Wall clock time and date at job start Mon Mar 30 2020 01:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32990 * 119.99944 * 2 1 4 4 C 1.50694 * 120.00225 * 0.02562 * 3 2 1 5 5 C 1.47103 * 119.99745 * 179.97438 * 3 2 1 6 6 O 1.21610 * 120.00097 * 0.02562 * 5 3 2 7 7 N 1.34777 * 119.99793 * 180.02562 * 5 3 2 8 8 C 1.46503 * 120.00149 * 180.02562 * 7 5 3 9 9 H 1.09004 * 109.47168 * 34.98972 * 8 7 5 10 10 C 1.52991 * 109.47524 * 154.99756 * 8 7 5 11 11 C 1.50701 * 109.47311 * 294.99888 * 10 8 7 12 12 H 1.07998 * 119.99938 * 359.97438 * 11 10 8 13 13 C 1.37880 * 120.00142 * 179.97438 * 11 10 8 14 14 N 1.31507 * 119.99935 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99866 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47134 * 89.99742 * 15 13 11 17 17 H 1.48497 * 109.47446 * 209.99983 * 15 13 11 18 18 H 1.48506 * 109.47291 * 329.99886 * 15 13 11 19 19 C 1.50707 * 109.46961 * 274.99975 * 8 7 5 20 20 C 1.38240 * 119.99561 * 319.72616 * 19 8 7 21 21 C 1.38231 * 119.99675 * 179.78818 * 20 19 8 22 22 C 1.38239 * 119.99945 * 0.44114 * 21 20 19 23 23 C 1.38230 * 120.00016 * 359.80824 * 22 21 20 24 24 C 1.38231 * 120.00260 * 139.99418 * 19 8 7 25 25 H 1.09002 * 109.47152 * 299.99804 * 1 2 3 26 26 H 1.09001 * 109.46980 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47113 * 59.99886 * 1 2 3 28 28 H 1.08003 * 119.99742 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47287 * 89.99715 * 4 3 2 30 30 H 1.09002 * 109.47474 * 209.99861 * 4 3 2 31 31 H 1.09006 * 109.47089 * 330.00110 * 4 3 2 32 32 H 0.97004 * 120.00071 * 359.97438 * 7 5 3 33 33 H 1.08999 * 109.47360 * 55.00014 * 10 8 7 34 34 H 1.08997 * 109.47288 * 174.99704 * 10 8 7 35 35 H 0.97005 * 119.99914 * 179.97438 * 14 13 11 36 36 H 1.08003 * 120.00211 * 359.97438 * 20 19 8 37 37 H 1.08000 * 120.00259 * 180.27117 * 21 20 19 38 38 H 1.08004 * 119.99624 * 179.83305 * 22 21 20 39 39 H 1.08005 * 120.00036 * 180.02562 * 23 22 21 40 40 H 1.07999 * 120.00018 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4568 0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2510 0.0985 0.0006 7 7 4.3169 2.3189 0.0011 8 6 5.7819 2.3189 0.0011 9 1 6.1453 1.4772 -0.5886 10 6 6.2919 3.6264 -0.6080 11 6 5.8934 3.6935 -2.0597 12 1 5.3327 2.8842 -2.5037 13 6 6.2444 4.7880 -2.8212 14 7 6.9267 5.7737 -2.2805 15 14 5.7497 4.8714 -4.6205 16 1 4.4223 5.5264 -4.7391 17 1 6.7586 5.6571 -5.3755 18 1 5.6749 3.4968 -5.1776 19 6 6.2842 2.1945 1.4165 20 6 5.6533 2.8817 2.4367 21 6 6.1113 2.7641 3.7356 22 6 7.2058 1.9665 4.0130 23 6 7.8398 1.2835 2.9921 24 6 7.3791 1.3976 1.6938 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 2.0470 -0.9354 -0.0004 29 1 1.2372 2.7712 1.0284 30 1 2.0074 3.2166 -0.5133 31 1 0.4659 2.3266 -0.5129 32 1 3.8319 3.1590 0.0007 33 1 5.8574 4.4705 -0.0725 34 1 7.3782 3.6654 -0.5273 35 1 7.1740 6.5435 -2.8163 36 1 4.8008 3.5080 2.2193 37 1 5.6158 3.2975 4.5333 38 1 7.5653 1.8768 5.0276 39 1 8.6947 0.6600 3.2089 40 1 7.8744 0.8638 0.8962 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749045839.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:05 Heat of formation + Delta-G solvation = -15.673542 kcal Electronic energy + Delta-G solvation = -20772.678938 eV Core-core repulsion = 17744.836992 eV Total energy + Delta-G solvation = -3027.841946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.69089 -38.48765 -35.58178 -34.94725 -32.74057 -31.24412 -30.45131 -29.24119 -28.51169 -26.05274 -24.89176 -22.30326 -22.00005 -21.54304 -19.75225 -18.17241 -16.96508 -16.52321 -16.15320 -15.63794 -14.91003 -14.55183 -14.46777 -14.32558 -13.54547 -13.44695 -13.31092 -12.98209 -12.70806 -12.59865 -12.42138 -12.26514 -12.09737 -11.93335 -11.53014 -11.17864 -11.12421 -10.90894 -10.72114 -10.59817 -10.43240 -9.76804 -9.39726 -9.25311 -8.90510 -8.52437 -8.45196 -8.35071 -8.15872 -6.08848 -4.12178 1.63285 1.80580 1.82683 3.26740 3.34283 3.38762 3.75027 3.82212 4.26987 4.40309 5.00749 5.06573 5.23723 5.27882 5.28877 5.29636 5.34133 5.39817 5.49483 5.56413 5.72225 5.78314 5.86086 5.93445 5.96225 6.05555 6.20511 6.37996 6.45465 6.56580 6.60312 6.72371 6.86876 6.87468 6.95922 7.14298 7.42827 7.50207 7.64313 7.88077 8.19614 8.27210 8.82725 8.93822 9.52803 11.01680 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.009922 B = 0.007698 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.450669 B = 3636.423747 C = 5807.599343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.093 4.093 3 C -0.177 4.177 4 C -0.122 4.122 5 C 0.548 3.452 6 O -0.556 6.556 7 N -0.695 5.695 8 C 0.183 3.817 9 H 0.087 0.913 10 C 0.024 3.976 11 C -0.520 4.520 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.070 4.070 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.108 4.108 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.123 0.877 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.401 0.599 33 H 0.024 0.976 34 H 0.034 0.966 35 H 0.262 0.738 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.638 -6.263 9.106 14.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.113 4.113 3 C -0.180 4.180 4 C -0.178 4.178 5 C 0.335 3.665 6 O -0.436 6.436 7 N -0.343 5.343 8 C 0.079 3.921 9 H 0.105 0.895 10 C -0.014 4.014 11 C -0.558 4.558 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.072 4.072 20 C -0.126 4.126 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.141 4.141 24 C -0.127 4.127 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.141 0.859 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.237 0.763 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.101 -6.797 9.047 13.917 hybrid contribution -0.338 0.621 -1.014 1.236 sum -8.439 -6.175 8.033 13.186 Atomic orbital electron populations 1.20936 0.92526 1.02526 1.02314 1.23449 0.95863 0.97999 0.93954 1.21558 0.93369 0.96557 1.06538 1.20862 1.00089 0.94593 1.02276 1.18354 0.87441 0.84182 0.76502 1.90727 1.70102 1.31434 1.51323 1.45931 1.07520 1.08077 1.72817 1.20255 0.78603 1.02981 0.90307 0.89534 1.19390 0.97368 0.89080 0.95517 1.21144 1.35528 1.04330 0.94828 0.92383 1.24984 0.95032 0.95689 0.98426 1.69959 1.38428 1.08289 1.36392 0.86599 0.78229 0.78142 0.85108 1.20658 1.21204 1.19848 1.20559 0.95106 0.94928 0.96578 1.20907 1.00004 0.99250 0.92425 1.21036 0.97293 0.99517 0.96480 1.20990 0.96988 0.98710 0.98661 1.21037 0.99932 1.00051 0.93072 1.21019 0.96654 0.98455 0.96547 0.91112 0.91811 0.90914 0.85877 0.91140 0.90983 0.91209 0.76335 0.95754 0.94735 0.92874 0.86602 0.86747 0.86850 0.86612 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 8.91 36.01 0.32 -0.84 16 2 C -0.09 -1.22 9.84 -36.13 -0.36 -1.57 16 3 C -0.18 -2.62 6.00 -102.85 -0.62 -3.24 16 4 C -0.12 -1.42 9.14 36.00 0.33 -1.09 16 5 C 0.55 10.35 7.71 -12.66 -0.10 10.25 16 6 O -0.56 -12.31 15.88 5.27 0.08 -12.23 16 7 N -0.69 -13.10 3.99 -56.12 -0.22 -13.33 16 8 C 0.18 3.84 2.11 -69.08 -0.15 3.70 16 9 H 0.09 1.99 7.44 -51.93 -0.39 1.61 16 10 C 0.02 0.58 4.49 -27.89 -0.13 0.45 16 11 C -0.52 -13.91 8.84 -34.44 -0.30 -14.21 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 15 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 C -0.07 -1.35 4.91 -104.62 -0.51 -1.87 16 20 C -0.11 -1.86 9.32 -39.58 -0.37 -2.23 16 21 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 22 C -0.14 -1.97 10.05 -39.58 -0.40 -2.37 16 23 C -0.12 -1.90 10.05 -39.59 -0.40 -2.30 16 24 C -0.11 -1.94 9.67 -39.59 -0.38 -2.32 16 25 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.62 7.40 -51.93 -0.38 0.24 16 28 H 0.12 1.76 7.49 -52.48 -0.39 1.37 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.90 6.71 -51.93 -0.35 0.55 16 31 H 0.07 0.69 6.49 -51.93 -0.34 0.35 16 32 H 0.40 6.95 6.70 -40.82 -0.27 6.68 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 36 H 0.12 1.88 7.73 -52.48 -0.41 1.48 16 37 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 38 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 40 H 0.12 2.07 8.04 -52.49 -0.42 1.64 16 LS Contribution 339.44 15.07 5.12 5.12 Total: -1.00 -31.41 339.44 -8.73 -40.14 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.87 Total: 7.49 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -3.55 Total: -18.40 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.51 Total: -38.24 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.08 Total: -12.23 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.41 -8.73 -40.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749045839.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.466 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds