Wall clock time and date at job start Mon Mar 30 2020 02:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 120.00126 * 2 1 4 4 N 1.46506 * 109.47113 * 125.00006 * 3 2 1 5 5 C 1.34775 * 119.99936 * 89.99944 * 4 3 2 6 6 O 1.21589 * 119.99914 * 5.49166 * 5 4 3 7 7 C 1.47640 * 120.00030 * 185.49098 * 5 4 3 8 8 C 1.40008 * 119.90017 * 248.56159 * 7 5 4 9 9 C 1.36314 * 120.10977 * 180.25436 * 8 7 5 10 10 C 1.40885 * 119.89335 * 359.48063 * 9 8 7 11 11 C 1.41102 * 120.10689 * 180.29752 * 10 9 8 12 12 H 1.08004 * 120.00143 * 172.80991 * 11 10 9 13 13 C 1.40231 * 120.00163 * 352.80664 * 11 10 9 14 14 N 1.30639 * 119.99862 * 284.05374 * 13 11 10 15 15 Si 1.86803 * 119.99563 * 104.04569 * 13 11 10 16 16 H 1.48496 * 109.47437 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46576 * 120.00378 * 15 13 11 18 18 H 1.48500 * 109.46967 * 240.00223 * 15 13 11 19 19 C 1.40889 * 119.79073 * 0.27414 * 10 9 8 20 20 C 1.36319 * 119.89260 * 0.02562 * 19 10 9 21 21 C 1.46500 * 119.99975 * 270.00129 * 4 3 2 22 22 C 1.52995 * 109.46927 * 230.17167 * 21 4 3 23 23 C 1.52997 * 109.47307 * 350.17470 * 21 4 3 24 24 H 1.07995 * 119.99371 * 359.97438 * 1 2 3 25 25 H 1.07995 * 119.99915 * 180.02562 * 1 2 3 26 26 H 1.07999 * 120.00093 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47007 * 5.00299 * 3 2 1 28 28 H 1.08999 * 109.47236 * 244.99506 * 3 2 1 29 29 H 1.08005 * 119.94722 * 0.03325 * 8 7 5 30 30 H 1.07998 * 120.05642 * 179.74887 * 9 8 7 31 31 H 0.97007 * 119.99436 * 179.97438 * 14 13 11 32 32 H 1.08003 * 120.05667 * 180.02562 * 19 10 9 33 33 H 1.07998 * 119.94573 * 180.02562 * 20 19 10 34 34 H 1.09008 * 109.47155 * 110.17296 * 21 4 3 35 35 H 1.09007 * 109.46942 * 159.38132 * 22 21 4 36 36 H 1.08994 * 109.47525 * 279.37602 * 22 21 4 37 37 H 1.08994 * 109.47144 * 39.38310 * 22 21 4 38 38 H 1.09003 * 109.47012 * 332.81413 * 23 21 4 39 39 H 1.09003 * 109.47097 * 92.81109 * 23 21 4 40 40 H 1.08998 * 109.47168 * 212.81366 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3319 1.1315 5 6 4.2497 0.8661 0.9824 6 8 4.6424 0.5167 -0.1140 7 6 5.1487 0.7802 2.1504 8 6 6.2601 1.6270 2.2396 9 6 7.0958 1.5478 3.3135 10 6 6.8336 0.6194 4.3403 11 6 7.6922 0.5379 5.4570 12 1 7.4289 -0.0892 6.2961 13 6 8.8874 1.2710 5.4776 14 7 9.9118 0.8701 4.7728 15 14 9.0147 2.8209 6.5125 16 1 7.7258 3.0568 7.2113 17 1 10.0984 2.6591 7.5149 18 1 9.3213 3.9786 5.6344 19 6 5.7111 -0.2271 4.2487 20 6 4.8845 -0.1448 3.1678 21 6 2.5589 1.8649 2.4249 22 6 3.5821 2.8863 2.9256 23 6 1.1971 2.5436 2.2650 24 1 -0.5399 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6214 1.4026 -0.9313 29 1 6.4576 2.3418 1.4543 30 1 7.9551 2.1986 3.3794 31 1 10.7385 1.3775 4.7868 32 1 5.5058 -0.9401 5.0335 33 1 4.0236 -0.7930 3.0969 34 1 2.4766 1.0503 3.1445 35 1 3.1143 3.5369 3.6645 36 1 4.4232 2.3644 3.3819 37 1 3.9377 3.4853 2.0873 38 1 1.0878 2.9022 1.2415 39 1 0.4059 1.8269 2.4853 40 1 1.1273 3.3851 2.9542 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759007043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:41 Heat of formation + Delta-G solvation = -2.092246 kcal Electronic energy + Delta-G solvation = -21135.341546 eV Core-core repulsion = 18108.088529 eV Total energy + Delta-G solvation = -3027.253017 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.27451 -38.98652 -37.72027 -36.03629 -34.97456 -32.30044 -32.07174 -31.37988 -28.96714 -27.37705 -26.42499 -23.81145 -22.80878 -22.47161 -21.18415 -19.73637 -19.45653 -18.13514 -17.37094 -17.06637 -16.57594 -16.32793 -15.85427 -15.56241 -15.11997 -14.69512 -14.41375 -14.30635 -14.10572 -13.89250 -13.66292 -13.39220 -13.20758 -13.15321 -12.81993 -12.66276 -12.53341 -12.23828 -12.13244 -11.97317 -11.91467 -11.56669 -11.30432 -10.77409 -10.63279 -10.26930 -9.83928 -9.55989 -9.49245 -9.15409 -6.27122 0.92010 1.15667 1.20712 1.28559 1.41706 1.56277 1.86916 1.99192 2.20779 2.40065 3.58641 3.82357 4.01780 4.05807 4.12451 4.22324 4.36713 4.39380 4.45834 4.59553 4.67862 4.86163 4.86561 4.88939 4.96461 5.03238 5.04234 5.17043 5.17519 5.34489 5.39205 5.51691 5.63804 5.66998 5.70727 5.89408 5.91504 6.00799 6.08966 6.17988 6.52019 6.55647 6.77147 7.00603 7.36624 7.61671 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030381 B = 0.004736 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.394779 B = 5911.310034 C = 6204.552761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.188 4.188 3 C 0.124 3.876 4 N -0.600 5.600 5 C 0.583 3.417 6 O -0.604 6.604 7 C -0.308 4.308 8 C -0.029 4.029 9 C -0.260 4.260 10 C 0.091 3.909 11 C -0.500 4.500 12 H 0.089 0.911 13 C 0.104 3.896 14 N -0.708 5.708 15 Si 0.944 3.056 16 H -0.250 1.250 17 H -0.246 1.246 18 H -0.258 1.258 19 C -0.266 4.266 20 C -0.029 4.029 21 C 0.143 3.857 22 C -0.170 4.170 23 C -0.159 4.159 24 H 0.122 0.878 25 H 0.109 0.891 26 H 0.079 0.921 27 H 0.124 0.876 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.312 0.688 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.160 6.122 -0.229 14.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.208 4.208 3 C 0.002 3.998 4 N -0.332 5.332 5 C 0.375 3.625 6 O -0.486 6.486 7 C -0.311 4.311 8 C -0.048 4.048 9 C -0.278 4.278 10 C 0.089 3.911 11 C -0.519 4.519 12 H 0.106 0.894 13 C -0.134 4.134 14 N -0.324 5.324 15 Si 0.760 3.240 16 H -0.173 1.173 17 H -0.170 1.170 18 H -0.182 1.182 19 C -0.284 4.284 20 C -0.048 4.048 21 C 0.041 3.959 22 C -0.227 4.227 23 C -0.216 4.216 24 H 0.140 0.860 25 H 0.127 0.873 26 H 0.097 0.903 27 H 0.141 0.859 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.125 0.875 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.728 5.890 -0.912 14.054 hybrid contribution 0.833 0.002 0.168 0.850 sum -11.894 5.892 -0.744 13.295 Atomic orbital electron populations 1.24019 0.94348 1.03476 0.97522 1.23148 0.97008 0.97888 1.02707 1.20887 0.92593 0.97075 0.89199 1.48239 1.10945 1.61354 1.12670 1.18710 0.81729 0.74221 0.87846 1.90613 1.76665 1.51880 1.29489 1.18507 1.02737 1.10222 0.99628 1.20102 0.93024 0.96086 0.95545 1.20276 1.02579 1.06071 0.98892 1.17527 0.92157 0.90428 0.91035 1.19748 1.02487 1.26053 1.03649 0.89363 1.27084 0.92811 1.00494 0.92997 1.70049 1.02940 1.34931 1.24466 0.85823 0.80841 0.77537 0.79756 1.17335 1.17000 1.18237 1.20430 1.01005 1.06037 1.00933 1.20142 0.96937 0.95463 0.92277 1.21063 0.95638 0.95810 0.83393 1.22507 1.00384 0.98756 1.01090 1.22352 0.93866 1.01507 1.03864 0.86009 0.87284 0.90316 0.85860 0.91698 0.89631 0.89963 0.87476 0.88452 0.88347 0.92087 0.90207 0.91993 0.93844 0.90268 0.90767 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 14.32 67.78 0.97 -1.83 16 2 C -0.19 -4.84 9.85 25.65 0.25 -4.59 16 3 C 0.12 3.43 5.39 85.63 0.46 3.89 16 4 N -0.60 -20.43 2.69 -805.73 -2.17 -22.60 16 5 C 0.58 25.93 6.75 86.73 0.59 26.51 16 6 O -0.60 -31.03 16.66 -4.00 -0.07 -31.09 16 7 C -0.31 -14.44 2.94 -19.93 -0.06 -14.50 16 8 C -0.03 -1.40 8.10 22.25 0.18 -1.22 16 9 C -0.26 -13.27 9.33 22.47 0.21 -13.06 16 10 C 0.09 4.71 5.74 -21.28 -0.12 4.58 16 11 C -0.50 -25.15 8.87 23.46 0.21 -24.94 16 12 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 13 C 0.10 4.71 3.67 85.35 0.31 5.03 16 14 N -0.71 -32.60 13.92 21.87 0.30 -32.29 16 15 Si 0.94 33.25 29.69 68.60 2.04 35.29 16 16 H -0.25 -9.03 7.11 99.48 0.71 -8.33 16 17 H -0.25 -7.79 7.11 99.48 0.71 -7.09 16 18 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 19 C -0.27 -13.01 9.73 22.47 0.22 -12.79 16 20 C -0.03 -1.36 8.28 22.25 0.18 -1.17 16 21 C 0.14 4.12 3.09 44.99 0.14 4.26 16 22 C -0.17 -5.37 8.04 71.98 0.58 -4.79 16 23 C -0.16 -2.98 9.07 71.98 0.65 -2.33 16 24 H 0.12 1.57 7.84 -2.91 -0.02 1.54 16 25 H 0.11 1.69 8.06 -2.91 -0.02 1.67 16 26 H 0.08 2.46 8.06 -2.91 -0.02 2.43 16 27 H 0.12 2.47 4.66 -2.39 -0.01 2.46 16 28 H 0.06 2.09 7.35 -2.39 -0.02 2.07 16 29 H 0.09 4.04 8.06 -2.91 -0.02 4.01 16 30 H 0.08 4.18 7.08 -2.91 -0.02 4.16 16 31 H 0.31 12.18 8.29 -92.70 -0.77 11.42 16 32 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.10 4.13 8.06 -2.91 -0.02 4.11 16 34 H 0.06 1.89 7.46 -2.38 -0.02 1.87 16 35 H 0.08 2.05 7.57 -2.38 -0.02 2.03 16 36 H 0.06 2.44 4.56 -2.39 -0.01 2.42 16 37 H 0.04 1.41 8.12 -2.39 -0.02 1.39 16 38 H 0.08 1.33 5.13 -2.39 -0.01 1.32 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.34 7.44 -2.39 -0.02 1.33 16 Total: -1.00 -62.87 329.44 5.90 -56.97 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 1.02 Total: 30.68 kcal Atomic # 6 Polarization: -41.73 SS G_CDS: 4.77 Total: -36.95 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -1.87 Total: -54.89 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.07 Total: -31.09 kcal Atomic # 14 Polarization: 33.25 SS G_CDS: 2.04 Total: 35.29 kcal Total: -62.87 5.90 -56.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759007043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.876 kcal (2) G-P(sol) polarization free energy of solvation -62.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds