Wall clock time and date at job start Mon Mar 30 2020 01:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46712 * 2 1 4 4 C 1.50700 * 120.00224 * 267.16390 * 3 2 1 5 5 C 1.33047 * 119.99853 * 87.16584 * 3 2 1 6 6 C 1.50698 * 120.00104 * 172.37155 * 5 3 2 7 7 C 1.47041 * 119.99747 * 352.37166 * 5 3 2 8 8 O 1.21626 * 120.00239 * 353.92348 * 7 5 3 9 9 N 1.34777 * 119.99952 * 173.91895 * 7 5 3 10 10 C 1.39102 * 120.00526 * 183.41906 * 9 7 5 11 11 C 1.39519 * 119.83048 * 318.85820 * 10 9 7 12 12 C 1.36355 * 120.16447 * 179.75726 * 11 10 9 13 13 C 1.40880 * 119.82957 * 0.52060 * 12 11 10 14 14 C 1.41132 * 120.16232 * 179.71302 * 13 12 11 15 15 H 1.08006 * 119.99901 * 163.28783 * 14 13 12 16 16 C 1.39907 * 120.00000 * 343.29733 * 14 13 12 17 17 N 1.30872 * 119.99891 * 325.76217 * 16 14 13 18 18 Si 1.86807 * 120.00097 * 145.76400 * 16 14 13 19 19 H 1.48501 * 109.46948 * 94.98999 * 18 16 14 20 20 H 1.48504 * 109.47037 * 214.98577 * 18 16 14 21 21 H 1.48497 * 109.46913 * 334.98840 * 18 16 14 22 22 C 1.40885 * 119.68052 * 359.73531 * 13 12 11 23 23 C 1.36359 * 119.82838 * 0.02562 * 22 13 12 24 24 H 1.08999 * 109.46783 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46911 * 299.99927 * 1 2 3 26 26 H 1.09004 * 109.46904 * 60.00156 * 1 2 3 27 27 H 1.08995 * 109.47085 * 119.99626 * 2 1 3 28 28 H 1.08993 * 109.47272 * 240.00679 * 2 1 3 29 29 H 1.08994 * 109.46861 * 5.19871 * 4 3 2 30 30 H 1.09001 * 109.46804 * 125.20029 * 4 3 2 31 31 H 1.08999 * 109.46991 * 245.20297 * 4 3 2 32 32 H 1.08992 * 109.47193 * 85.58388 * 6 5 3 33 33 H 1.09000 * 109.47366 * 205.58624 * 6 5 3 34 34 H 1.09008 * 109.46980 * 325.58638 * 6 5 3 35 35 H 0.97004 * 119.99776 * 3.41590 * 9 7 5 36 36 H 1.08005 * 119.91651 * 0.02562 * 11 10 9 37 37 H 1.08002 * 120.08556 * 180.23157 * 12 11 10 38 38 H 0.96999 * 119.99747 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.08761 * 179.97438 * 22 13 12 40 40 H 1.08003 * 119.91527 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3443 2.1098 -1.3035 5 6 2.2003 2.0671 1.1508 6 6 2.8620 3.4209 1.1652 7 6 1.7402 1.4602 2.4087 8 8 1.1086 0.4210 2.3872 9 7 2.0185 2.0554 3.5854 10 6 1.6455 1.4456 4.7787 11 6 0.4007 0.8239 4.8810 12 6 0.0302 0.2198 6.0460 13 6 0.9035 0.2341 7.1513 14 6 0.5247 -0.3838 8.3624 15 1 1.2714 -0.6128 9.1084 16 6 -0.8180 -0.6997 8.5964 17 7 -1.7635 0.0773 8.1326 18 14 -1.2612 -2.2307 9.5708 19 1 -1.4658 -1.8681 10.9963 20 1 -2.5105 -2.8200 9.0257 21 1 -0.1595 -3.2208 9.4651 22 6 2.1567 0.8685 7.0422 23 6 2.5155 1.4642 5.8692 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 2.0604 1.4629 -2.1334 30 1 1.7859 3.0440 -1.3634 31 1 3.4124 2.3209 -1.3563 32 1 2.1163 4.1919 0.9720 33 1 3.3176 3.5923 2.1405 34 1 3.6310 3.4576 0.3935 35 1 2.4789 2.9091 3.6002 36 1 -0.2694 0.8174 4.0340 37 1 -0.9322 -0.2643 6.1226 38 1 -2.6944 -0.1416 8.2952 39 1 2.8311 0.8837 7.8855 40 1 3.4757 1.9513 5.7841 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779746677.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:35 Heat of formation + Delta-G solvation = -28.072638 kcal Electronic energy + Delta-G solvation = -20597.457425 eV Core-core repulsion = 17569.077814 eV Total energy + Delta-G solvation = -3028.379611 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.34691 -39.33517 -37.30442 -36.14002 -34.95974 -32.99115 -31.43521 -30.94757 -29.70337 -27.22359 -26.60859 -24.18236 -23.16509 -23.04879 -21.42415 -19.60356 -19.25339 -17.84931 -17.31086 -17.08427 -16.19201 -15.82202 -15.66683 -15.58796 -15.09423 -14.52717 -14.49519 -14.00447 -13.94614 -13.80321 -13.51268 -13.27290 -13.25757 -13.10813 -12.98008 -12.87295 -12.76704 -12.68381 -12.35755 -11.92552 -11.76655 -11.73451 -11.42420 -10.94994 -10.65599 -10.25594 -9.69804 -9.46204 -9.03798 -8.72104 -6.23372 0.40885 0.93886 1.14406 1.34922 1.45224 1.55666 2.15749 2.35647 2.51156 2.66654 3.70665 3.83905 3.90361 4.15314 4.34981 4.42199 4.44939 4.53960 4.56354 4.69713 4.77299 4.85254 4.91086 4.94049 4.99683 5.08295 5.12716 5.17153 5.21046 5.26261 5.33934 5.42819 5.50147 5.56795 5.64980 5.80050 5.94652 6.08110 6.13613 6.32448 6.63512 6.83598 6.87627 7.00655 7.53753 8.15553 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.029303 B = 0.004121 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.313520 B = 6793.450356 C = 7427.963091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 C -0.037 4.037 4 C -0.116 4.116 5 C -0.211 4.211 6 C -0.106 4.106 7 C 0.524 3.476 8 O -0.562 6.562 9 N -0.645 5.645 10 C -0.012 4.012 11 C -0.081 4.081 12 C -0.205 4.205 13 C 0.080 3.920 14 C -0.500 4.500 15 H 0.083 0.917 16 C 0.048 3.952 17 N -0.796 5.796 18 Si 0.972 3.028 19 H -0.254 1.254 20 H -0.266 1.266 21 H -0.259 1.259 22 C -0.238 4.238 23 C -0.089 4.089 24 H 0.047 0.953 25 H 0.035 0.965 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.410 0.590 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.293 0.707 39 H 0.108 0.892 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.739 5.466 -14.907 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.134 4.134 3 C -0.039 4.039 4 C -0.172 4.172 5 C -0.214 4.214 6 C -0.163 4.163 7 C 0.316 3.684 8 O -0.444 6.444 9 N -0.290 5.290 10 C -0.106 4.106 11 C -0.101 4.101 12 C -0.225 4.225 13 C 0.078 3.922 14 C -0.527 4.527 15 H 0.101 0.899 16 C -0.172 4.172 17 N -0.419 5.419 18 Si 0.792 3.208 19 H -0.178 1.178 20 H -0.191 1.191 21 H -0.182 1.182 22 C -0.258 4.258 23 C -0.109 4.109 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.248 0.752 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.126 0.874 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.063 4.845 -14.942 16.837 hybrid contribution -0.483 -0.390 0.880 1.077 sum 5.579 4.455 -14.062 15.771 Atomic orbital electron populations 1.21499 0.94893 1.01210 1.00874 1.20821 0.96669 0.93705 1.02193 1.22663 0.91058 0.94875 0.95297 1.21013 1.03390 1.00771 0.92010 1.21303 1.08255 1.00728 0.91116 1.20793 1.00429 0.91469 1.03602 1.19197 0.80120 0.84120 0.84968 1.90736 1.41150 1.25052 1.87435 1.42841 1.58921 1.23655 1.03624 1.17119 0.95058 1.10603 0.87795 1.20369 0.94797 0.98975 0.96007 1.20676 1.00941 1.07469 0.93425 1.17911 0.92032 0.89274 0.93028 1.19783 0.93960 1.36334 1.02626 0.89882 1.26856 0.95656 0.99032 0.95618 1.69981 1.02621 1.33788 1.35494 0.85360 0.78661 0.77985 0.78804 1.17780 1.19073 1.18237 1.20688 0.99203 1.07624 0.98319 1.20411 0.97590 1.00248 0.92669 0.93348 0.94572 0.91735 0.92200 0.90094 0.90345 0.89545 0.88779 0.90217 0.91617 0.88884 0.75186 0.89495 0.89342 0.89589 0.87441 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.35 71.98 0.67 -3.00 16 2 C -0.10 -2.64 5.28 29.85 0.16 -2.49 16 3 C -0.04 -0.86 5.35 -17.61 -0.09 -0.95 16 4 C -0.12 -1.54 8.89 71.24 0.63 -0.91 16 5 C -0.21 -5.49 5.99 -18.72 -0.11 -5.61 16 6 C -0.11 -1.80 9.14 71.24 0.65 -1.15 16 7 C 0.52 19.32 7.38 86.55 0.64 19.96 16 8 O -0.56 -25.10 9.03 -4.11 -0.04 -25.13 16 9 N -0.64 -23.67 5.24 -306.41 -1.61 -25.28 16 10 C -0.01 -0.58 6.18 38.60 0.24 -0.34 16 11 C -0.08 -4.33 8.58 22.14 0.19 -4.14 16 12 C -0.21 -11.77 8.77 22.48 0.20 -11.57 16 13 C 0.08 4.53 5.63 -21.27 -0.12 4.41 16 14 C -0.50 -27.63 8.94 23.39 0.21 -27.42 16 15 H 0.08 4.38 8.03 -2.91 -0.02 4.36 16 16 C 0.05 2.49 4.79 85.24 0.41 2.90 16 17 N -0.80 -42.55 11.55 21.82 0.25 -42.29 16 18 Si 0.97 38.58 29.67 68.60 2.04 40.62 16 19 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 20 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 22 C -0.24 -11.96 9.74 22.48 0.22 -11.74 16 23 C -0.09 -3.99 9.90 22.14 0.22 -3.77 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.04 1.29 6.35 -2.39 -0.02 1.27 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 2.12 5.97 -2.39 -0.01 2.10 16 28 H 0.08 1.74 8.04 -2.39 -0.02 1.72 16 29 H 0.08 0.89 7.95 -2.39 -0.02 0.87 16 30 H 0.09 0.98 8.08 -2.39 -0.02 0.96 16 31 H 0.09 0.93 7.49 -2.39 -0.02 0.91 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.07 6.35 -2.39 -0.02 1.06 16 34 H 0.09 1.11 6.89 -2.38 -0.02 1.10 16 35 H 0.41 11.71 6.77 -92.70 -0.63 11.08 16 36 H 0.09 4.70 6.70 -2.91 -0.02 4.68 16 37 H 0.09 5.30 6.23 -2.91 -0.02 5.28 16 38 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 39 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 40 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -68.58 324.39 5.18 -63.40 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.42 Total: 34.50 kcal Atomic # 6 Polarization: -49.92 SS G_CDS: 4.11 Total: -45.82 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -1.35 Total: -67.57 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.04 Total: -25.13 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.04 Total: 40.62 kcal Total: -68.58 5.18 -63.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779746677.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.331 kcal (2) G-P(sol) polarization free energy of solvation -68.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds