Wall clock time and date at job start Mon Mar 30 2020 01:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50695 * 109.47105 * 2 1 4 4 C 1.34816 * 119.99780 * 85.42773 * 3 2 1 5 5 C 1.46422 * 120.00347 * 353.35435 * 4 3 2 6 6 O 1.21702 * 119.99660 * 353.47186 * 5 4 3 7 7 N 1.34775 * 120.00421 * 173.47255 * 5 4 3 8 8 C 1.46494 * 120.00301 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47257 * 179.97438 * 8 7 5 10 10 H 1.07992 * 119.99621 * 359.97438 * 9 8 7 11 11 C 1.37868 * 120.00035 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00018 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 120.00091 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47430 * 90.00178 * 13 11 9 15 15 H 1.48500 * 109.47409 * 210.00305 * 13 11 9 16 16 H 1.48496 * 109.47300 * 330.00237 * 13 11 9 17 17 C 1.47207 * 120.00506 * 265.42460 * 3 2 1 18 18 C 1.39840 * 120.16549 * 64.71722 * 17 3 2 19 19 C 1.37893 * 119.82564 * 179.76828 * 18 17 3 20 20 C 1.38400 * 120.16612 * 0.54102 * 19 18 17 21 21 C 1.50705 * 119.82571 * 179.71569 * 20 19 18 22 22 C 1.38398 * 120.35114 * 359.69392 * 20 19 18 23 23 C 1.37898 * 120.16715 * 0.04407 * 22 20 19 24 24 H 1.08998 * 109.46979 * 300.00225 * 1 2 3 25 25 H 1.09005 * 109.46716 * 60.00074 * 1 2 3 26 26 H 1.09003 * 109.46990 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46716 * 119.99926 * 2 1 3 28 28 H 1.08998 * 109.46979 * 239.99775 * 2 1 3 29 29 H 1.08004 * 119.99737 * 173.36239 * 4 3 2 30 30 H 0.97007 * 119.99690 * 359.97438 * 7 5 4 31 31 H 1.09002 * 109.47223 * 299.99800 * 8 7 5 32 32 H 1.09000 * 109.47214 * 59.99397 * 8 7 5 33 33 H 0.97011 * 119.99935 * 179.97438 * 12 11 9 34 34 H 1.08001 * 120.08790 * 0.02562 * 18 17 3 35 35 H 1.08000 * 119.91408 * 180.23386 * 19 18 17 36 36 H 1.09001 * 109.47045 * 269.97866 * 21 20 19 37 37 H 1.08998 * 109.47187 * 29.97467 * 21 20 19 38 38 H 1.09000 * 109.47093 * 149.97302 * 21 20 19 39 39 H 1.07998 * 119.91754 * 180.02562 * 22 20 19 40 40 H 1.08000 * 120.08427 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1693 2.0873 1.1638 5 6 1.6948 1.4864 2.4119 6 8 1.0716 0.4414 2.3857 7 7 1.9482 2.0904 3.5898 8 6 1.4740 1.4889 4.8385 9 6 1.8860 2.3545 6.0013 10 1 2.4455 3.2617 5.8275 11 6 1.5495 1.9877 7.2870 12 7 1.9095 2.7428 8.3018 13 14 0.5824 0.4181 7.5877 14 1 1.5236 -0.7149 7.7762 15 1 -0.2520 0.5764 8.8059 16 1 -0.2934 0.1449 6.4200 17 6 2.3736 2.0809 -1.2707 18 6 1.3795 2.3308 -2.2219 19 6 1.7061 2.9540 -3.4078 20 6 3.0158 3.3217 -3.6626 21 6 3.3653 3.9965 -4.9640 22 6 4.0062 3.0734 -2.7283 23 6 3.6944 2.4559 -1.5354 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 2.6288 3.0646 1.1756 30 1 2.4453 2.9232 3.6107 31 1 0.3873 1.4074 4.8129 32 1 1.9101 0.4964 4.9523 33 1 1.6724 2.4849 9.2064 34 1 0.3578 2.0403 -2.0264 35 1 0.9388 3.1511 -4.1419 36 1 3.6241 3.2417 -5.7066 37 1 2.5099 4.5734 -5.3153 38 1 4.2147 4.6624 -4.8113 39 1 5.0259 3.3636 -2.9341 40 1 4.4684 2.2624 -0.8074 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787620765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:39 Heat of formation + Delta-G solvation = -12.001306 kcal Electronic energy + Delta-G solvation = -19934.169687 eV Core-core repulsion = 16906.486981 eV Total energy + Delta-G solvation = -3027.682706 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.82312 -38.93080 -35.75427 -34.16971 -32.43231 -32.19258 -31.20456 -30.24502 -28.14134 -26.80137 -24.04493 -22.77584 -22.35102 -21.68832 -20.27944 -18.95014 -17.05489 -16.49077 -15.88969 -15.49343 -15.31053 -14.88113 -14.48629 -14.37171 -14.13728 -13.89390 -13.62365 -13.22258 -12.94537 -12.78996 -12.51611 -12.40176 -12.17463 -12.14503 -11.89120 -11.63135 -11.21971 -11.01151 -10.87516 -10.79152 -10.46660 -9.95708 -9.48577 -9.21284 -9.12456 -8.99151 -8.76184 -8.50319 -8.02245 -6.20647 -4.22761 0.92880 1.25012 1.64831 3.27033 3.33844 3.42025 3.53653 3.81641 4.07001 4.34030 4.62058 4.65204 4.74788 4.85033 5.02068 5.10918 5.14752 5.25038 5.30504 5.43682 5.48940 5.53866 5.59440 5.72201 5.79614 5.87864 5.89309 6.09355 6.16343 6.32038 6.36047 6.39814 6.52159 6.63011 6.71754 6.81593 6.88482 7.08814 7.28266 7.41700 8.16483 8.55145 8.76851 8.97748 9.39669 10.91398 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.033119 B = 0.003365 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.236863 B = 8318.668507 C = 8907.669982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 C -0.009 4.009 4 C -0.195 4.195 5 C 0.528 3.472 6 O -0.550 6.550 7 N -0.700 5.700 8 C 0.221 3.779 9 C -0.543 4.543 10 H 0.079 0.921 11 C 0.077 3.923 12 N -0.893 5.893 13 Si 0.878 3.122 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.260 1.260 17 C -0.056 4.056 18 C -0.098 4.098 19 C -0.121 4.121 20 C -0.090 4.090 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.102 4.102 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.051 0.949 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.124 0.876 30 H 0.396 0.604 31 H 0.025 0.975 32 H 0.021 0.979 33 H 0.267 0.733 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.123 0.877 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.099 0.507 -24.758 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.122 4.122 3 C -0.011 4.011 4 C -0.216 4.216 5 C 0.316 3.684 6 O -0.432 6.432 7 N -0.348 5.348 8 C 0.099 3.901 9 C -0.581 4.581 10 H 0.097 0.903 11 C -0.127 4.127 12 N -0.530 5.530 13 Si 0.704 3.296 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.185 1.185 17 C -0.056 4.056 18 C -0.116 4.116 19 C -0.138 4.138 20 C -0.090 4.090 21 C -0.171 4.171 22 C -0.138 4.138 23 C -0.120 4.120 24 H 0.093 0.907 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.118 0.882 28 H 0.073 0.927 29 H 0.142 0.858 30 H 0.230 0.770 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.141 0.859 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.645 -0.198 -24.507 24.563 hybrid contribution -0.115 -0.187 0.427 0.480 sum 1.531 -0.385 -24.081 24.132 Atomic orbital electron populations 1.21651 0.94270 1.01568 1.01644 1.20766 0.97092 0.91575 1.02805 1.21018 0.93659 0.95638 0.90821 1.22916 1.04860 1.01373 0.92488 1.18290 0.80966 0.84926 0.84217 1.90713 1.41735 1.23333 1.87466 1.46125 1.55526 1.26519 1.06595 1.19479 0.95133 0.94340 0.81185 1.21108 1.37586 1.09749 0.89686 0.90286 1.24802 0.95163 0.96989 0.95722 1.69887 1.45880 1.38103 0.99174 0.86805 0.80816 0.83579 0.78409 1.19876 1.20939 1.18479 1.18972 0.93678 0.99009 0.93982 1.21286 0.99095 0.98289 0.92953 1.20945 0.95891 0.99777 0.97236 1.20013 0.93538 0.98962 0.96454 1.20800 1.02140 0.99933 0.94229 1.20953 0.99021 0.99998 0.93838 1.21356 0.95447 0.97958 0.97211 0.90703 0.94289 0.92979 0.88179 0.92715 0.85822 0.76995 0.95670 0.96139 0.92282 0.85619 0.85974 0.91235 0.91581 0.91556 0.85946 0.85618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.34 37.16 0.35 -1.54 16 2 C -0.09 -1.22 5.32 -27.88 -0.15 -1.37 16 3 C -0.01 -0.13 4.73 -102.20 -0.48 -0.61 16 4 C -0.20 -2.95 9.63 -37.50 -0.36 -3.31 16 5 C 0.53 10.12 7.59 -12.97 -0.10 10.02 16 6 O -0.55 -11.78 11.15 5.19 0.06 -11.72 16 7 N -0.70 -14.43 5.54 -62.89 -0.35 -14.78 16 8 C 0.22 5.46 4.50 -5.19 -0.02 5.43 16 9 C -0.54 -15.03 9.83 -34.44 -0.34 -15.36 16 10 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 11 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 12 N -0.89 -26.69 13.96 55.43 0.77 -25.91 16 13 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 17 C -0.06 -0.68 5.29 -105.06 -0.56 -1.24 16 18 C -0.10 -1.08 9.78 -39.11 -0.38 -1.46 16 19 C -0.12 -1.15 9.68 -39.65 -0.38 -1.53 16 20 C -0.09 -0.82 5.89 -104.50 -0.62 -1.43 16 21 C -0.11 -0.73 10.00 36.01 0.36 -0.37 16 22 C -0.12 -1.14 9.68 -39.65 -0.38 -1.52 16 23 C -0.10 -1.11 9.73 -39.11 -0.38 -1.49 16 24 H 0.07 1.26 6.24 -51.93 -0.32 0.93 16 25 H 0.04 0.46 6.77 -51.93 -0.35 0.11 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.10 1.67 6.07 -51.93 -0.32 1.36 16 28 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 30 H 0.40 7.30 8.30 -40.82 -0.34 6.96 16 31 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 32 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.13 1.29 6.68 -52.49 -0.35 0.94 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 38 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 333.07 15.07 5.02 5.02 Total: -1.00 -31.18 333.07 -8.53 -39.72 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.82 Total: 4.51 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -3.55 Total: -13.70 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.42 Total: -40.69 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.06 Total: -11.72 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.18 -8.53 -39.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787620765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.717 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds