13 C -0.185 4.185 14 N -0.587 5.587 15 Si 0.769 3.231 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.166 1.166 19 C -0.100 4.100 20 C -0.139 4.139 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.140 4.140 24 C -0.151 4.151 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.180 0.820 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.243 0.757 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.165 0.835 38 H 0.169 0.831 39 H 0.161 0.839 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.418 -7.010 -16.590 18.066 hybrid contribution 0.557 0.858 0.840 1.324 sum -0.862 -6.151 -15.750 16.931 Atomic orbital electron populations 1.20922 0.92904 1.01569 1.01958 1.23900 0.96639 0.97522 0.90511 1.21670 0.97897 0.92050 1.09460 1.20781 0.88912 1.04041 1.02873 1.19072 0.87239 0.85352 0.75724 1.90705 1.15163 1.88205 1.52330 1.45829 1.10533 1.04811 1.73402 1.19531 0.95120 0.83955 0.91499 0.92874 1.19724 0.95673 0.94249 0.94518 1.21184 1.31324 1.08561 0.94808 0.95201 1.25898 0.96339 1.01308 0.94965 1.70060 1.40510 1.39582 1.08543 0.85741 0.77981 0.79280 0.80140 1.19765 1.20882 1.16598 1.20389 0.95137 0.99010 0.95489 1.21089 0.99225 1.00485 0.93097 1.21442 0.97715 0.98717 0.96184 1.21482 0.93680 0.99195 1.00128 1.21382 1.00724 0.99918 0.92019 1.21174 0.95997 0.99895 0.97988 0.92186 0.90318 0.93040 0.82047 0.91382 0.88450 0.91652 0.75725 0.94585 0.95352 0.92483 0.85974 0.83464 0.83095 0.83892 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.22 8.45 71.24 0.60 -2.62 16 2 C -0.07 -1.64 9.95 24.52 0.24 -1.39 16 3 C -0.21 -6.09 6.00 -18.71 -0.11 -6.20 16 4 C -0.11 -2.46 9.61 71.23 0.68 -1.78 16 5 C 0.54 20.63 7.67 86.57 0.66 21.30 16 6 O -0.58 -25.81 12.73 -4.06 -0.05 -25.86 16 7 N -0.70 -26.84 3.99 -449.71 -1.79 -28.63 16 8 C 0.20 8.64 2.11 44.25 0.09 8.73 16 9 H 0.05 2.60 7.44 -2.39 -0.02 2.58 16 10 C 0.00 -0.18 3.56 29.85 0.11 -0.08 16 11 C -0.52 -29.39 9.39 25.60 0.24 -29.15 16 12 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 13 C 0.01 0.70 5.47 84.66 0.46 1.16 16 14 N -0.95 -58.56 13.96 21.45 0.30 -58.26 16 15 Si 0.95 43.21 27.47 68.60 1.88 45.10 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 18 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 19 C -0.10 -3.61 4.91 -19.87 -0.10 -3.71 16 20 C -0.12 -3.75 9.32 22.27 0.21 -3.54 16 21 C -0.12 -3.07 10.05 22.27 0.22 -2.85 16 22 C -0.13 -2.98 10.05 22.27 0.22 -2.75 16 23 C -0.12 -3.28 10.05 22.27 0.22 -3.06 16 24 C -0.13 -4.48 9.67 22.27 0.22 -4.26 16 25 H 0.06 1.88 7.22 -2.39 -0.02 1.86 16 26 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 1.72 7.22 -2.39 -0.02 1.71 16 28 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.10 1.55 8.07 -2.38 -0.02 1.54 16 31 H 0.06 1.44 6.71 -2.39 -0.02 1.43 16 32 H 0.41 14.27 6.70 -92.71 -0.62 13.64 16 33 H 0.04 1.57 7.20 -2.39 -0.02 1.55 16 34 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 35 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.12 3.53 7.73 -2.91 -0.02 3.50 16 37 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 38 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 40 H 0.11 3.84 8.04 -2.91 -0.02 3.81 16 Total: -1.00 -72.29 333.86 4.67 -67.62 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.35 Total: 30.23 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 3.98 Total: -30.19 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -1.49 Total: -86.89 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.05 Total: -25.86 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.10 kcal Total: -72.29 4.67 -67.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749045836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.691 kcal (2) G-P(sol) polarization free energy of solvation -72.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds