Wall clock time and date at job start Mon Mar 30 2020 01:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47419 * 2 1 4 4 C 1.50706 * 119.99863 * 274.35530 * 3 2 1 5 5 C 1.33156 * 119.99944 * 94.35445 * 3 2 1 6 6 C 1.50696 * 119.99940 * 185.47833 * 5 3 2 7 7 C 1.46901 * 119.99951 * 5.47674 * 5 3 2 8 8 O 1.21656 * 119.99598 * 256.04850 * 7 5 3 9 9 N 1.34776 * 120.00098 * 76.04980 * 7 5 3 10 10 C 1.36871 * 120.00079 * 3.83908 * 9 7 5 11 11 H 1.08005 * 119.99700 * 306.55087 * 10 9 7 12 12 C 1.38990 * 119.99677 * 126.54491 * 10 9 7 13 13 N 1.31366 * 120.00436 * 3.35424 * 12 10 9 14 14 Si 1.86811 * 119.99946 * 183.35467 * 12 10 9 15 15 H 1.48497 * 109.46873 * 0.02562 * 14 12 10 16 16 H 1.48493 * 109.47055 * 120.00040 * 14 12 10 17 17 H 1.48497 * 109.47200 * 240.00260 * 14 12 10 18 18 C 1.39694 * 119.99523 * 183.84121 * 9 7 5 19 19 C 1.38990 * 120.07400 * 172.10730 * 18 9 7 20 20 C 1.38078 * 119.91595 * 180.29873 * 19 18 9 21 21 C 1.38308 * 120.07925 * 359.95063 * 20 19 18 22 22 C 1.38303 * 120.16511 * 0.04775 * 21 20 19 23 23 C 1.38075 * 120.07965 * 359.97438 * 22 21 20 24 24 H 1.08999 * 109.47232 * 299.99842 * 1 2 3 25 25 H 1.09002 * 109.47217 * 60.00175 * 1 2 3 26 26 H 1.09006 * 109.47183 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47485 * 239.99706 * 2 1 3 28 28 H 1.08998 * 109.46959 * 120.00271 * 2 1 3 29 29 H 1.09000 * 109.46801 * 274.72299 * 4 3 2 30 30 H 1.08994 * 109.47107 * 34.72497 * 4 3 2 31 31 H 1.09000 * 109.46502 * 154.72508 * 4 3 2 32 32 H 1.08992 * 109.47366 * 184.96265 * 6 5 3 33 33 H 1.09002 * 109.47281 * 304.96099 * 6 5 3 34 34 H 1.09004 * 109.47384 * 64.95669 * 6 5 3 35 35 H 0.97005 * 120.00337 * 185.00338 * 13 12 10 36 36 H 1.08004 * 120.04284 * 0.24851 * 19 18 9 37 37 H 1.08004 * 119.95631 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.91541 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.96177 * 179.97438 * 22 21 20 40 40 H 1.08009 * 120.03954 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1901 2.1642 -1.3014 5 6 2.3369 2.0193 1.1498 6 6 2.7206 3.4765 1.1623 7 6 2.2987 1.2590 2.4062 8 8 1.3722 1.4094 3.1802 9 7 3.2900 0.3949 2.7015 10 6 4.3710 0.2833 1.8694 11 1 4.2246 0.0874 0.8174 12 6 5.6569 0.4223 2.3782 13 7 5.8379 0.5950 3.6679 14 14 7.1279 0.3635 1.2283 15 1 6.6584 0.1615 -0.1660 16 1 7.8772 1.6424 1.3173 17 1 8.0173 -0.7595 1.6192 18 6 3.2141 -0.3867 3.8567 19 6 4.1477 -1.3919 4.0802 20 6 4.0659 -2.1666 5.2202 21 6 3.0572 -1.9428 6.1396 22 6 2.1264 -0.9435 5.9206 23 6 2.2016 -0.1650 4.7827 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.1635 1.9349 -1.7351 30 1 1.4038 1.8591 -1.9917 31 1 2.1172 3.2363 -1.1184 32 1 3.0183 3.7653 2.1702 33 1 3.5527 3.6390 0.4772 34 1 1.8685 4.0794 0.8483 35 1 6.7280 0.7645 4.0143 36 1 4.9356 -1.5672 3.3627 37 1 4.7908 -2.9481 5.3943 38 1 2.9959 -2.5501 7.0306 39 1 1.3399 -0.7718 6.6405 40 1 1.4742 0.6149 4.6121 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779881140.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:21 Heat of formation + Delta-G solvation = -0.107530 kcal Electronic energy + Delta-G solvation = -21935.864620 eV Core-core repulsion = 18908.697667 eV Total energy + Delta-G solvation = -3027.166953 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.63883 -39.18751 -37.39431 -36.75398 -33.73492 -33.11232 -31.35636 -30.70776 -29.49046 -27.29644 -26.80287 -24.15952 -23.39642 -22.90587 -21.69773 -19.96362 -18.44217 -17.49358 -17.29950 -16.90940 -16.36185 -16.28036 -15.46614 -15.08072 -14.88318 -14.71545 -14.58259 -14.07186 -13.97249 -13.76075 -13.57852 -13.36940 -13.26371 -13.10352 -13.02580 -12.92547 -12.70465 -12.59038 -12.43897 -12.06147 -11.76767 -11.72738 -11.61987 -11.03198 -10.57923 -9.99812 -9.50945 -9.35171 -8.68398 -8.10842 -6.34078 0.68701 0.85277 1.06532 1.40444 1.43905 1.56432 2.01150 2.30298 2.92276 2.98480 3.41197 3.88252 4.02279 4.15896 4.33030 4.38974 4.43057 4.50861 4.59857 4.60319 4.66852 4.81841 4.91324 4.95168 4.97491 5.02336 5.03181 5.06975 5.16280 5.22246 5.23836 5.32486 5.41200 5.45608 5.69314 5.82318 5.90526 5.91217 5.99511 6.10600 6.30444 6.65996 7.02386 7.45110 7.84038 8.69604 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.009616 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.396393 B = 2911.090191 C = 4161.263809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.090 4.090 4 C -0.109 4.109 5 C -0.161 4.161 6 C -0.086 4.086 7 C 0.524 3.476 8 O -0.596 6.596 9 N -0.389 5.389 10 C -0.361 4.361 11 H 0.099 0.901 12 C 0.014 3.986 13 N -0.880 5.880 14 Si 0.979 3.021 15 H -0.250 1.250 16 H -0.278 1.278 17 H -0.279 1.279 18 C 0.159 3.841 19 C -0.107 4.107 20 C -0.125 4.125 21 C -0.166 4.166 22 C -0.122 4.122 23 C -0.221 4.221 24 H 0.030 0.970 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.031 0.969 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.271 0.729 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.132 0.868 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 -0.349 -7.773 8.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.135 4.135 3 C -0.091 4.091 4 C -0.165 4.165 5 C -0.163 4.163 6 C -0.142 4.142 7 C 0.318 3.682 8 O -0.483 6.483 9 N -0.095 5.095 10 C -0.488 4.488 11 H 0.116 0.884 12 C -0.191 4.191 13 N -0.513 5.513 14 Si 0.802 3.198 15 H -0.173 1.173 16 H -0.204 1.204 17 H -0.205 1.205 18 C 0.063 3.937 19 C -0.128 4.128 20 C -0.144 4.144 21 C -0.185 4.185 22 C -0.141 4.141 23 C -0.241 4.241 24 H 0.049 0.951 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.158 0.842 39 H 0.149 0.851 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.388 -0.260 -7.326 8.075 hybrid contribution 1.100 0.004 0.280 1.135 sum -2.288 -0.257 -7.046 7.412 Atomic orbital electron populations 1.21625 0.93758 1.01980 1.01803 1.20659 0.96950 0.93807 1.02034 1.22171 0.96765 0.95547 0.94613 1.20868 1.03029 1.00083 0.92499 1.21037 1.05972 0.97519 0.91804 1.20518 1.02081 0.90201 1.01445 1.19498 0.82006 0.79077 0.87627 1.90282 1.38485 1.68150 1.51365 1.41196 1.18248 1.30752 1.19322 1.19565 0.83494 1.53467 0.92263 0.88351 1.26395 1.01725 0.94015 0.96972 1.70129 1.24212 1.43574 1.13398 0.85074 0.77550 0.77859 0.79317 1.17336 1.20354 1.20485 1.18538 0.94881 0.91323 0.88993 1.20755 0.97908 0.95174 0.98955 1.21088 0.99083 0.99922 0.94312 1.21151 0.96524 1.00303 1.00550 1.21174 0.99778 0.96385 0.96766 1.22707 1.01600 1.04220 0.95560 0.95083 0.90199 0.91850 0.89356 0.94624 0.90117 0.89927 0.90364 0.94978 0.89624 0.89335 0.91944 0.87312 0.85110 0.84200 0.85052 0.82961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 9.89 71.98 0.71 -3.25 16 2 C -0.10 -3.27 5.49 29.85 0.16 -3.11 16 3 C -0.09 -3.01 4.61 -17.59 -0.08 -3.09 16 4 C -0.11 -2.54 9.60 71.24 0.68 -1.85 16 5 C -0.16 -6.51 4.61 -18.74 -0.09 -6.60 16 6 C -0.09 -2.94 8.63 71.23 0.61 -2.32 16 7 C 0.52 26.35 5.33 86.51 0.46 26.81 16 8 O -0.60 -32.47 13.50 -4.21 -0.06 -32.52 16 9 N -0.39 -20.38 2.20 -462.88 -1.02 -21.40 16 10 C -0.36 -18.11 7.14 84.09 0.60 -17.51 16 11 H 0.10 4.71 6.84 -2.91 -0.02 4.69 16 12 C 0.01 0.71 4.13 84.94 0.35 1.06 16 13 N -0.88 -47.29 10.84 21.67 0.23 -47.06 16 14 Si 0.98 38.64 29.56 68.60 2.03 40.67 16 15 H -0.25 -9.16 7.11 99.48 0.71 -8.46 16 16 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 17 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 18 C 0.16 8.49 5.71 38.25 0.22 8.71 16 19 C -0.11 -5.34 7.53 22.41 0.17 -5.17 16 20 C -0.13 -5.33 10.04 22.25 0.22 -5.10 16 21 C -0.17 -6.54 10.04 22.30 0.22 -6.32 16 22 C -0.12 -5.26 10.04 22.25 0.22 -5.04 16 23 C -0.22 -11.33 9.04 22.41 0.20 -11.12 16 24 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 26 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.03 1.50 5.98 -2.39 -0.01 1.48 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.64 6.40 -2.39 -0.02 1.63 16 32 H 0.03 1.23 7.99 -2.39 -0.02 1.22 16 33 H 0.09 2.55 7.74 -2.39 -0.02 2.53 16 34 H 0.09 2.49 7.86 -2.38 -0.02 2.47 16 35 H 0.27 13.85 8.32 -92.70 -0.77 13.07 16 36 H 0.11 5.66 5.86 -2.91 -0.02 5.64 16 37 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 38 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 39 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 40 H 0.15 8.33 4.55 -61.04 -0.28 8.06 16 Total: -1.00 -64.92 323.83 6.63 -58.29 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: 0.76 Total: 35.93 kcal Atomic # 6 Polarization: -38.59 SS G_CDS: 4.68 Total: -33.91 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: -0.78 Total: -68.46 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.06 Total: -32.52 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -64.92 6.63 -58.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779881140.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.187 kcal (2) G-P(sol) polarization free energy of solvation -64.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds