Wall clock time and date at job start Mon Mar 30 2020 01:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50696 * 109.47386 * 2 1 4 4 C 1.50700 * 120.00518 * 276.61979 * 3 2 1 5 5 C 1.33161 * 119.99804 * 96.61224 * 3 2 1 6 6 C 1.50701 * 119.99813 * 352.70927 * 5 3 2 7 7 C 1.46899 * 120.00093 * 172.70732 * 5 3 2 8 8 O 1.21656 * 119.99831 * 330.83677 * 7 5 3 9 9 N 1.34776 * 120.00145 * 151.11397 * 7 5 3 10 10 C 1.36871 * 120.00056 * 127.91070 * 9 7 5 11 11 H 1.08006 * 119.99699 * 155.38210 * 10 9 7 12 12 C 1.38994 * 120.00328 * 335.37916 * 10 9 7 13 13 N 1.31377 * 119.99549 * 350.93137 * 12 10 9 14 14 Si 1.86795 * 120.00306 * 170.93265 * 12 10 9 15 15 H 1.48502 * 109.47174 * 59.99905 * 14 12 10 16 16 H 1.48500 * 109.47258 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46999 * 300.00126 * 14 12 10 18 18 C 1.39695 * 119.99384 * 307.90915 * 9 7 5 19 19 C 1.38984 * 120.08417 * 353.56924 * 18 9 7 20 20 C 1.38077 * 119.91748 * 179.81420 * 19 18 9 21 21 C 1.38316 * 120.07998 * 0.44410 * 20 19 18 22 22 C 1.38305 * 120.16351 * 359.78737 * 21 20 19 23 23 C 1.38081 * 120.07886 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47561 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47428 * 299.99348 * 1 2 3 26 26 H 1.09005 * 109.47535 * 59.99909 * 1 2 3 27 27 H 1.09006 * 109.46954 * 240.00610 * 2 1 3 28 28 H 1.08993 * 109.47637 * 120.00558 * 2 1 3 29 29 H 1.09007 * 109.46560 * 270.03633 * 4 3 2 30 30 H 1.08997 * 109.47055 * 30.02777 * 4 3 2 31 31 H 1.08995 * 109.47364 * 150.03502 * 4 3 2 32 32 H 1.08999 * 109.46911 * 184.88594 * 6 5 3 33 33 H 1.09000 * 109.46878 * 304.88598 * 6 5 3 34 34 H 1.09000 * 109.47170 * 64.88506 * 6 5 3 35 35 H 0.97003 * 119.99345 * 185.01643 * 13 12 10 36 36 H 1.07997 * 120.04045 * 0.02562 * 19 18 9 37 37 H 1.08002 * 119.95934 * 180.21654 * 20 19 18 38 38 H 1.08004 * 119.91668 * 179.77199 * 21 20 19 39 39 H 1.08002 * 119.96183 * 179.97438 * 22 21 20 40 40 H 1.08003 * 120.03870 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.1417 2.1814 -1.2963 5 6 2.3794 2.0042 1.1456 6 6 2.1173 1.3072 2.4558 7 6 3.0180 3.3270 1.1321 8 8 3.6980 3.6646 0.1815 9 7 2.8551 4.1646 2.1754 10 6 3.9477 4.7237 2.7812 11 1 3.8496 5.6560 3.3176 12 6 5.1834 4.0917 2.7063 13 7 5.2713 2.8777 2.2119 14 14 6.7190 4.9685 3.3083 15 1 6.5698 5.2948 4.7494 16 1 7.8987 4.0866 3.1195 17 1 6.9092 6.2214 2.5342 18 6 1.5711 4.4620 2.6384 19 6 0.4571 4.0041 1.9449 20 6 -0.8105 4.2968 2.4076 21 6 -0.9724 5.0525 3.5548 22 6 0.1339 5.5139 4.2448 23 6 1.4045 5.2219 3.7901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8898 29 1 3.1304 2.0239 -1.7276 30 1 1.3813 1.8258 -1.9915 31 1 1.9928 3.2445 -1.1075 32 1 2.3864 1.9686 3.2793 33 1 1.0601 1.0513 2.5259 34 1 2.7156 0.3978 2.5097 35 1 6.1202 2.4086 2.2262 36 1 0.5827 3.4172 1.0470 37 1 -1.6766 3.9384 1.8712 38 1 -1.9651 5.2830 3.9123 39 1 0.0037 6.1041 5.1399 40 1 2.2679 5.5829 4.3293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779881139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:17 Heat of formation + Delta-G solvation = -6.048427 kcal Electronic energy + Delta-G solvation = -21993.401622 eV Core-core repulsion = 18965.977052 eV Total energy + Delta-G solvation = -3027.424570 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53671 -39.29057 -37.64423 -36.27899 -34.07765 -32.42530 -31.49461 -30.78868 -30.02915 -27.39694 -25.73150 -25.01097 -23.53322 -22.88036 -21.50195 -19.39624 -19.04755 -17.69459 -16.86645 -16.77119 -16.61072 -15.89075 -15.45147 -15.20069 -14.89201 -14.83747 -14.66445 -14.02017 -13.88416 -13.73482 -13.56619 -13.52275 -13.21273 -13.06063 -12.93165 -12.80430 -12.62781 -12.41377 -12.29187 -12.15843 -12.00267 -11.67104 -11.59288 -11.56526 -10.59099 -10.31514 -9.65205 -9.44886 -8.60235 -8.45565 -5.97742 0.49512 0.72496 0.96117 1.33133 1.41235 1.45132 2.15224 2.39037 2.95346 2.96201 3.37579 3.91410 4.00411 4.22544 4.26675 4.32780 4.36883 4.51166 4.52699 4.63457 4.73830 4.76337 4.81697 4.84819 4.90783 4.93386 5.06602 5.09814 5.12893 5.20802 5.27928 5.30792 5.35915 5.45658 5.68709 5.75011 5.76648 5.87168 5.89816 6.01714 6.36851 6.76233 7.07688 7.45009 7.82127 8.65272 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.009523 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.474760 B = 2939.590876 C = 4455.428611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 C -0.086 4.086 4 C -0.103 4.103 5 C -0.163 4.163 6 C -0.077 4.077 7 C 0.596 3.404 8 O -0.554 6.554 9 N -0.459 5.459 10 C -0.347 4.347 11 H 0.095 0.905 12 C -0.012 4.012 13 N -0.890 5.890 14 Si 0.997 3.003 15 H -0.254 1.254 16 H -0.281 1.281 17 H -0.276 1.276 18 C 0.173 3.827 19 C -0.214 4.214 20 C -0.074 4.074 21 C -0.188 4.188 22 C -0.078 4.078 23 C -0.203 4.203 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.272 0.728 36 H 0.106 0.894 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.738 -4.117 0.524 12.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 C -0.087 4.087 4 C -0.160 4.160 5 C -0.167 4.167 6 C -0.133 4.133 7 C 0.392 3.608 8 O -0.432 6.432 9 N -0.167 5.167 10 C -0.473 4.473 11 H 0.113 0.887 12 C -0.214 4.214 13 N -0.527 5.527 14 Si 0.820 3.180 15 H -0.178 1.178 16 H -0.206 1.206 17 H -0.202 1.202 18 C 0.071 3.929 19 C -0.237 4.237 20 C -0.093 4.093 21 C -0.208 4.208 22 C -0.097 4.097 23 C -0.226 4.226 24 H 0.097 0.903 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.160 0.840 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.019 -4.119 -0.158 11.765 hybrid contribution 1.693 0.524 0.259 1.791 sum -9.326 -3.595 0.101 9.995 Atomic orbital electron populations 1.21658 0.92874 1.02857 1.02210 1.20646 0.97642 0.90388 1.03346 1.22433 0.95977 0.96895 0.93402 1.20738 1.01685 0.98407 0.95136 1.21399 1.03006 0.95227 0.97039 1.20406 1.00982 0.98782 0.93155 1.18258 0.78113 0.84945 0.79474 1.90495 1.40374 1.77686 1.34665 1.41101 1.04015 1.43444 1.28138 1.19692 0.86974 1.07192 1.33471 0.88708 1.26217 1.02466 0.95957 0.96777 1.69557 1.27193 1.11715 1.44225 0.84922 0.76334 0.77602 0.79104 1.17836 1.20612 1.20188 1.18511 0.84580 0.96075 0.93746 1.20835 0.92551 1.07485 1.02785 1.21080 0.95470 0.96546 0.96186 1.21147 0.99125 1.03082 0.97457 1.21158 0.91136 0.97954 0.99428 1.20855 0.98615 1.05587 0.97514 0.90274 0.93023 0.92096 0.89720 0.91039 0.92649 0.89267 0.94525 0.94637 0.90077 0.92047 0.91812 0.87619 0.83786 0.83555 0.84040 0.87185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.89 71.98 0.71 -2.22 16 2 C -0.08 -2.24 5.65 29.84 0.17 -2.07 16 3 C -0.09 -3.17 5.11 -17.59 -0.09 -3.26 16 4 C -0.10 -3.81 8.58 71.24 0.61 -3.20 16 5 C -0.16 -7.23 3.67 -18.74 -0.07 -7.30 16 6 C -0.08 -3.08 7.93 71.24 0.56 -2.51 16 7 C 0.60 32.16 2.90 86.51 0.25 32.41 16 8 O -0.55 -33.69 14.17 -4.21 -0.06 -33.75 16 9 N -0.46 -24.77 2.23 -462.87 -1.03 -25.81 16 10 C -0.35 -19.57 8.76 84.09 0.74 -18.84 16 11 H 0.10 5.11 6.44 -2.91 -0.02 5.09 16 12 C -0.01 -0.65 5.09 84.94 0.43 -0.22 16 13 N -0.89 -51.99 10.99 21.67 0.24 -51.75 16 14 Si 1.00 44.58 29.57 68.60 2.03 46.61 16 15 H -0.25 -10.46 7.11 99.48 0.71 -9.76 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 C 0.17 8.03 5.51 38.25 0.21 8.24 16 19 C -0.21 -8.54 8.33 22.41 0.19 -8.35 16 20 C -0.07 -2.32 10.04 22.25 0.22 -2.09 16 21 C -0.19 -5.39 10.04 22.30 0.22 -5.16 16 22 C -0.08 -2.52 10.04 22.25 0.22 -2.30 16 23 C -0.20 -8.46 9.24 22.41 0.21 -8.25 16 24 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 1.17 7.52 -2.39 -0.02 1.15 16 26 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 28 H 0.07 1.95 6.43 -2.39 -0.02 1.93 16 29 H 0.05 2.20 8.11 -2.38 -0.02 2.18 16 30 H 0.09 2.49 8.12 -2.39 -0.02 2.47 16 31 H 0.04 1.56 6.47 -2.39 -0.02 1.55 16 32 H 0.03 1.65 6.97 -2.39 -0.02 1.63 16 33 H 0.08 2.71 7.46 -2.39 -0.02 2.70 16 34 H 0.06 2.35 7.44 -2.39 -0.02 2.33 16 35 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 36 H 0.11 4.33 5.65 -2.91 -0.02 4.32 16 37 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 38 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 39 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 40 H 0.11 4.76 6.35 -2.91 -0.02 4.75 16 Total: -1.00 -70.67 322.93 6.80 -63.87 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 1.03 Total: 25.95 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 4.59 Total: -25.12 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -0.79 Total: -77.56 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.06 Total: -33.75 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -70.67 6.80 -63.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779881139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.826 kcal (2) G-P(sol) polarization free energy of solvation -70.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds