Wall clock time and date at job start Mon Mar 30 2020 01:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47419 * 2 1 4 4 C 1.50706 * 119.99863 * 274.35530 * 3 2 1 5 5 C 1.33156 * 119.99944 * 94.35445 * 3 2 1 6 6 C 1.50696 * 119.99940 * 185.47833 * 5 3 2 7 7 C 1.46901 * 119.99951 * 5.47674 * 5 3 2 8 8 O 1.21656 * 119.99598 * 256.04850 * 7 5 3 9 9 N 1.34776 * 120.00098 * 76.04980 * 7 5 3 10 10 C 1.36871 * 120.00079 * 3.83908 * 9 7 5 11 11 H 1.08005 * 119.99700 * 306.55087 * 10 9 7 12 12 C 1.38990 * 119.99677 * 126.54491 * 10 9 7 13 13 N 1.31366 * 120.00436 * 3.35424 * 12 10 9 14 14 Si 1.86811 * 119.99946 * 183.35467 * 12 10 9 15 15 H 1.48497 * 109.46873 * 0.02562 * 14 12 10 16 16 H 1.48493 * 109.47055 * 120.00040 * 14 12 10 17 17 H 1.48497 * 109.47200 * 240.00260 * 14 12 10 18 18 C 1.39694 * 119.99523 * 183.84121 * 9 7 5 19 19 C 1.38990 * 120.07400 * 172.10730 * 18 9 7 20 20 C 1.38078 * 119.91595 * 180.29873 * 19 18 9 21 21 C 1.38308 * 120.07925 * 359.95063 * 20 19 18 22 22 C 1.38303 * 120.16511 * 0.04775 * 21 20 19 23 23 C 1.38075 * 120.07965 * 359.97438 * 22 21 20 24 24 H 1.08999 * 109.47232 * 299.99842 * 1 2 3 25 25 H 1.09002 * 109.47217 * 60.00175 * 1 2 3 26 26 H 1.09006 * 109.47183 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47485 * 239.99706 * 2 1 3 28 28 H 1.08998 * 109.46959 * 120.00271 * 2 1 3 29 29 H 1.09000 * 109.46801 * 274.72299 * 4 3 2 30 30 H 1.08994 * 109.47107 * 34.72497 * 4 3 2 31 31 H 1.09000 * 109.46502 * 154.72508 * 4 3 2 32 32 H 1.08992 * 109.47366 * 184.96265 * 6 5 3 33 33 H 1.09002 * 109.47281 * 304.96099 * 6 5 3 34 34 H 1.09004 * 109.47384 * 64.95669 * 6 5 3 35 35 H 0.97005 * 120.00337 * 185.00338 * 13 12 10 36 36 H 1.08004 * 120.04284 * 0.24851 * 19 18 9 37 37 H 1.08004 * 119.95631 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.91541 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.96177 * 179.97438 * 22 21 20 40 40 H 1.08009 * 120.03954 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1901 2.1642 -1.3014 5 6 2.3369 2.0193 1.1498 6 6 2.7206 3.4765 1.1623 7 6 2.2987 1.2590 2.4062 8 8 1.3722 1.4094 3.1802 9 7 3.2900 0.3949 2.7015 10 6 4.3710 0.2833 1.8694 11 1 4.2246 0.0874 0.8174 12 6 5.6569 0.4223 2.3782 13 7 5.8379 0.5950 3.6679 14 14 7.1279 0.3635 1.2283 15 1 6.6584 0.1615 -0.1660 16 1 7.8772 1.6424 1.3173 17 1 8.0173 -0.7595 1.6192 18 6 3.2141 -0.3867 3.8567 19 6 4.1477 -1.3919 4.0802 20 6 4.0659 -2.1666 5.2202 21 6 3.0572 -1.9428 6.1396 22 6 2.1264 -0.9435 5.9206 23 6 2.2016 -0.1650 4.7827 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.1635 1.9349 -1.7351 30 1 1.4038 1.8591 -1.9917 31 1 2.1172 3.2363 -1.1184 32 1 3.0183 3.7653 2.1702 33 1 3.5527 3.6390 0.4772 34 1 1.8685 4.0794 0.8483 35 1 6.7280 0.7645 4.0143 36 1 4.9356 -1.5672 3.3627 37 1 4.7908 -2.9481 5.3943 38 1 2.9959 -2.5501 7.0306 39 1 1.3399 -0.7718 6.6405 40 1 1.4742 0.6149 4.6121 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779881140.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:21 Heat of formation + Delta-G solvation = 13.350530 kcal Electronic energy + Delta-G solvation = -21935.281035 eV Core-core repulsion = 18908.697667 eV Total energy + Delta-G solvation = -3026.583368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.87324 -37.50798 -35.86910 -34.93149 -31.86624 -31.74914 -29.57716 -29.08918 -28.13709 -25.78639 -25.06900 -22.67273 -21.73042 -21.20734 -19.97119 -18.19517 -16.74823 -15.88380 -15.46878 -15.24426 -14.74477 -14.66647 -13.78632 -13.66039 -13.37712 -13.03158 -12.92873 -12.60494 -12.39950 -12.31123 -12.13127 -11.92766 -11.71422 -11.61617 -11.51429 -11.32969 -11.27772 -10.94412 -10.77514 -10.43334 -10.39089 -10.34609 -9.93495 -9.19060 -8.75103 -8.26981 -7.87725 -7.70617 -6.83345 -6.26418 -4.43399 2.38189 2.57293 2.66561 3.04350 3.13602 3.16733 3.75825 4.03766 4.61142 4.82148 5.18782 5.25959 5.37747 5.64574 5.73092 5.78698 5.85784 5.90805 5.94624 5.96317 6.07284 6.14127 6.19780 6.22254 6.24323 6.39042 6.39685 6.58226 6.64480 6.79408 6.81765 6.94578 7.05850 7.23306 7.32886 7.37890 7.59112 7.69838 7.74970 7.85720 8.15814 8.50637 8.89067 9.28119 9.66591 10.53903 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.009616 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.396393 B = 2911.090191 C = 4161.263809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.112 4.112 4 C -0.110 4.110 5 C -0.116 4.116 6 C -0.094 4.094 7 C 0.534 3.466 8 O -0.565 6.565 9 N -0.377 5.377 10 C -0.358 4.358 11 H 0.096 0.904 12 C 0.054 3.946 13 N -0.843 5.843 14 Si 0.914 3.086 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.188 3.812 19 C -0.088 4.088 20 C -0.125 4.125 21 C -0.174 4.174 22 C -0.123 4.123 23 C -0.192 4.192 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.273 0.727 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.353 0.128 -6.079 6.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.113 4.113 4 C -0.167 4.167 5 C -0.119 4.119 6 C -0.151 4.151 7 C 0.326 3.674 8 O -0.449 6.449 9 N -0.084 5.084 10 C -0.486 4.486 11 H 0.113 0.887 12 C -0.155 4.155 13 N -0.475 5.475 14 Si 0.739 3.261 15 H -0.189 1.189 16 H -0.203 1.203 17 H -0.204 1.204 18 C 0.091 3.909 19 C -0.109 4.109 20 C -0.144 4.144 21 C -0.193 4.193 22 C -0.141 4.141 23 C -0.211 4.211 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.142 0.858 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.610 0.221 -5.617 6.681 hybrid contribution 1.255 -0.047 -0.287 1.288 sum -2.355 0.175 -5.904 6.359 Atomic orbital electron populations 1.21692 0.95323 1.01128 1.01805 1.20585 0.95570 0.93775 1.02953 1.21724 1.00251 0.95676 0.93651 1.20766 1.01549 0.99722 0.94636 1.20969 1.01864 0.96310 0.92734 1.20532 1.00488 0.91492 1.02628 1.18779 0.82839 0.79303 0.86442 1.90321 1.37577 1.67180 1.49864 1.40955 1.17770 1.30405 1.19262 1.19368 0.83260 1.53774 0.92171 0.88682 1.25622 0.99402 0.94715 0.95792 1.69987 1.23898 1.42111 1.11548 0.86068 0.81168 0.78226 0.80635 1.18885 1.20338 1.20394 1.18173 0.94065 0.90433 0.88224 1.20752 0.98088 0.94229 0.97815 1.20700 0.98371 1.00055 0.95298 1.20736 0.97975 1.00863 0.99740 1.20814 0.98889 0.96982 0.97465 1.22679 1.01352 1.03154 0.93919 0.92283 0.93176 0.93001 0.91715 0.90555 0.91299 0.92445 0.91781 0.92138 0.91391 0.91854 0.91677 0.85752 0.88003 0.88393 0.87946 0.81255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.89 37.16 0.37 -1.80 16 2 C -0.09 -1.57 5.49 -27.89 -0.15 -1.72 16 3 C -0.11 -1.95 4.61 -101.12 -0.47 -2.41 16 4 C -0.11 -1.49 9.60 36.01 0.35 -1.14 16 5 C -0.12 -2.32 4.61 -102.89 -0.47 -2.80 16 6 C -0.09 -1.63 8.63 36.00 0.31 -1.32 16 7 C 0.53 12.78 5.33 -12.75 -0.07 12.71 16 8 O -0.56 -14.42 13.50 5.23 0.07 -14.35 16 9 N -0.38 -9.45 2.20 -60.29 -0.13 -9.58 16 10 C -0.36 -8.76 7.14 -15.02 -0.11 -8.87 16 11 H 0.10 2.25 6.84 -52.48 -0.36 1.89 16 12 C 0.05 1.31 4.13 -17.47 -0.07 1.24 16 13 N -0.84 -22.01 10.84 55.50 0.60 -21.41 16 14 Si 0.91 18.85 29.56 -169.99 -5.02 13.82 16 15 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 16 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 18 C 0.19 4.79 5.71 -83.72 -0.48 4.31 16 19 C -0.09 -2.14 7.53 -39.36 -0.30 -2.44 16 20 C -0.13 -2.71 10.04 -39.61 -0.40 -3.11 16 21 C -0.17 -3.58 10.04 -39.53 -0.40 -3.98 16 22 C -0.12 -2.66 10.04 -39.62 -0.40 -3.05 16 23 C -0.19 -4.70 9.04 -39.37 -0.36 -5.06 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 1.56 5.98 -51.93 -0.31 1.25 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.79 6.40 -51.93 -0.33 0.46 16 32 H 0.06 1.13 7.99 -51.93 -0.41 0.72 16 33 H 0.07 1.06 7.74 -51.93 -0.40 0.66 16 34 H 0.06 0.93 7.86 -51.93 -0.41 0.52 16 35 H 0.27 6.78 8.32 -40.82 -0.34 6.44 16 36 H 0.12 3.12 5.86 -52.48 -0.31 2.81 16 37 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 38 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.17 4.34 4.55 -56.15 -0.26 4.08 16 LS Contribution 323.83 15.07 4.88 4.88 Total: -1.00 -28.19 323.83 -7.97 -36.16 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -5.73 Total: 9.92 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -2.64 Total: -19.44 kcal Atomic # 7 Polarization: -31.46 SS G_CDS: 0.47 Total: -30.99 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.07 Total: -14.35 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.19 -7.97 -36.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779881140.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.511 kcal (2) G-P(sol) polarization free energy of solvation -28.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds