Wall clock time and date at job start Mon Mar 30 2020 02:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 120.00126 * 2 1 4 4 N 1.46506 * 109.47113 * 125.00006 * 3 2 1 5 5 C 1.34775 * 119.99936 * 89.99944 * 4 3 2 6 6 O 1.21589 * 119.99914 * 5.49166 * 5 4 3 7 7 C 1.47640 * 120.00030 * 185.49098 * 5 4 3 8 8 C 1.40008 * 119.90017 * 248.56159 * 7 5 4 9 9 C 1.36314 * 120.10977 * 180.25436 * 8 7 5 10 10 C 1.40885 * 119.89335 * 359.48063 * 9 8 7 11 11 C 1.41102 * 120.10689 * 180.29752 * 10 9 8 12 12 H 1.08004 * 120.00143 * 172.80991 * 11 10 9 13 13 C 1.40231 * 120.00163 * 352.80664 * 11 10 9 14 14 N 1.30639 * 119.99862 * 284.05374 * 13 11 10 15 15 Si 1.86803 * 119.99563 * 104.04569 * 13 11 10 16 16 H 1.48496 * 109.47437 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46576 * 120.00378 * 15 13 11 18 18 H 1.48500 * 109.46967 * 240.00223 * 15 13 11 19 19 C 1.40889 * 119.79073 * 0.27414 * 10 9 8 20 20 C 1.36319 * 119.89260 * 0.02562 * 19 10 9 21 21 C 1.46500 * 119.99975 * 270.00129 * 4 3 2 22 22 C 1.52995 * 109.46927 * 230.17167 * 21 4 3 23 23 C 1.52997 * 109.47307 * 350.17470 * 21 4 3 24 24 H 1.07995 * 119.99371 * 359.97438 * 1 2 3 25 25 H 1.07995 * 119.99915 * 180.02562 * 1 2 3 26 26 H 1.07999 * 120.00093 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47007 * 5.00299 * 3 2 1 28 28 H 1.08999 * 109.47236 * 244.99506 * 3 2 1 29 29 H 1.08005 * 119.94722 * 0.03325 * 8 7 5 30 30 H 1.07998 * 120.05642 * 179.74887 * 9 8 7 31 31 H 0.97007 * 119.99436 * 179.97438 * 14 13 11 32 32 H 1.08003 * 120.05667 * 180.02562 * 19 10 9 33 33 H 1.07998 * 119.94573 * 180.02562 * 20 19 10 34 34 H 1.09008 * 109.47155 * 110.17296 * 21 4 3 35 35 H 1.09007 * 109.46942 * 159.38132 * 22 21 4 36 36 H 1.08994 * 109.47525 * 279.37602 * 22 21 4 37 37 H 1.08994 * 109.47144 * 39.38310 * 22 21 4 38 38 H 1.09003 * 109.47012 * 332.81413 * 23 21 4 39 39 H 1.09003 * 109.47097 * 92.81109 * 23 21 4 40 40 H 1.08998 * 109.47168 * 212.81366 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3319 1.1315 5 6 4.2497 0.8661 0.9824 6 8 4.6424 0.5167 -0.1140 7 6 5.1487 0.7802 2.1504 8 6 6.2601 1.6270 2.2396 9 6 7.0958 1.5478 3.3135 10 6 6.8336 0.6194 4.3403 11 6 7.6922 0.5379 5.4570 12 1 7.4289 -0.0892 6.2961 13 6 8.8874 1.2710 5.4776 14 7 9.9118 0.8701 4.7728 15 14 9.0147 2.8209 6.5125 16 1 7.7258 3.0568 7.2113 17 1 10.0984 2.6591 7.5149 18 1 9.3213 3.9786 5.6344 19 6 5.7111 -0.2271 4.2487 20 6 4.8845 -0.1448 3.1678 21 6 2.5589 1.8649 2.4249 22 6 3.5821 2.8863 2.9256 23 6 1.1971 2.5436 2.2650 24 1 -0.5399 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6214 1.4026 -0.9313 29 1 6.4576 2.3418 1.4543 30 1 7.9551 2.1986 3.3794 31 1 10.7385 1.3775 4.7868 32 1 5.5058 -0.9401 5.0335 33 1 4.0236 -0.7930 3.0969 34 1 2.4766 1.0503 3.1445 35 1 3.1143 3.5369 3.6645 36 1 4.4232 2.3644 3.3819 37 1 3.9377 3.4853 2.0873 38 1 1.0878 2.9022 1.2415 39 1 0.4059 1.8269 2.4853 40 1 1.1273 3.3851 2.9542 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759007043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:41 Heat of formation + Delta-G solvation = 11.814366 kcal Electronic energy + Delta-G solvation = -21134.738510 eV Core-core repulsion = 18108.088529 eV Total energy + Delta-G solvation = -3026.649981 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.71527 -37.23620 -36.19302 -34.37447 -33.78276 -30.83772 -30.47834 -29.53015 -27.64978 -25.91673 -25.03726 -22.19196 -21.05542 -20.95314 -20.00388 -18.24973 -17.66445 -16.70417 -15.92750 -15.40658 -15.25157 -14.78138 -14.19168 -13.95894 -13.81723 -13.29574 -12.94309 -12.70405 -12.55624 -12.51138 -12.21455 -12.03703 -11.76071 -11.49264 -11.40166 -11.34566 -11.10232 -10.86912 -10.82385 -10.66083 -10.36038 -10.20221 -9.47587 -9.46253 -8.91082 -8.79945 -8.16649 -8.01866 -7.62094 -7.38491 -4.40229 2.24605 2.59510 2.77109 2.93753 3.09112 3.13528 3.53368 3.60253 3.68998 3.94851 4.93685 5.05028 5.20215 5.29693 5.36933 5.44369 5.47611 5.76875 5.86892 5.90390 6.00464 6.06892 6.15730 6.18655 6.26040 6.31688 6.51487 6.55907 6.63916 6.70448 6.82034 6.90222 7.04803 7.15483 7.22887 7.50727 7.73068 7.88044 7.91907 8.02125 8.11555 8.40271 8.64647 8.87538 9.01294 9.26247 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030381 B = 0.004736 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.394779 B = 5911.310034 C = 6204.552761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C 0.124 3.876 4 N -0.612 5.612 5 C 0.588 3.412 6 O -0.562 6.562 7 C -0.307 4.307 8 C -0.025 4.025 9 C -0.243 4.243 10 C 0.114 3.886 11 C -0.477 4.477 12 H 0.095 0.905 13 C 0.139 3.861 14 N -0.677 5.677 15 Si 0.869 3.131 16 H -0.244 1.244 17 H -0.268 1.268 18 H -0.262 1.262 19 C -0.249 4.249 20 C -0.034 4.034 21 C 0.149 3.851 22 C -0.173 4.173 23 C -0.169 4.169 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.296 0.704 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.839 4.554 -0.889 11.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.171 4.171 3 C 0.002 3.998 4 N -0.346 5.346 5 C 0.381 3.619 6 O -0.441 6.441 7 C -0.310 4.310 8 C -0.044 4.044 9 C -0.262 4.262 10 C 0.112 3.888 11 C -0.497 4.497 12 H 0.113 0.887 13 C -0.101 4.101 14 N -0.292 5.292 15 Si 0.688 3.312 16 H -0.166 1.166 17 H -0.193 1.193 18 H -0.186 1.186 19 C -0.268 4.268 20 C -0.053 4.053 21 C 0.046 3.954 22 C -0.231 4.231 23 C -0.226 4.226 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.125 0.875 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.377 4.316 -1.592 11.351 hybrid contribution 0.189 0.554 0.399 0.708 sum -10.188 4.870 -1.194 11.355 Atomic orbital electron populations 1.23731 0.95633 1.01509 1.02594 1.23434 0.96027 0.99606 0.98030 1.20684 0.92812 0.94988 0.91336 1.48259 1.12021 1.63368 1.10953 1.18848 0.80214 0.73895 0.88955 1.90642 1.75382 1.49608 1.28453 1.18342 1.02615 1.10705 0.99361 1.20019 0.92786 0.95794 0.95777 1.20302 1.02213 1.05502 0.98195 1.17280 0.91231 0.89753 0.90572 1.19538 1.01458 1.24868 1.03842 0.88705 1.26333 0.93813 0.98134 0.91805 1.70164 1.01974 1.33311 1.23712 0.86959 0.80727 0.82128 0.81384 1.16641 1.19292 1.18625 1.20280 1.00701 1.05656 1.00116 1.20023 0.96813 0.95627 0.92802 1.20859 0.93653 0.96102 0.84763 1.22594 1.01013 0.98545 1.00947 1.22411 0.96527 1.00923 1.02719 0.88744 0.88706 0.87529 0.89497 0.89500 0.89842 0.89379 0.89221 0.89055 0.89912 0.91186 0.92883 0.88473 0.93031 0.91282 0.92348 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.14 14.32 29.01 0.42 -1.73 16 2 C -0.15 -2.07 9.85 -36.02 -0.35 -2.42 16 3 C 0.12 1.81 5.39 -5.19 -0.03 1.78 16 4 N -0.61 -10.59 2.69 -168.64 -0.45 -11.05 16 5 C 0.59 12.80 6.75 -12.42 -0.08 12.72 16 6 O -0.56 -13.95 16.66 5.29 0.09 -13.86 16 7 C -0.31 -7.01 2.94 -104.73 -0.31 -7.32 16 8 C -0.02 -0.59 8.10 -39.61 -0.32 -0.91 16 9 C -0.24 -6.01 9.33 -39.27 -0.37 -6.38 16 10 C 0.11 2.86 5.74 -106.81 -0.61 2.25 16 11 C -0.48 -11.70 8.87 -37.75 -0.33 -12.04 16 12 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 13 C 0.14 3.13 3.67 -17.31 -0.06 3.06 16 14 N -0.68 -15.45 13.92 55.56 0.77 -14.68 16 15 Si 0.87 16.29 29.69 -169.99 -5.05 11.24 16 16 H -0.24 -4.67 7.11 56.52 0.40 -4.26 16 17 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 18 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 19 C -0.25 -5.92 9.73 -39.27 -0.38 -6.30 16 20 C -0.03 -0.76 8.28 -39.61 -0.33 -1.09 16 21 C 0.15 2.27 3.09 -67.93 -0.21 2.06 16 22 C -0.17 -2.82 8.04 37.15 0.30 -2.52 16 23 C -0.17 -1.93 9.07 37.16 0.34 -1.59 16 24 H 0.09 0.88 7.84 -52.49 -0.41 0.47 16 25 H 0.09 0.93 8.06 -52.49 -0.42 0.51 16 26 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 27 H 0.09 1.03 4.66 -51.93 -0.24 0.79 16 28 H 0.09 1.40 7.35 -51.93 -0.38 1.02 16 29 H 0.08 1.89 8.06 -52.48 -0.42 1.47 16 30 H 0.09 2.16 7.08 -52.49 -0.37 1.79 16 31 H 0.30 5.81 8.29 -40.82 -0.34 5.47 16 32 H 0.09 2.05 8.06 -52.48 -0.42 1.63 16 33 H 0.08 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.07 1.13 7.46 -51.92 -0.39 0.74 16 35 H 0.05 0.73 7.57 -51.93 -0.39 0.34 16 36 H 0.10 1.90 4.56 -51.93 -0.24 1.66 16 37 H 0.05 0.86 8.12 -51.93 -0.42 0.43 16 38 H 0.07 0.74 5.13 -51.93 -0.27 0.48 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.68 7.44 -51.93 -0.39 0.30 16 LS Contribution 329.44 15.07 4.96 4.96 Total: -1.00 -27.67 329.44 -7.61 -35.28 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.59 Total: 8.53 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -2.34 Total: -20.42 kcal Atomic # 7 Polarization: -26.04 SS G_CDS: 0.32 Total: -25.72 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 16.29 SS G_CDS: -5.05 Total: 11.24 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.67 -7.61 -35.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759007043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.091 kcal (2) G-P(sol) polarization free energy of solvation -27.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds