Wall clock time and date at job start Mon Mar 30 2020 01:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32990 * 119.99944 * 2 1 4 4 C 1.50694 * 120.00225 * 0.02562 * 3 2 1 5 5 C 1.47103 * 119.99745 * 179.97438 * 3 2 1 6 6 O 1.21610 * 120.00097 * 0.02562 * 5 3 2 7 7 N 1.34777 * 119.99793 * 180.02562 * 5 3 2 8 8 C 1.46503 * 120.00149 * 180.02562 * 7 5 3 9 9 H 1.09004 * 109.47168 * 34.98972 * 8 7 5 10 10 C 1.52991 * 109.47524 * 154.99756 * 8 7 5 11 11 C 1.50701 * 109.47311 * 294.99888 * 10 8 7 12 12 H 1.07998 * 119.99938 * 359.97438 * 11 10 8 13 13 C 1.37880 * 120.00142 * 179.97438 * 11 10 8 14 14 N 1.31507 * 119.99935 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99866 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47134 * 89.99742 * 15 13 11 17 17 H 1.48497 * 109.47446 * 209.99983 * 15 13 11 18 18 H 1.48506 * 109.47291 * 329.99886 * 15 13 11 19 19 C 1.50707 * 109.46961 * 274.99975 * 8 7 5 20 20 C 1.38240 * 119.99561 * 319.72616 * 19 8 7 21 21 C 1.38231 * 119.99675 * 179.78818 * 20 19 8 22 22 C 1.38239 * 119.99945 * 0.44114 * 21 20 19 23 23 C 1.38230 * 120.00016 * 359.80824 * 22 21 20 24 24 C 1.38231 * 120.00260 * 139.99418 * 19 8 7 25 25 H 1.09002 * 109.47152 * 299.99804 * 1 2 3 26 26 H 1.09001 * 109.46980 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47113 * 59.99886 * 1 2 3 28 28 H 1.08003 * 119.99742 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47287 * 89.99715 * 4 3 2 30 30 H 1.09002 * 109.47474 * 209.99861 * 4 3 2 31 31 H 1.09006 * 109.47089 * 330.00110 * 4 3 2 32 32 H 0.97004 * 120.00071 * 359.97438 * 7 5 3 33 33 H 1.08999 * 109.47360 * 55.00014 * 10 8 7 34 34 H 1.08997 * 109.47288 * 174.99704 * 10 8 7 35 35 H 0.97005 * 119.99914 * 179.97438 * 14 13 11 36 36 H 1.08003 * 120.00211 * 359.97438 * 20 19 8 37 37 H 1.08000 * 120.00259 * 180.27117 * 21 20 19 38 38 H 1.08004 * 119.99624 * 179.83305 * 22 21 20 39 39 H 1.08005 * 120.00036 * 180.02562 * 23 22 21 40 40 H 1.07999 * 120.00018 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4568 0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2510 0.0985 0.0006 7 7 4.3169 2.3189 0.0011 8 6 5.7819 2.3189 0.0011 9 1 6.1453 1.4772 -0.5886 10 6 6.2919 3.6264 -0.6080 11 6 5.8934 3.6935 -2.0597 12 1 5.3327 2.8842 -2.5037 13 6 6.2444 4.7880 -2.8212 14 7 6.9267 5.7737 -2.2805 15 14 5.7497 4.8714 -4.6205 16 1 4.4223 5.5264 -4.7391 17 1 6.7586 5.6571 -5.3755 18 1 5.6749 3.4968 -5.1776 19 6 6.2842 2.1945 1.4165 20 6 5.6533 2.8817 2.4367 21 6 6.1113 2.7641 3.7356 22 6 7.2058 1.9665 4.0130 23 6 7.8398 1.2835 2.9921 24 6 7.3791 1.3976 1.6938 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 2.0470 -0.9354 -0.0004 29 1 1.2372 2.7712 1.0284 30 1 2.0074 3.2166 -0.5133 31 1 0.4659 2.3266 -0.5129 32 1 3.8319 3.1590 0.0007 33 1 5.8574 4.4705 -0.0725 34 1 7.3782 3.6654 -0.5273 35 1 7.1740 6.5435 -2.8163 36 1 4.8008 3.5080 2.2193 37 1 5.6158 3.2975 4.5333 38 1 7.5653 1.8768 5.0276 39 1 8.6947 0.6600 3.2089 40 1 7.8744 0.8638 0.8962 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749045839.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:05 Heat of formation + Delta-G solvation = -33.181562 kcal Electronic energy + Delta-G solvation = -20773.438143 eV Core-core repulsion = 17744.836992 eV Total energy + Delta-G solvation = -3028.601151 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.16347 -39.82134 -36.98036 -36.32243 -34.75776 -32.68160 -31.72490 -30.64382 -29.86111 -27.16395 -26.59066 -23.84575 -23.52757 -22.85033 -21.27116 -19.52213 -18.64222 -17.95518 -17.66818 -17.14108 -16.52204 -16.29252 -15.72664 -15.63850 -14.95635 -14.58458 -14.46342 -14.28667 -14.20233 -14.03400 -13.70384 -13.50269 -13.33720 -13.25277 -12.98059 -12.80153 -12.64084 -12.46635 -12.16514 -12.13058 -11.89670 -11.61642 -11.36138 -10.88386 -10.59005 -10.12053 -9.83094 -9.76597 -9.53823 -8.22233 -6.32865 0.45197 0.50039 0.54057 1.37649 1.39537 1.50186 2.34428 2.38630 2.39183 2.96250 3.11688 3.82808 3.99161 4.01208 4.03960 4.19301 4.30395 4.33076 4.40268 4.50788 4.63070 4.73461 4.76196 4.77381 4.89021 4.93239 5.08876 5.10482 5.16182 5.18274 5.25985 5.39816 5.51961 5.59088 5.59265 5.62113 5.70178 5.75302 5.90813 6.14012 6.18552 6.71417 6.79133 7.33534 7.36448 8.88502 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.009922 B = 0.007698 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.450669 B = 3636.423747 C = 5807.599343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.074 4.074 3 C -0.203 4.203 4 C -0.114 4.114 5 C 0.540 3.460 6 O -0.599 6.599 7 N -0.691 5.691 8 C 0.198 3.802 9 H 0.054 0.946 10 C 0.039 3.961 11 C -0.532 4.532 12 H 0.050 0.950 13 C 0.012 3.988 14 N -0.924 5.924 15 Si 0.957 3.043 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.274 1.274 19 C -0.099 4.099 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.135 4.135 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.408 0.592 33 H 0.013 0.987 34 H 0.004 0.996 35 H 0.265 0.735 36 H 0.120 0.880 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.618 -6.240 10.347 16.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.094 4.094 3 C -0.206 4.206 4 C -0.170 4.170 5 C 0.330 3.670 6 O -0.483 6.483 7 N -0.339 5.339 8 C 0.092 3.908 9 H 0.072 0.928 10 C 0.002 3.998 11 C -0.570 4.570 12 H 0.069 0.931 13 C -0.187 4.187 14 N -0.564 5.564 15 Si 0.782 3.218 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.199 1.199 19 C -0.101 4.101 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.153 4.153 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.122 0.878 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.245 0.755 33 H 0.031 0.969 34 H 0.022 0.978 35 H 0.074 0.926 36 H 0.138 0.862 37 H 0.166 0.834 38 H 0.171 0.829 39 H 0.163 0.837 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.102 -6.759 10.293 15.927 hybrid contribution 0.311 0.531 -1.331 1.466 sum -9.790 -6.228 8.962 14.661 Atomic orbital electron populations 1.21024 0.88910 1.04169 1.03739 1.23757 0.98312 0.96538 0.90750 1.21535 0.90703 0.98832 1.09491 1.20868 1.00351 0.92300 1.03531 1.19116 0.89404 0.83197 0.75275 1.90689 1.71456 1.32689 1.53462 1.45830 1.06567 1.08754 1.72791 1.19746 0.80020 0.99497 0.91503 0.92772 1.19121 0.95331 0.90565 0.94826 1.21371 1.35414 1.04141 0.96055 0.93137 1.25779 0.94900 0.95256 1.02751 1.70067 1.39384 1.08879 1.38082 0.85569 0.78440 0.78026 0.79750 1.19181 1.20732 1.19913 1.20456 0.96608 0.97238 0.95759 1.21067 1.00346 0.99388 0.93209 1.21450 0.97322 0.99207 0.96143 1.21485 0.95975 0.96980 1.00182 1.21391 1.00591 1.00105 0.91992 1.21174 0.96957 0.99174 0.98025 0.89202 0.90262 0.89448 0.87791 0.89483 0.92388 0.88732 0.75537 0.96906 0.97787 0.92623 0.86237 0.83389 0.82897 0.83746 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.84 8.91 71.24 0.63 -1.20 16 2 C -0.07 -1.84 9.84 24.52 0.24 -1.60 16 3 C -0.20 -5.91 6.00 -18.71 -0.11 -6.02 16 4 C -0.11 -2.47 9.14 71.23 0.65 -1.82 16 5 C 0.54 21.26 7.71 86.57 0.67 21.92 16 6 O -0.60 -28.10 15.88 -4.06 -0.06 -28.17 16 7 N -0.69 -27.42 3.99 -449.70 -1.79 -29.21 16 8 C 0.20 8.91 2.11 44.24 0.09 9.00 16 9 H 0.05 2.74 7.44 -2.38 -0.02 2.72 16 10 C 0.04 2.02 4.49 29.85 0.13 2.15 16 11 C -0.53 -29.62 8.84 25.60 0.23 -29.40 16 12 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 13 C 0.01 0.67 5.46 84.66 0.46 1.13 16 14 N -0.92 -54.38 13.29 21.45 0.28 -54.09 16 15 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 19 C -0.10 -4.00 4.91 -19.86 -0.10 -4.10 16 20 C -0.12 -4.25 9.32 22.27 0.21 -4.04 16 21 C -0.12 -3.49 10.05 22.27 0.22 -3.27 16 22 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 23 C -0.12 -3.66 10.05 22.27 0.22 -3.44 16 24 C -0.13 -5.04 9.67 22.27 0.22 -4.83 16 25 H 0.09 1.10 8.10 -2.39 -0.02 1.08 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.09 1.15 7.40 -2.38 -0.02 1.13 16 28 H 0.10 2.99 7.49 -2.91 -0.02 2.97 16 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.41 6.71 -2.39 -0.02 1.40 16 31 H 0.09 1.56 6.49 -2.38 -0.02 1.55 16 32 H 0.41 14.77 6.70 -92.71 -0.62 14.15 16 33 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 36 H 0.12 3.93 7.73 -2.91 -0.02 3.91 16 37 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 38 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 39 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 40 H 0.11 4.17 8.04 -2.91 -0.02 4.14 16 Total: -1.00 -71.31 339.44 4.85 -66.46 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.40 Total: 27.78 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 3.99 Total: -28.66 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -1.51 Total: -83.31 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.06 Total: -28.17 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -71.31 4.85 -66.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749045839.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.281 kcal (2) G-P(sol) polarization free energy of solvation -71.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds