Wall clock time and date at job start Mon Mar 30 2020 01:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50706 * 109.47026 * 2 1 4 4 C 1.34800 * 120.00066 * 94.99539 * 3 2 1 5 5 C 1.46436 * 119.99993 * 179.97438 * 4 3 2 6 6 O 1.21691 * 119.99635 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00006 * 179.72523 * 5 4 3 8 8 C 1.46506 * 119.99969 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.46952 * 180.02562 * 8 7 5 10 10 H 1.07994 * 119.99978 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99699 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99745 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00108 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47139 * 89.99646 * 13 11 9 15 15 H 1.48497 * 109.47167 * 210.00217 * 13 11 9 16 16 H 1.48504 * 109.46776 * 329.99516 * 13 11 9 17 17 C 1.47207 * 119.99711 * 275.00229 * 3 2 1 18 18 C 1.39836 * 120.16989 * 64.72224 * 17 3 2 19 19 C 1.37900 * 119.82077 * 179.69818 * 18 17 3 20 20 C 1.38403 * 120.17155 * 0.60296 * 19 18 17 21 21 C 1.50701 * 119.82465 * 179.69621 * 20 19 18 22 22 C 1.38404 * 120.34409 * 359.67092 * 20 19 18 23 23 C 1.37888 * 120.16947 * 0.02562 * 22 20 19 24 24 H 1.08993 * 109.47243 * 60.00143 * 1 2 3 25 25 H 1.09001 * 109.46434 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46987 * 300.00024 * 1 2 3 27 27 H 1.08994 * 109.47176 * 239.99692 * 2 1 3 28 28 H 1.09001 * 109.47129 * 119.99585 * 2 1 3 29 29 H 1.08000 * 120.00631 * 0.02562 * 4 3 2 30 30 H 0.97004 * 120.00023 * 0.02562 * 7 5 4 31 31 H 1.08995 * 109.47073 * 300.00728 * 8 7 5 32 32 H 1.09006 * 109.46718 * 60.00131 * 8 7 5 33 33 H 0.97005 * 119.99568 * 180.02562 * 12 11 9 34 34 H 1.08000 * 120.09275 * 0.02562 * 18 17 3 35 35 H 1.07998 * 119.91287 * 180.27187 * 19 18 17 36 36 H 1.09006 * 109.46950 * 269.97324 * 21 20 19 37 37 H 1.08997 * 109.47320 * 29.97791 * 21 20 19 38 38 H 1.09006 * 109.46712 * 149.97895 * 21 20 19 39 39 H 1.07994 * 119.91138 * 179.97438 * 22 20 19 40 40 H 1.08000 * 120.08418 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3529 2.0225 1.1630 5 6 2.8415 3.4029 1.1629 6 8 2.9578 4.0071 0.1130 7 7 3.1567 4.0062 2.3261 8 6 3.6450 5.3875 2.3261 9 6 3.9233 5.8219 3.7420 10 1 3.7530 5.1378 4.5600 11 6 4.3943 7.0932 3.9931 12 7 4.6011 7.9265 2.9968 13 14 4.7399 7.6316 5.7481 14 1 6.1471 7.3098 6.0965 15 1 4.5224 9.0955 5.8687 16 1 3.8248 6.9172 6.6742 17 6 2.1729 2.1518 -1.2700 18 6 1.0430 2.4497 -2.0381 19 6 1.1823 3.1403 -3.2236 20 6 2.4375 3.5273 -3.6599 21 6 2.5813 4.2756 -4.9600 22 6 3.5611 3.2311 -2.9080 23 6 3.4376 2.5467 -1.7174 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.2501 1.4862 2.0947 30 1 3.0602 3.5259 3.1633 31 1 4.5624 5.4485 1.7406 32 1 2.8899 6.0398 1.8872 33 1 4.9329 8.8208 3.1734 34 1 0.0633 2.1445 -1.7012 35 1 0.3102 3.3750 -3.8158 36 1 2.7168 3.5648 -5.7753 37 1 1.6840 4.8678 -5.1396 38 1 3.4473 4.9354 -4.9056 39 1 4.5372 3.5361 -3.2552 40 1 4.3152 2.3167 -1.1316 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787620769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:41 Heat of formation + Delta-G solvation = -32.615255 kcal Electronic energy + Delta-G solvation = -20386.160532 eV Core-core repulsion = 17357.583939 eV Total energy + Delta-G solvation = -3028.576594 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.99281 -39.67567 -36.94254 -35.98311 -34.33758 -33.05751 -31.90795 -31.34271 -29.38142 -27.59166 -25.61927 -24.23646 -23.47330 -22.55245 -21.67792 -20.07430 -18.96278 -17.74513 -17.13714 -16.59022 -16.31623 -16.12322 -15.78413 -15.52118 -15.08328 -14.98691 -14.52252 -14.37138 -14.27517 -14.00647 -13.87602 -13.58524 -13.27917 -13.01011 -12.92629 -12.72541 -12.67786 -12.50023 -12.23049 -12.09267 -11.84643 -11.51582 -11.48926 -10.80921 -10.76423 -10.23618 -9.81360 -9.56821 -8.99124 -8.30503 -6.47447 0.06119 0.62017 0.76798 1.41298 1.44140 1.55394 2.32903 2.46761 2.70262 2.91957 3.04325 3.67500 3.89640 3.99700 4.09719 4.14635 4.34068 4.35193 4.47013 4.55504 4.59724 4.74968 4.83019 4.84099 4.95143 5.00686 5.07817 5.11185 5.21641 5.23424 5.24403 5.36272 5.41038 5.47129 5.52008 5.64536 5.70305 5.76669 5.78401 5.84994 6.21777 6.64147 6.99215 7.22542 7.56967 8.81816 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018483 B = 0.004415 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.529275 B = 6341.194526 C = 7526.045099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C 0.007 3.993 4 C -0.213 4.213 5 C 0.514 3.486 6 O -0.580 6.580 7 N -0.707 5.707 8 C 0.272 3.728 9 C -0.557 4.557 10 H 0.083 0.917 11 C 0.004 3.996 12 N -0.932 5.932 13 Si 0.986 3.014 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.255 1.255 17 C -0.063 4.063 18 C -0.114 4.114 19 C -0.138 4.138 20 C -0.097 4.097 21 C -0.109 4.109 22 C -0.146 4.146 23 C -0.065 4.065 24 H 0.054 0.946 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.163 0.837 30 H 0.405 0.595 31 H -0.016 1.016 32 H -0.017 1.017 33 H 0.269 0.731 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.120 0.880 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.776 -17.052 -8.708 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C 0.005 3.995 4 C -0.234 4.234 5 C 0.304 3.696 6 O -0.462 6.462 7 N -0.356 5.356 8 C 0.149 3.851 9 C -0.595 4.595 10 H 0.101 0.899 11 C -0.196 4.196 12 N -0.570 5.570 13 Si 0.808 3.192 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.179 1.179 17 C -0.063 4.063 18 C -0.132 4.132 19 C -0.156 4.156 20 C -0.097 4.097 21 C -0.165 4.165 22 C -0.164 4.164 23 C -0.083 4.083 24 H 0.073 0.927 25 H 0.101 0.899 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.180 0.820 30 H 0.241 0.759 31 H 0.002 0.998 32 H 0.001 0.999 33 H 0.077 0.923 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.138 0.862 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.627 -16.423 -9.461 20.430 hybrid contribution 0.630 0.907 1.132 1.582 sum -6.997 -15.516 -8.329 18.949 Atomic orbital electron populations 1.21807 0.93126 1.03280 1.02267 1.20759 0.97315 0.89282 1.04653 1.21459 0.91024 0.96272 0.90769 1.22953 1.06904 0.93335 1.00168 1.19276 0.78129 0.88687 0.83539 1.90836 1.55837 1.67797 1.31766 1.46162 1.65199 1.15386 1.08874 1.18445 0.91729 0.78276 0.96654 1.21632 1.45792 0.99719 0.92351 0.89933 1.26085 0.94416 0.96208 1.02870 1.70153 1.45315 1.07528 1.34034 0.85146 0.79013 0.77317 0.77683 1.19514 1.20859 1.17888 1.18900 0.93672 0.99458 0.94318 1.21383 0.97790 0.99262 0.94717 1.21141 0.97286 0.99952 0.97206 1.20274 0.93105 0.98529 0.97835 1.20803 1.02965 0.99487 0.93270 1.21020 0.98940 1.00620 0.95799 1.20967 0.96379 0.96160 0.94779 0.92651 0.89896 0.92515 0.89741 0.88391 0.81957 0.75923 0.99787 0.99923 0.92268 0.84501 0.84019 0.89547 0.90707 0.91984 0.86230 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.84 71.98 0.71 -1.45 16 2 C -0.08 -1.43 6.08 29.85 0.18 -1.25 16 3 C 0.01 0.19 4.75 -18.29 -0.09 0.10 16 4 C -0.21 -6.40 9.66 23.62 0.23 -6.17 16 5 C 0.51 21.85 7.62 86.38 0.66 22.50 16 6 O -0.58 -29.17 12.19 -4.32 -0.05 -29.23 16 7 N -0.71 -31.68 5.54 -471.07 -2.61 -34.29 16 8 C 0.27 15.55 5.43 85.63 0.46 16.01 16 9 C -0.56 -31.26 9.28 25.60 0.24 -31.02 16 10 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 11 C 0.00 0.21 5.46 84.65 0.46 0.67 16 12 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 13 Si 0.99 43.11 29.54 68.60 2.03 45.14 16 14 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 15 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 17 C -0.06 -2.03 3.85 -20.15 -0.08 -2.11 16 18 C -0.11 -3.29 9.51 22.58 0.21 -3.07 16 19 C -0.14 -3.83 9.68 22.23 0.22 -3.61 16 20 C -0.10 -2.85 5.89 -19.79 -0.12 -2.97 16 21 C -0.11 -2.38 10.00 71.24 0.71 -1.66 16 22 C -0.15 -4.87 9.68 22.23 0.22 -4.65 16 23 C -0.06 -2.30 6.95 22.57 0.16 -2.14 16 24 H 0.05 0.86 6.01 -2.39 -0.01 0.85 16 25 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.10 1.31 8.03 -2.39 -0.02 1.30 16 29 H 0.16 3.56 8.04 -2.91 -0.02 3.54 16 30 H 0.41 15.15 8.30 -92.71 -0.77 14.38 16 31 H -0.02 -1.02 8.14 -2.39 -0.02 -1.03 16 32 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 33 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 34 H 0.14 3.25 6.20 -2.91 -0.02 3.23 16 35 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 36 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.07 1.45 8.08 -2.39 -0.02 1.43 16 38 H 0.06 1.38 8.08 -2.38 -0.02 1.36 16 39 H 0.12 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.10 3.58 8.05 -2.91 -0.02 3.56 16 Total: -1.00 -74.86 337.22 4.08 -70.78 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.26 Total: 25.64 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 4.17 Total: -20.83 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -2.33 Total: -91.50 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.05 Total: -29.23 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -74.86 4.08 -70.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787620769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.167 kcal (2) G-P(sol) polarization free energy of solvation -74.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds