Wall clock time and date at job start Mon Mar 30 2020 01:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50695 * 109.47105 * 2 1 4 4 C 1.34816 * 119.99780 * 85.42773 * 3 2 1 5 5 C 1.46422 * 120.00347 * 353.35435 * 4 3 2 6 6 O 1.21702 * 119.99660 * 353.47186 * 5 4 3 7 7 N 1.34775 * 120.00421 * 173.47255 * 5 4 3 8 8 C 1.46494 * 120.00301 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47257 * 179.97438 * 8 7 5 10 10 H 1.07992 * 119.99621 * 359.97438 * 9 8 7 11 11 C 1.37868 * 120.00035 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00018 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 120.00091 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47430 * 90.00178 * 13 11 9 15 15 H 1.48500 * 109.47409 * 210.00305 * 13 11 9 16 16 H 1.48496 * 109.47300 * 330.00237 * 13 11 9 17 17 C 1.47207 * 120.00506 * 265.42460 * 3 2 1 18 18 C 1.39840 * 120.16549 * 64.71722 * 17 3 2 19 19 C 1.37893 * 119.82564 * 179.76828 * 18 17 3 20 20 C 1.38400 * 120.16612 * 0.54102 * 19 18 17 21 21 C 1.50705 * 119.82571 * 179.71569 * 20 19 18 22 22 C 1.38398 * 120.35114 * 359.69392 * 20 19 18 23 23 C 1.37898 * 120.16715 * 0.04407 * 22 20 19 24 24 H 1.08998 * 109.46979 * 300.00225 * 1 2 3 25 25 H 1.09005 * 109.46716 * 60.00074 * 1 2 3 26 26 H 1.09003 * 109.46990 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46716 * 119.99926 * 2 1 3 28 28 H 1.08998 * 109.46979 * 239.99775 * 2 1 3 29 29 H 1.08004 * 119.99737 * 173.36239 * 4 3 2 30 30 H 0.97007 * 119.99690 * 359.97438 * 7 5 4 31 31 H 1.09002 * 109.47223 * 299.99800 * 8 7 5 32 32 H 1.09000 * 109.47214 * 59.99397 * 8 7 5 33 33 H 0.97011 * 119.99935 * 179.97438 * 12 11 9 34 34 H 1.08001 * 120.08790 * 0.02562 * 18 17 3 35 35 H 1.08000 * 119.91408 * 180.23386 * 19 18 17 36 36 H 1.09001 * 109.47045 * 269.97866 * 21 20 19 37 37 H 1.08998 * 109.47187 * 29.97467 * 21 20 19 38 38 H 1.09000 * 109.47093 * 149.97302 * 21 20 19 39 39 H 1.07998 * 119.91754 * 180.02562 * 22 20 19 40 40 H 1.08000 * 120.08427 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1693 2.0873 1.1638 5 6 1.6948 1.4864 2.4119 6 8 1.0716 0.4414 2.3857 7 7 1.9482 2.0904 3.5898 8 6 1.4740 1.4889 4.8385 9 6 1.8860 2.3545 6.0013 10 1 2.4455 3.2617 5.8275 11 6 1.5495 1.9877 7.2870 12 7 1.9095 2.7428 8.3018 13 14 0.5824 0.4181 7.5877 14 1 1.5236 -0.7149 7.7762 15 1 -0.2520 0.5764 8.8059 16 1 -0.2934 0.1449 6.4200 17 6 2.3736 2.0809 -1.2707 18 6 1.3795 2.3308 -2.2219 19 6 1.7061 2.9540 -3.4078 20 6 3.0158 3.3217 -3.6626 21 6 3.3653 3.9965 -4.9640 22 6 4.0062 3.0734 -2.7283 23 6 3.6944 2.4559 -1.5354 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 2.6288 3.0646 1.1756 30 1 2.4453 2.9232 3.6107 31 1 0.3873 1.4074 4.8129 32 1 1.9101 0.4964 4.9523 33 1 1.6724 2.4849 9.2064 34 1 0.3578 2.0403 -2.0264 35 1 0.9388 3.1511 -4.1419 36 1 3.6241 3.2417 -5.7066 37 1 2.5099 4.5734 -5.3153 38 1 4.2147 4.6624 -4.8113 39 1 5.0259 3.3636 -2.9341 40 1 4.4684 2.2624 -0.8074 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787620765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:38 Heat of formation + Delta-G solvation = -29.967306 kcal Electronic energy + Delta-G solvation = -19934.948751 eV Core-core repulsion = 16906.486981 eV Total energy + Delta-G solvation = -3028.461770 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.98526 -40.07956 -36.99530 -35.85358 -34.42452 -33.08940 -32.02416 -31.46104 -29.83036 -27.77914 -25.29807 -24.03711 -23.49455 -22.79491 -21.71159 -20.25521 -18.88809 -17.78450 -17.33905 -16.58670 -16.34398 -16.06912 -15.98248 -15.92987 -15.37514 -14.89242 -14.54816 -14.44805 -14.36023 -14.11839 -13.92717 -13.65853 -13.35545 -13.03781 -13.00557 -12.78619 -12.71749 -12.44539 -12.02226 -11.93748 -11.84056 -11.67490 -11.66506 -10.92009 -10.53749 -10.33407 -9.87351 -9.79564 -9.30367 -8.40808 -6.47976 -0.00876 0.49819 0.57884 1.32444 1.34174 1.47224 2.27481 2.34235 2.53664 2.80573 2.94730 3.62758 3.86477 3.97536 4.06975 4.10544 4.23537 4.34992 4.48085 4.52803 4.59033 4.65835 4.76450 4.85575 4.87504 4.91494 5.01085 5.03628 5.14637 5.17285 5.24546 5.27839 5.30930 5.35332 5.45737 5.60445 5.62327 5.65593 5.70092 6.07947 6.10026 6.53082 6.88220 7.15157 7.43730 8.74157 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.033119 B = 0.003365 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.236863 B = 8318.668507 C = 8907.669982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 C 0.019 3.981 4 C -0.214 4.214 5 C 0.527 3.473 6 O -0.575 6.575 7 N -0.705 5.705 8 C 0.235 3.765 9 C -0.548 4.548 10 H 0.056 0.944 11 C 0.025 3.975 12 N -0.932 5.932 13 Si 0.940 3.060 14 H -0.265 1.265 15 H -0.273 1.273 16 H -0.259 1.259 17 C -0.080 4.080 18 C -0.105 4.105 19 C -0.125 4.125 20 C -0.088 4.088 21 C -0.114 4.114 22 C -0.125 4.125 23 C -0.109 4.109 24 H 0.044 0.956 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.145 0.855 30 H 0.406 0.594 31 H 0.013 0.987 32 H 0.012 0.988 33 H 0.272 0.728 34 H 0.129 0.871 35 H 0.144 0.856 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.143 0.857 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.127 0.384 -27.542 27.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.125 4.125 3 C 0.017 3.983 4 C -0.235 4.235 5 C 0.318 3.682 6 O -0.459 6.459 7 N -0.354 5.354 8 C 0.111 3.889 9 C -0.586 4.586 10 H 0.075 0.925 11 C -0.175 4.175 12 N -0.571 5.571 13 Si 0.764 3.236 14 H -0.189 1.189 15 H -0.198 1.198 16 H -0.184 1.184 17 C -0.080 4.080 18 C -0.123 4.123 19 C -0.143 4.143 20 C -0.088 4.088 21 C -0.171 4.171 22 C -0.143 4.143 23 C -0.126 4.126 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.162 0.838 30 H 0.241 0.759 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.147 0.853 35 H 0.162 0.838 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.161 0.839 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.687 -0.306 -27.315 27.369 hybrid contribution -0.076 -0.109 1.123 1.130 sum 1.611 -0.414 -26.193 26.246 Atomic orbital electron populations 1.21577 0.93988 1.01895 1.01195 1.20758 0.97321 0.91982 1.02431 1.21176 0.90713 0.95022 0.91412 1.22731 1.07322 1.02585 0.90825 1.18872 0.80131 0.84413 0.84798 1.90707 1.42775 1.24516 1.87887 1.45980 1.56322 1.27168 1.05930 1.19063 0.94224 0.93525 0.82079 1.21311 1.37006 1.09350 0.90930 0.92543 1.25630 0.96165 1.00184 0.95541 1.69991 1.47319 1.40005 0.99810 0.85816 0.79596 0.79730 0.78500 1.18942 1.19791 1.18359 1.18901 0.94749 1.00894 0.93494 1.21399 0.99019 0.98626 0.93297 1.21235 0.96823 0.99148 0.97070 1.20412 0.93257 0.97843 0.97301 1.20866 1.02983 1.00281 0.92932 1.21241 1.00313 0.99456 0.93310 1.21479 0.95036 0.98081 0.98053 0.93732 0.91993 0.92347 0.90848 0.90675 0.83777 0.75898 0.96906 0.96988 0.91833 0.85318 0.83806 0.90159 0.90590 0.90636 0.83896 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.34 71.98 0.67 -2.88 16 2 C -0.09 -2.45 5.32 29.85 0.16 -2.30 16 3 C 0.02 0.51 4.73 -18.29 -0.09 0.42 16 4 C -0.21 -6.40 9.63 23.62 0.23 -6.17 16 5 C 0.53 20.50 7.59 86.37 0.66 21.15 16 6 O -0.58 -25.15 11.15 -4.35 -0.05 -25.19 16 7 N -0.71 -29.61 5.54 -471.09 -2.61 -32.23 16 8 C 0.23 11.80 4.50 85.64 0.38 12.19 16 9 C -0.55 -30.99 9.83 25.60 0.25 -30.74 16 10 H 0.06 3.37 7.84 -2.91 -0.02 3.34 16 11 C 0.02 1.43 5.47 84.65 0.46 1.90 16 12 N -0.93 -56.53 13.96 21.44 0.30 -56.24 16 13 Si 0.94 44.69 27.47 68.60 1.88 46.57 16 14 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 16 H -0.26 -12.20 6.54 99.48 0.65 -11.55 16 17 C -0.08 -1.80 5.29 -20.15 -0.11 -1.91 16 18 C -0.11 -2.09 9.78 22.58 0.22 -1.86 16 19 C -0.13 -2.01 9.68 22.23 0.22 -1.80 16 20 C -0.09 -1.32 5.89 -19.79 -0.12 -1.44 16 21 C -0.11 -1.04 10.00 71.24 0.71 -0.33 16 22 C -0.13 -2.04 9.68 22.23 0.22 -1.82 16 23 C -0.11 -2.15 9.73 22.57 0.22 -1.93 16 24 H 0.04 1.50 6.24 -2.39 -0.01 1.49 16 25 H 0.06 1.38 6.77 -2.38 -0.02 1.37 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 2.48 6.07 -2.38 -0.01 2.47 16 28 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 29 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.41 15.27 8.30 -92.70 -0.77 14.50 16 31 H 0.01 0.68 7.20 -2.39 -0.02 0.67 16 32 H 0.01 0.63 7.57 -2.39 -0.02 0.61 16 33 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 34 H 0.13 2.37 6.68 -2.91 -0.02 2.35 16 35 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 36 H 0.08 0.60 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 38 H 0.07 0.57 8.08 -2.39 -0.02 0.56 16 39 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 40 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -67.58 333.07 3.82 -63.76 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.21 Total: 20.86 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 4.09 Total: -17.53 kcal Atomic # 7 Polarization: -86.15 SS G_CDS: -2.31 Total: -88.46 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.19 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -67.58 3.82 -63.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787620765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.790 kcal (2) G-P(sol) polarization free energy of solvation -67.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds