Wall clock time and date at job start Mon Mar 30 2020 01:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50706 * 109.47026 * 2 1 4 4 C 1.34800 * 120.00066 * 94.99539 * 3 2 1 5 5 C 1.46436 * 119.99993 * 179.97438 * 4 3 2 6 6 O 1.21691 * 119.99635 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00006 * 179.72523 * 5 4 3 8 8 C 1.46506 * 119.99969 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.46952 * 180.02562 * 8 7 5 10 10 H 1.07994 * 119.99978 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99699 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99745 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00108 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47139 * 89.99646 * 13 11 9 15 15 H 1.48497 * 109.47167 * 210.00217 * 13 11 9 16 16 H 1.48504 * 109.46776 * 329.99516 * 13 11 9 17 17 C 1.47207 * 119.99711 * 275.00229 * 3 2 1 18 18 C 1.39836 * 120.16989 * 64.72224 * 17 3 2 19 19 C 1.37900 * 119.82077 * 179.69818 * 18 17 3 20 20 C 1.38403 * 120.17155 * 0.60296 * 19 18 17 21 21 C 1.50701 * 119.82465 * 179.69621 * 20 19 18 22 22 C 1.38404 * 120.34409 * 359.67092 * 20 19 18 23 23 C 1.37888 * 120.16947 * 0.02562 * 22 20 19 24 24 H 1.08993 * 109.47243 * 60.00143 * 1 2 3 25 25 H 1.09001 * 109.46434 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46987 * 300.00024 * 1 2 3 27 27 H 1.08994 * 109.47176 * 239.99692 * 2 1 3 28 28 H 1.09001 * 109.47129 * 119.99585 * 2 1 3 29 29 H 1.08000 * 120.00631 * 0.02562 * 4 3 2 30 30 H 0.97004 * 120.00023 * 0.02562 * 7 5 4 31 31 H 1.08995 * 109.47073 * 300.00728 * 8 7 5 32 32 H 1.09006 * 109.46718 * 60.00131 * 8 7 5 33 33 H 0.97005 * 119.99568 * 180.02562 * 12 11 9 34 34 H 1.08000 * 120.09275 * 0.02562 * 18 17 3 35 35 H 1.07998 * 119.91287 * 180.27187 * 19 18 17 36 36 H 1.09006 * 109.46950 * 269.97324 * 21 20 19 37 37 H 1.08997 * 109.47320 * 29.97791 * 21 20 19 38 38 H 1.09006 * 109.46712 * 149.97895 * 21 20 19 39 39 H 1.07994 * 119.91138 * 179.97438 * 22 20 19 40 40 H 1.08000 * 120.08418 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3529 2.0225 1.1630 5 6 2.8415 3.4029 1.1629 6 8 2.9578 4.0071 0.1130 7 7 3.1567 4.0062 2.3261 8 6 3.6450 5.3875 2.3261 9 6 3.9233 5.8219 3.7420 10 1 3.7530 5.1378 4.5600 11 6 4.3943 7.0932 3.9931 12 7 4.6011 7.9265 2.9968 13 14 4.7399 7.6316 5.7481 14 1 6.1471 7.3098 6.0965 15 1 4.5224 9.0955 5.8687 16 1 3.8248 6.9172 6.6742 17 6 2.1729 2.1518 -1.2700 18 6 1.0430 2.4497 -2.0381 19 6 1.1823 3.1403 -3.2236 20 6 2.4375 3.5273 -3.6599 21 6 2.5813 4.2756 -4.9600 22 6 3.5611 3.2311 -2.9080 23 6 3.4376 2.5467 -1.7174 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.2501 1.4862 2.0947 30 1 3.0602 3.5259 3.1633 31 1 4.5624 5.4485 1.7406 32 1 2.8899 6.0398 1.8872 33 1 4.9329 8.8208 3.1734 34 1 0.0633 2.1445 -1.7012 35 1 0.3102 3.3750 -3.8158 36 1 2.7168 3.5648 -5.7753 37 1 1.6840 4.8678 -5.1396 38 1 3.4473 4.9354 -4.9056 39 1 4.5372 3.5361 -3.2552 40 1 4.3152 2.3167 -1.1316 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787620769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:42 Heat of formation + Delta-G solvation = -12.945708 kcal Electronic energy + Delta-G solvation = -20385.307597 eV Core-core repulsion = 17357.583939 eV Total energy + Delta-G solvation = -3027.723658 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.61576 -38.22212 -35.79111 -34.06983 -32.34494 -31.99106 -30.73145 -30.16412 -27.54763 -26.31124 -24.34213 -22.51650 -22.27083 -21.43026 -20.05330 -18.73475 -17.32194 -15.91229 -15.57526 -15.12169 -14.95553 -14.66210 -14.40652 -14.04017 -13.94610 -13.72756 -13.48864 -13.10429 -13.00779 -12.59368 -12.25982 -12.06311 -11.95783 -11.76343 -11.67117 -11.48041 -11.23097 -10.94894 -10.87521 -10.70908 -10.54984 -10.28071 -9.37444 -9.27081 -8.92625 -8.71139 -8.45608 -7.76107 -7.73202 -6.14518 -4.21211 1.29294 1.84029 1.97061 3.25184 3.31196 3.33772 4.03673 4.09330 4.20819 4.41924 4.72878 4.99015 5.05836 5.13496 5.20089 5.21533 5.23391 5.33255 5.54792 5.60676 5.65043 5.69192 5.72856 5.78911 5.82637 5.95738 6.01739 6.11642 6.27281 6.40634 6.46198 6.58199 6.81768 6.91588 6.95915 7.36486 7.38452 7.51477 7.56201 7.71930 8.00338 8.70230 8.82990 9.19948 9.45885 10.95704 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018483 B = 0.004415 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.529275 B = 6341.194526 C = 7526.045099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.018 4.018 4 C -0.194 4.194 5 C 0.519 3.481 6 O -0.540 6.540 7 N -0.708 5.708 8 C 0.251 3.749 9 C -0.543 4.543 10 H 0.062 0.938 11 C 0.064 3.936 12 N -0.886 5.886 13 Si 0.903 3.097 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.041 4.041 18 C -0.107 4.107 19 C -0.131 4.131 20 C -0.088 4.088 21 C -0.111 4.111 22 C -0.124 4.124 23 C -0.040 4.040 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.125 0.875 30 H 0.389 0.611 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.265 0.735 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.115 0.885 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.361 -15.177 -9.721 19.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.124 4.124 3 C -0.020 4.020 4 C -0.215 4.215 5 C 0.306 3.694 6 O -0.421 6.421 7 N -0.356 5.356 8 C 0.131 3.869 9 C -0.581 4.581 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.523 5.523 13 Si 0.730 3.270 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.041 4.041 18 C -0.125 4.125 19 C -0.149 4.149 20 C -0.088 4.088 21 C -0.168 4.168 22 C -0.142 4.142 23 C -0.059 4.059 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.143 0.857 30 H 0.221 0.779 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.133 0.867 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.197 -14.493 -10.484 18.931 hybrid contribution 0.211 0.350 1.632 1.682 sum -5.986 -14.143 -8.852 17.726 Atomic orbital electron populations 1.21806 0.94454 1.01789 1.02609 1.20637 0.96422 0.92253 1.03056 1.20995 0.94101 0.94716 0.92224 1.23088 1.04445 0.96102 0.97843 1.18384 0.79394 0.86827 0.84765 1.90851 1.54452 1.66247 1.30509 1.46428 1.64591 1.17222 1.07316 1.19062 0.94802 0.75859 0.97213 1.21244 1.45860 0.98970 0.92042 0.91962 1.24950 0.95096 0.96254 0.97701 1.69985 1.44369 1.06951 1.31016 0.86426 0.78675 0.77891 0.83989 1.20468 1.21007 1.19755 1.18570 0.93689 0.98739 0.93115 1.21046 0.97252 0.99537 0.94645 1.20721 0.96450 1.00661 0.97064 1.19853 0.93360 0.98815 0.96770 1.20759 1.02471 0.99231 0.94332 1.20774 0.97858 1.00141 0.95447 1.20918 0.96107 0.94769 0.94073 0.92162 0.92277 0.92287 0.90649 0.90639 0.85699 0.77869 0.95620 0.95612 0.92499 0.86638 0.86791 0.91735 0.91911 0.91722 0.86669 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.84 37.16 0.37 -0.98 16 2 C -0.09 -0.88 6.08 -27.88 -0.17 -1.05 16 3 C -0.02 -0.26 4.75 -102.20 -0.49 -0.74 16 4 C -0.19 -3.00 9.66 -37.50 -0.36 -3.37 16 5 C 0.52 10.73 7.62 -12.96 -0.10 10.63 16 6 O -0.54 -12.88 12.19 5.20 0.06 -12.82 16 7 N -0.71 -15.42 5.54 -62.88 -0.35 -15.77 16 8 C 0.25 6.82 5.43 -5.19 -0.03 6.79 16 9 C -0.54 -15.00 9.28 -34.44 -0.32 -15.32 16 10 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 11 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 12 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 13 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 C -0.04 -0.66 3.85 -105.06 -0.40 -1.06 16 18 C -0.11 -1.59 9.51 -39.11 -0.37 -1.96 16 19 C -0.13 -1.88 9.68 -39.64 -0.38 -2.27 16 20 C -0.09 -1.29 5.89 -104.50 -0.62 -1.91 16 21 C -0.11 -1.27 10.00 36.01 0.36 -0.91 16 22 C -0.12 -1.98 9.68 -39.65 -0.38 -2.37 16 23 C -0.04 -0.69 6.95 -39.11 -0.27 -0.96 16 24 H 0.06 0.56 6.01 -51.93 -0.31 0.25 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.66 8.03 -51.93 -0.42 0.24 16 29 H 0.13 1.54 8.04 -52.49 -0.42 1.12 16 30 H 0.39 7.31 8.30 -40.82 -0.34 6.97 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.12 1.48 6.20 -52.49 -0.33 1.16 16 35 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 38 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 39 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.11 1.91 8.05 -52.49 -0.42 1.49 16 LS Contribution 337.22 15.07 5.08 5.08 Total: -1.00 -32.65 337.22 -8.75 -41.40 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.99 Total: 5.56 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -3.27 Total: -13.79 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.39 Total: -41.51 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.06 Total: -12.82 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.65 -8.75 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787620769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.454 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds