Wall clock time and date at job start Mon Mar 30 2020 01:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46712 * 2 1 4 4 C 1.50700 * 120.00224 * 267.16390 * 3 2 1 5 5 C 1.33047 * 119.99853 * 87.16584 * 3 2 1 6 6 C 1.50698 * 120.00104 * 172.37155 * 5 3 2 7 7 C 1.47041 * 119.99747 * 352.37166 * 5 3 2 8 8 O 1.21626 * 120.00239 * 353.92348 * 7 5 3 9 9 N 1.34777 * 119.99952 * 173.91895 * 7 5 3 10 10 C 1.39102 * 120.00526 * 183.41906 * 9 7 5 11 11 C 1.39519 * 119.83048 * 318.85820 * 10 9 7 12 12 C 1.36355 * 120.16447 * 179.75726 * 11 10 9 13 13 C 1.40880 * 119.82957 * 0.52060 * 12 11 10 14 14 C 1.41132 * 120.16232 * 179.71302 * 13 12 11 15 15 H 1.08006 * 119.99901 * 163.28783 * 14 13 12 16 16 C 1.39907 * 120.00000 * 343.29733 * 14 13 12 17 17 N 1.30872 * 119.99891 * 325.76217 * 16 14 13 18 18 Si 1.86807 * 120.00097 * 145.76400 * 16 14 13 19 19 H 1.48501 * 109.46948 * 94.98999 * 18 16 14 20 20 H 1.48504 * 109.47037 * 214.98577 * 18 16 14 21 21 H 1.48497 * 109.46913 * 334.98840 * 18 16 14 22 22 C 1.40885 * 119.68052 * 359.73531 * 13 12 11 23 23 C 1.36359 * 119.82838 * 0.02562 * 22 13 12 24 24 H 1.08999 * 109.46783 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46911 * 299.99927 * 1 2 3 26 26 H 1.09004 * 109.46904 * 60.00156 * 1 2 3 27 27 H 1.08995 * 109.47085 * 119.99626 * 2 1 3 28 28 H 1.08993 * 109.47272 * 240.00679 * 2 1 3 29 29 H 1.08994 * 109.46861 * 5.19871 * 4 3 2 30 30 H 1.09001 * 109.46804 * 125.20029 * 4 3 2 31 31 H 1.08999 * 109.46991 * 245.20297 * 4 3 2 32 32 H 1.08992 * 109.47193 * 85.58388 * 6 5 3 33 33 H 1.09000 * 109.47366 * 205.58624 * 6 5 3 34 34 H 1.09008 * 109.46980 * 325.58638 * 6 5 3 35 35 H 0.97004 * 119.99776 * 3.41590 * 9 7 5 36 36 H 1.08005 * 119.91651 * 0.02562 * 11 10 9 37 37 H 1.08002 * 120.08556 * 180.23157 * 12 11 10 38 38 H 0.96999 * 119.99747 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.08761 * 179.97438 * 22 13 12 40 40 H 1.08003 * 119.91527 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3443 2.1098 -1.3035 5 6 2.2003 2.0671 1.1508 6 6 2.8620 3.4209 1.1652 7 6 1.7402 1.4602 2.4087 8 8 1.1086 0.4210 2.3872 9 7 2.0185 2.0554 3.5854 10 6 1.6455 1.4456 4.7787 11 6 0.4007 0.8239 4.8810 12 6 0.0302 0.2198 6.0460 13 6 0.9035 0.2341 7.1513 14 6 0.5247 -0.3838 8.3624 15 1 1.2714 -0.6128 9.1084 16 6 -0.8180 -0.6997 8.5964 17 7 -1.7635 0.0773 8.1326 18 14 -1.2612 -2.2307 9.5708 19 1 -1.4658 -1.8681 10.9963 20 1 -2.5105 -2.8200 9.0257 21 1 -0.1595 -3.2208 9.4651 22 6 2.1567 0.8685 7.0422 23 6 2.5155 1.4642 5.8692 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 2.0604 1.4629 -2.1334 30 1 1.7859 3.0440 -1.3634 31 1 3.4124 2.3209 -1.3563 32 1 2.1163 4.1919 0.9720 33 1 3.3176 3.5923 2.1405 34 1 3.6310 3.4576 0.3935 35 1 2.4789 2.9091 3.6002 36 1 -0.2694 0.8174 4.0340 37 1 -0.9322 -0.2643 6.1226 38 1 -2.6944 -0.1416 8.2952 39 1 2.8311 0.8837 7.8855 40 1 3.4757 1.9513 5.7841 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779746677.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:36 Heat of formation + Delta-G solvation = -12.246247 kcal Electronic energy + Delta-G solvation = -20596.771141 eV Core-core repulsion = 17569.077814 eV Total energy + Delta-G solvation = -3027.693327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.87967 -37.60921 -35.99753 -34.47567 -33.24609 -31.76162 -29.55128 -29.30991 -28.54503 -26.13261 -24.93604 -22.91738 -21.57751 -21.19342 -19.78699 -18.16983 -17.34071 -16.31751 -16.00748 -15.28562 -14.81543 -14.53291 -14.30171 -13.97703 -13.71271 -13.07141 -12.96818 -12.72355 -12.65147 -12.33380 -12.27125 -12.13278 -11.99272 -11.89176 -11.72456 -11.25673 -11.13263 -11.07254 -10.77179 -10.67865 -10.47321 -9.96805 -9.58660 -9.15557 -8.87699 -8.68083 -8.65649 -7.48861 -7.15850 -6.85304 -4.24527 1.55282 2.72915 3.05192 3.07737 3.13573 3.22199 3.77962 3.89280 3.94110 4.51713 4.81646 4.92793 5.14457 5.21867 5.38436 5.51101 5.57779 5.64573 5.69955 5.76306 5.80081 5.81281 5.92818 6.17313 6.20410 6.39897 6.43507 6.58235 6.64580 6.82556 6.90174 6.99871 7.12735 7.17354 7.34799 7.60823 7.76377 8.02399 8.06927 8.24457 8.39269 8.60677 8.86189 8.89030 9.08670 10.00437 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.029303 B = 0.004121 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.313520 B = 6793.450356 C = 7427.963091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.093 4.093 3 C -0.050 4.050 4 C -0.120 4.120 5 C -0.193 4.193 6 C -0.112 4.112 7 C 0.534 3.466 8 O -0.525 6.525 9 N -0.648 5.648 10 C -0.023 4.023 11 C -0.069 4.069 12 C -0.179 4.179 13 C 0.110 3.890 14 C -0.463 4.463 15 H 0.082 0.918 16 C 0.088 3.912 17 N -0.762 5.762 18 Si 0.896 3.104 19 H -0.269 1.269 20 H -0.273 1.273 21 H -0.257 1.257 22 C -0.227 4.227 23 C -0.093 4.093 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.391 0.609 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.284 0.716 39 H 0.094 0.906 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.194 4.487 -13.110 14.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.130 4.130 3 C -0.051 4.051 4 C -0.176 4.176 5 C -0.196 4.196 6 C -0.168 4.168 7 C 0.323 3.677 8 O -0.404 6.404 9 N -0.291 5.291 10 C -0.115 4.115 11 C -0.089 4.089 12 C -0.199 4.199 13 C 0.108 3.892 14 C -0.490 4.490 15 H 0.100 0.900 16 C -0.134 4.134 17 N -0.384 5.384 18 Si 0.719 3.281 19 H -0.194 1.194 20 H -0.198 1.198 21 H -0.180 1.180 22 C -0.247 4.247 23 C -0.113 4.113 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.225 0.775 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.496 3.823 -13.129 14.394 hybrid contribution -0.026 -0.108 0.484 0.497 sum 4.471 3.714 -12.644 13.916 Atomic orbital electron populations 1.21577 0.94390 1.01508 1.01458 1.20843 0.97069 0.92310 1.02737 1.22300 0.93302 0.95884 0.93648 1.20924 1.01811 1.00421 0.94456 1.21291 1.06312 0.98638 0.93355 1.20745 0.99828 0.93800 1.02465 1.18305 0.81092 0.84537 0.83738 1.90733 1.39645 1.23221 1.86779 1.42895 1.58588 1.22811 1.04821 1.17021 0.96255 1.12191 0.86058 1.20336 0.93557 0.98101 0.96905 1.20763 1.01151 1.05726 0.92281 1.17583 0.90816 0.88159 0.92688 1.19521 0.92816 1.34408 1.02279 0.90041 1.25979 0.96324 0.96487 0.94636 1.69966 1.01903 1.32162 1.34375 0.86510 0.79098 0.82674 0.79818 1.19442 1.19810 1.18033 1.20414 0.99685 1.07730 0.96891 1.20070 0.96276 1.01133 0.93784 0.93043 0.91057 0.94344 0.88452 0.92813 0.91604 0.91047 0.90980 0.91375 0.91831 0.91432 0.77467 0.88446 0.87269 0.90510 0.88815 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.35 37.16 0.35 -1.56 16 2 C -0.09 -1.31 5.28 -27.88 -0.15 -1.45 16 3 C -0.05 -0.63 5.35 -101.15 -0.54 -1.17 16 4 C -0.12 -1.07 8.89 36.01 0.32 -0.75 16 5 C -0.19 -2.70 5.99 -102.86 -0.62 -3.31 16 6 C -0.11 -1.15 9.14 36.00 0.33 -0.82 16 7 C 0.53 9.83 7.38 -12.69 -0.09 9.74 16 8 O -0.52 -11.24 9.03 5.25 0.05 -11.19 16 9 N -0.65 -12.09 5.24 -10.83 -0.06 -12.14 16 10 C -0.02 -0.53 6.18 -83.61 -0.52 -1.05 16 11 C -0.07 -1.75 8.58 -39.78 -0.34 -2.09 16 12 C -0.18 -4.86 8.77 -39.26 -0.34 -5.20 16 13 C 0.11 2.99 5.63 -106.80 -0.60 2.39 16 14 C -0.46 -12.34 8.94 -37.86 -0.34 -12.68 16 15 H 0.08 2.08 8.03 -52.48 -0.42 1.66 16 16 C 0.09 2.22 4.79 -17.34 -0.08 2.13 16 17 N -0.76 -19.60 11.55 55.55 0.64 -18.96 16 18 Si 0.90 18.45 29.67 -169.99 -5.04 13.41 16 19 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 C -0.23 -5.63 9.74 -39.26 -0.38 -6.02 16 23 C -0.09 -2.10 9.90 -39.78 -0.39 -2.49 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.23 6.35 -51.93 -0.33 0.90 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.10 1.67 5.97 -51.93 -0.31 1.36 16 28 H 0.05 0.64 8.04 -51.93 -0.42 0.22 16 29 H 0.06 0.53 7.95 -51.93 -0.41 0.12 16 30 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.07 0.55 7.49 -51.93 -0.39 0.16 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.62 6.35 -51.93 -0.33 0.29 16 34 H 0.07 0.57 6.89 -51.92 -0.36 0.21 16 35 H 0.39 5.94 6.77 -40.82 -0.28 5.66 16 36 H 0.10 2.46 6.70 -52.48 -0.35 2.11 16 37 H 0.11 3.04 6.23 -52.49 -0.33 2.71 16 38 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 39 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 40 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 324.39 15.07 4.89 4.89 Total: -1.00 -29.44 324.39 -8.51 -37.96 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -5.59 Total: 10.37 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -3.40 Total: -24.34 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: 0.58 Total: -31.10 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.05 Total: -11.19 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.04 Total: 13.41 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.44 -8.51 -37.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779746677.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.712 kcal (2) G-P(sol) polarization free energy of solvation -29.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds