Wall clock time and date at job start Mon Mar 30 2020 01:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50696 * 109.47386 * 2 1 4 4 C 1.50700 * 120.00518 * 276.61979 * 3 2 1 5 5 C 1.33161 * 119.99804 * 96.61224 * 3 2 1 6 6 C 1.50701 * 119.99813 * 352.70927 * 5 3 2 7 7 C 1.46899 * 120.00093 * 172.70732 * 5 3 2 8 8 O 1.21656 * 119.99831 * 330.83677 * 7 5 3 9 9 N 1.34776 * 120.00145 * 151.11397 * 7 5 3 10 10 C 1.36871 * 120.00056 * 127.91070 * 9 7 5 11 11 H 1.08006 * 119.99699 * 155.38210 * 10 9 7 12 12 C 1.38994 * 120.00328 * 335.37916 * 10 9 7 13 13 N 1.31377 * 119.99549 * 350.93137 * 12 10 9 14 14 Si 1.86795 * 120.00306 * 170.93265 * 12 10 9 15 15 H 1.48502 * 109.47174 * 59.99905 * 14 12 10 16 16 H 1.48500 * 109.47258 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46999 * 300.00126 * 14 12 10 18 18 C 1.39695 * 119.99384 * 307.90915 * 9 7 5 19 19 C 1.38984 * 120.08417 * 353.56924 * 18 9 7 20 20 C 1.38077 * 119.91748 * 179.81420 * 19 18 9 21 21 C 1.38316 * 120.07998 * 0.44410 * 20 19 18 22 22 C 1.38305 * 120.16351 * 359.78737 * 21 20 19 23 23 C 1.38081 * 120.07886 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47561 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47428 * 299.99348 * 1 2 3 26 26 H 1.09005 * 109.47535 * 59.99909 * 1 2 3 27 27 H 1.09006 * 109.46954 * 240.00610 * 2 1 3 28 28 H 1.08993 * 109.47637 * 120.00558 * 2 1 3 29 29 H 1.09007 * 109.46560 * 270.03633 * 4 3 2 30 30 H 1.08997 * 109.47055 * 30.02777 * 4 3 2 31 31 H 1.08995 * 109.47364 * 150.03502 * 4 3 2 32 32 H 1.08999 * 109.46911 * 184.88594 * 6 5 3 33 33 H 1.09000 * 109.46878 * 304.88598 * 6 5 3 34 34 H 1.09000 * 109.47170 * 64.88506 * 6 5 3 35 35 H 0.97003 * 119.99345 * 185.01643 * 13 12 10 36 36 H 1.07997 * 120.04045 * 0.02562 * 19 18 9 37 37 H 1.08002 * 119.95934 * 180.21654 * 20 19 18 38 38 H 1.08004 * 119.91668 * 179.77199 * 21 20 19 39 39 H 1.08002 * 119.96183 * 179.97438 * 22 21 20 40 40 H 1.08003 * 120.03870 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.1417 2.1814 -1.2963 5 6 2.3794 2.0042 1.1456 6 6 2.1173 1.3072 2.4558 7 6 3.0180 3.3270 1.1321 8 8 3.6980 3.6646 0.1815 9 7 2.8551 4.1646 2.1754 10 6 3.9477 4.7237 2.7812 11 1 3.8496 5.6560 3.3176 12 6 5.1834 4.0917 2.7063 13 7 5.2713 2.8777 2.2119 14 14 6.7190 4.9685 3.3083 15 1 6.5698 5.2948 4.7494 16 1 7.8987 4.0866 3.1195 17 1 6.9092 6.2214 2.5342 18 6 1.5711 4.4620 2.6384 19 6 0.4571 4.0041 1.9449 20 6 -0.8105 4.2968 2.4076 21 6 -0.9724 5.0525 3.5548 22 6 0.1339 5.5139 4.2448 23 6 1.4045 5.2219 3.7901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8898 29 1 3.1304 2.0239 -1.7276 30 1 1.3813 1.8258 -1.9915 31 1 1.9928 3.2445 -1.1075 32 1 2.3864 1.9686 3.2793 33 1 1.0601 1.0513 2.5259 34 1 2.7156 0.3978 2.5097 35 1 6.1202 2.4086 2.2262 36 1 0.5827 3.4172 1.0470 37 1 -1.6766 3.9384 1.8712 38 1 -1.9651 5.2830 3.9123 39 1 0.0037 6.1041 5.1399 40 1 2.2679 5.5829 4.3293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779881139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:18 Heat of formation + Delta-G solvation = 9.223678 kcal Electronic energy + Delta-G solvation = -21992.739373 eV Core-core repulsion = 18965.977052 eV Total energy + Delta-G solvation = -3026.762321 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.82724 -37.70356 -36.13432 -34.48846 -32.22534 -31.03536 -30.03311 -29.32470 -28.39983 -25.55540 -24.23668 -23.55834 -22.06843 -21.32069 -19.88765 -17.72286 -17.35985 -15.95886 -15.25096 -15.17198 -14.89816 -14.18080 -13.94137 -13.81484 -13.53665 -13.26485 -13.15449 -12.54724 -12.34745 -12.21907 -12.16238 -11.76727 -11.66549 -11.61799 -11.23385 -11.19683 -10.98494 -10.89304 -10.78328 -10.66122 -10.45380 -10.35675 -10.07444 -9.83156 -8.73128 -8.51106 -8.16151 -7.90957 -6.88452 -6.51118 -3.98128 2.08012 2.23059 2.49883 3.14809 3.20052 3.21198 3.96154 4.15025 4.62638 4.67202 5.17752 5.25247 5.30324 5.59707 5.64330 5.66023 5.68493 5.81536 5.88970 6.00768 6.07071 6.10325 6.21339 6.23583 6.26659 6.39371 6.42380 6.46870 6.50604 6.57834 6.74676 6.82048 6.83196 7.16758 7.21918 7.30002 7.33504 7.39104 7.44570 7.75888 7.95283 8.66756 8.93250 9.25731 9.66838 10.60418 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.009523 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.474760 B = 2939.590876 C = 4455.428611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.108 4.108 4 C -0.105 4.105 5 C -0.128 4.128 6 C -0.096 4.096 7 C 0.598 3.402 8 O -0.497 6.497 9 N -0.434 5.434 10 C -0.328 4.328 11 H 0.097 0.903 12 C 0.040 3.960 13 N -0.859 5.859 14 Si 0.936 3.064 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.271 1.271 18 C 0.204 3.796 19 C -0.208 4.208 20 C -0.078 4.078 21 C -0.209 4.209 22 C -0.081 4.081 23 C -0.185 4.185 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.277 0.723 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.501 -3.457 -0.032 9.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.110 4.110 4 C -0.162 4.162 5 C -0.131 4.131 6 C -0.152 4.152 7 C 0.392 3.608 8 O -0.372 6.372 9 N -0.138 5.138 10 C -0.455 4.455 11 H 0.115 0.885 12 C -0.167 4.167 13 N -0.494 5.494 14 Si 0.762 3.238 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.197 1.197 18 C 0.098 3.902 19 C -0.231 4.231 20 C -0.097 4.097 21 C -0.230 4.230 22 C -0.100 4.100 23 C -0.207 4.207 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.706 -3.476 -0.763 8.488 hybrid contribution 0.972 0.245 0.429 1.091 sum -6.734 -3.231 -0.333 7.476 Atomic orbital electron populations 1.21689 0.95289 1.01043 1.02178 1.20529 0.95733 0.93493 1.02346 1.21926 0.99251 0.95299 0.94497 1.20759 1.01213 0.99923 0.94291 1.21488 1.00010 0.96274 0.95339 1.20581 0.99560 0.99905 0.95189 1.17657 0.78889 0.83898 0.80339 1.90560 1.37349 1.76457 1.32792 1.41020 1.03283 1.42089 1.27450 1.19430 0.85735 1.06917 1.33368 0.88530 1.25333 0.99810 0.95310 0.96255 1.69428 1.27199 1.10445 1.42314 0.85841 0.79922 0.79165 0.78839 1.19736 1.20760 1.19663 1.18110 0.84920 0.94891 0.92298 1.20701 0.91879 1.07467 1.03065 1.20630 0.95711 0.97393 0.95926 1.20597 0.97566 1.05885 0.98924 1.20759 0.92356 0.98406 0.98475 1.20705 0.97250 1.05159 0.97620 0.92967 0.92353 0.92807 0.91613 0.91095 0.91258 0.93312 0.91602 0.91115 0.92584 0.92312 0.91201 0.86899 0.87513 0.87851 0.87410 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 37.15 0.37 -1.43 16 2 C -0.08 -1.23 5.65 -27.89 -0.16 -1.39 16 3 C -0.11 -2.02 5.11 -101.12 -0.52 -2.54 16 4 C -0.11 -1.93 8.58 36.01 0.31 -1.62 16 5 C -0.13 -2.74 3.67 -102.89 -0.38 -3.12 16 6 C -0.10 -1.89 7.93 36.01 0.29 -1.60 16 7 C 0.60 15.28 2.90 -12.76 -0.04 15.24 16 8 O -0.50 -14.13 14.17 5.23 0.07 -14.05 16 9 N -0.43 -11.07 2.23 -60.28 -0.13 -11.21 16 10 C -0.33 -8.73 8.76 -15.02 -0.13 -8.87 16 11 H 0.10 2.44 6.44 -52.48 -0.34 2.10 16 12 C 0.04 1.06 5.09 -17.47 -0.09 0.97 16 13 N -0.86 -23.67 10.99 55.50 0.61 -23.06 16 14 Si 0.94 20.78 29.57 -169.99 -5.03 15.76 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 18 C 0.20 4.60 5.51 -83.72 -0.46 4.14 16 19 C -0.21 -4.21 8.33 -39.36 -0.33 -4.54 16 20 C -0.08 -1.35 10.04 -39.61 -0.40 -1.75 16 21 C -0.21 -3.48 10.04 -39.53 -0.40 -3.88 16 22 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 23 C -0.18 -3.82 9.24 -39.36 -0.36 -4.18 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.76 7.52 -51.93 -0.39 0.37 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 1.04 6.43 -51.93 -0.33 0.71 16 29 H 0.07 1.33 8.11 -51.92 -0.42 0.91 16 30 H 0.05 0.73 8.12 -51.93 -0.42 0.30 16 31 H 0.07 1.35 6.47 -51.93 -0.34 1.02 16 32 H 0.07 1.58 6.97 -51.93 -0.36 1.22 16 33 H 0.06 0.96 7.46 -51.93 -0.39 0.57 16 34 H 0.06 1.11 7.44 -51.93 -0.39 0.72 16 35 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.11 2.30 5.65 -52.49 -0.30 2.01 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.10 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.12 2.57 6.35 -52.48 -0.33 2.23 16 LS Contribution 322.93 15.07 4.87 4.87 Total: -1.00 -29.72 322.93 -7.98 -37.70 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.68 Total: 6.38 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -2.69 Total: -16.38 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.48 Total: -34.27 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.07 Total: -14.05 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.72 -7.98 -37.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779881139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.923 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds