Wall clock time and date at job start Mon Mar 30 2020 01:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.50696 * 120.00007 * 2 1 4 4 C 1.31001 * 119.99805 * 180.02562 * 2 1 3 5 5 C 1.50696 * 120.00187 * 359.97438 * 4 2 1 6 6 N 1.46507 * 109.47121 * 125.00076 * 5 4 2 7 7 C 1.34773 * 120.00266 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99503 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.50707 * 109.47262 * 179.97438 * 9 7 6 11 11 C 1.37643 * 120.12639 * 265.30991 * 10 9 7 12 12 C 1.38615 * 120.24281 * 180.31829 * 11 10 9 13 13 C 1.38658 * 120.50051 * 359.66907 * 12 11 10 14 14 C 1.37593 * 120.25264 * 0.02562 * 13 12 11 15 15 C 1.40688 * 120.12508 * 84.99750 * 10 9 7 16 16 C 1.41401 * 120.24844 * 359.97438 * 15 10 9 17 17 H 1.07999 * 119.99289 * 334.28466 * 16 15 10 18 18 C 1.39937 * 120.00394 * 154.28925 * 16 15 10 19 19 N 1.30829 * 120.00181 * 334.60180 * 18 16 15 20 20 Si 1.86801 * 120.00083 * 154.60226 * 18 16 15 21 21 H 1.48505 * 109.47160 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47100 * 300.00105 * 20 18 16 23 23 H 1.48502 * 109.47051 * 60.00179 * 20 18 16 24 24 H 1.08997 * 109.46891 * 239.99578 * 1 2 3 25 25 H 1.08998 * 109.46870 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47006 * 119.99552 * 1 2 3 27 27 H 1.08998 * 109.47306 * 269.99935 * 3 2 1 28 28 H 1.09003 * 109.47011 * 29.99880 * 3 2 1 29 29 H 1.09003 * 109.47237 * 149.99867 * 3 2 1 30 30 H 1.07996 * 119.99569 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47130 * 5.00537 * 5 4 2 32 32 H 1.08991 * 109.47325 * 245.00381 * 5 4 2 33 33 H 0.97000 * 119.99705 * 0.02562 * 6 5 4 34 34 H 1.09001 * 109.46892 * 59.99768 * 9 7 6 35 35 H 1.08991 * 109.47294 * 299.99778 * 9 7 6 36 36 H 1.07998 * 119.87840 * 0.02562 * 11 10 9 37 37 H 1.07996 * 119.74749 * 179.68975 * 12 11 10 38 38 H 1.08000 * 119.87393 * 180.02562 * 13 12 11 39 39 H 1.07996 * 120.12941 * 180.02562 * 14 13 12 40 40 H 0.96998 * 119.99709 * 354.17607 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4086 -2.4396 -0.0005 6 7 1.8501 -3.2584 -1.1323 7 6 1.3095 -4.4763 -1.3345 8 8 0.4578 -4.8946 -0.5791 9 6 1.7641 -5.3187 -2.4983 10 6 1.0105 -6.6239 -2.4985 11 6 1.5551 -7.7361 -1.8977 12 6 0.8670 -8.9394 -1.9021 13 6 -0.3783 -9.0358 -2.5043 14 6 -0.9447 -7.9353 -3.1054 15 6 -0.2552 -6.7083 -3.1069 16 6 -0.8277 -5.5705 -3.7209 17 1 -0.5434 -4.5808 -3.3953 18 6 -1.7627 -5.7269 -4.7503 19 7 -1.7567 -6.8126 -5.4801 20 14 -3.0194 -4.3852 -5.0824 21 1 -3.8884 -4.7906 -6.2163 22 1 -3.8517 -4.1756 -3.8706 23 1 -2.3167 -3.1226 -5.4247 24 1 -0.3633 -0.5139 0.8899 25 1 -0.3633 1.0277 0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 2.4423 1.6197 -1.0276 28 1 1.6714 2.0647 0.5138 29 1 3.2130 1.1747 0.5139 30 1 3.2420 -1.1345 -0.0009 31 1 0.3403 -2.2423 -0.0897 32 1 1.6033 -2.9716 0.9306 33 1 2.5315 -2.9239 -1.7362 34 1 2.8322 -5.5163 -2.4085 35 1 1.5701 -4.7867 -3.4296 36 1 2.5241 -7.6722 -1.4252 37 1 1.3040 -9.8083 -1.4328 38 1 -0.9057 -9.9782 -2.5014 39 1 -1.9149 -8.0125 -3.5734 40 1 -1.0536 -7.4707 -5.3646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791011348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:08 Heat of formation + Delta-G solvation = -26.303484 kcal Electronic energy + Delta-G solvation = -20428.490586 eV Core-core repulsion = 17400.187691 eV Total energy + Delta-G solvation = -3028.302895 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.26882 -37.65393 -36.80320 -33.82095 -33.75412 -31.77006 -29.20484 -29.08087 -27.91445 -26.65958 -24.90091 -23.66128 -20.88995 -20.59199 -19.57929 -18.12755 -17.63245 -16.27104 -15.88980 -15.35856 -14.89619 -14.63238 -14.17219 -14.06601 -13.96302 -13.70974 -13.52960 -12.93442 -12.61454 -12.36060 -12.24450 -12.05153 -11.96401 -11.78063 -11.65228 -11.18019 -11.09304 -10.94902 -10.79827 -10.42606 -10.35648 -9.59957 -9.35777 -9.32982 -8.92086 -8.90380 -8.57312 -7.50161 -7.45312 -7.07434 -4.36894 1.89221 2.81760 2.90330 3.18044 3.32073 3.37550 3.40338 3.85490 4.05975 4.62211 4.64245 4.74702 5.11987 5.33005 5.36311 5.37566 5.48840 5.61138 5.66648 5.70787 5.82618 5.86634 5.93293 6.01862 6.16061 6.22756 6.38445 6.41505 6.47502 6.64453 6.74154 6.88466 7.05458 7.26447 7.47512 7.73149 7.87988 7.91511 7.98733 8.02451 8.26428 8.40285 8.84288 8.90142 8.98018 10.11942 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.005400 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.187919 B = 5183.878442 C = 6636.304274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 C -0.118 4.118 4 C -0.184 4.184 5 C 0.147 3.853 6 N -0.741 5.741 7 C 0.513 3.487 8 O -0.523 6.523 9 C -0.070 4.070 10 C -0.184 4.184 11 C -0.069 4.069 12 C -0.253 4.253 13 C -0.087 4.087 14 C -0.216 4.216 15 C 0.116 3.884 16 C -0.517 4.517 17 H 0.072 0.928 18 C 0.041 3.959 19 N -0.800 5.800 20 Si 1.059 2.941 21 H -0.274 1.274 22 H -0.275 1.275 23 H -0.277 1.277 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.396 0.604 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.041 12.701 5.547 15.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.113 4.113 3 C -0.174 4.174 4 C -0.203 4.203 5 C 0.023 3.977 6 N -0.396 5.396 7 C 0.301 3.699 8 O -0.397 6.397 9 C -0.110 4.110 10 C -0.185 4.185 11 C -0.088 4.088 12 C -0.273 4.273 13 C -0.105 4.105 14 C -0.236 4.236 15 C 0.114 3.886 16 C -0.545 4.545 17 H 0.090 0.910 18 C -0.181 4.181 19 N -0.423 5.423 20 Si 0.883 3.117 21 H -0.199 1.199 22 H -0.201 1.201 23 H -0.203 1.203 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.131 0.869 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.229 0.771 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.077 12.712 5.129 14.618 hybrid contribution 1.748 -0.267 0.817 1.948 sum 6.825 12.445 5.946 15.389 Atomic orbital electron populations 1.20938 0.92104 1.02361 1.02828 1.21713 0.96078 0.94946 0.98590 1.20874 0.99605 0.94788 1.02179 1.22705 0.99604 0.93434 1.04534 1.20288 0.98561 0.88643 0.90162 1.46132 1.44387 1.18254 1.30813 1.21217 0.81287 0.80664 0.86762 1.90678 1.30745 1.71390 1.46848 1.20246 0.98932 0.95165 0.96626 1.19022 0.96280 0.92566 1.10665 1.20359 0.97573 0.93284 0.97563 1.20258 0.98421 0.96937 1.11633 1.20600 0.95278 0.96910 0.97736 1.21137 1.00346 0.94051 1.08017 1.17391 0.89280 0.92399 0.89574 1.20440 1.22328 0.94418 1.17321 0.90998 1.26913 0.98459 1.00353 0.92381 1.70449 1.31833 1.08185 1.31832 0.83724 0.76006 0.74535 0.77393 1.19878 1.20052 1.20253 0.91184 0.92050 0.90864 0.91257 0.91813 0.91877 0.86929 0.90985 0.91467 0.77101 0.90667 0.88682 0.89624 0.89476 0.89406 0.87767 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 8.53 36.01 0.31 -0.96 16 2 C -0.11 -1.11 6.05 -101.06 -0.61 -1.73 16 3 C -0.12 -0.90 9.97 36.00 0.36 -0.54 16 4 C -0.18 -1.98 9.22 -36.03 -0.33 -2.31 16 5 C 0.15 2.05 5.91 -5.19 -0.03 2.02 16 6 N -0.74 -11.31 5.55 -61.48 -0.34 -11.66 16 7 C 0.51 10.35 7.46 -10.99 -0.08 10.27 16 8 O -0.52 -12.98 16.03 5.56 0.09 -12.89 16 9 C -0.07 -1.40 5.18 -29.03 -0.15 -1.55 16 10 C -0.18 -4.50 4.43 -103.91 -0.46 -4.96 16 11 C -0.07 -1.63 9.66 -39.66 -0.38 -2.01 16 12 C -0.25 -5.95 10.05 -39.29 -0.39 -6.35 16 13 C -0.09 -2.13 10.02 -39.66 -0.40 -2.52 16 14 C -0.22 -5.80 7.95 -38.87 -0.31 -6.10 16 15 C 0.12 3.14 5.30 -106.82 -0.57 2.58 16 16 C -0.52 -13.84 8.08 -37.74 -0.30 -14.14 16 17 H 0.07 1.90 6.73 -52.49 -0.35 1.54 16 18 C 0.04 1.04 4.94 -17.34 -0.09 0.96 16 19 N -0.80 -21.43 12.31 55.55 0.68 -20.74 16 20 Si 1.06 22.23 30.00 -169.99 -5.10 17.13 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 24 H 0.07 0.71 7.85 -51.93 -0.41 0.30 16 25 H 0.06 0.52 7.94 -51.93 -0.41 0.10 16 26 H 0.07 0.83 7.66 -51.93 -0.40 0.44 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.43 8.05 -51.93 -0.42 0.01 16 29 H 0.06 0.43 8.06 -51.93 -0.42 0.02 16 30 H 0.11 1.05 8.04 -52.49 -0.42 0.63 16 31 H 0.07 1.10 5.79 -51.93 -0.30 0.80 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 4.81 8.46 -40.82 -0.35 4.47 16 34 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 35 H 0.10 1.89 7.06 -51.93 -0.37 1.52 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.10 2.86 6.49 -52.49 -0.34 2.52 16 40 H 0.30 8.21 6.68 -40.82 -0.27 7.94 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -31.26 335.30 -8.84 -40.10 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -5.78 Total: 10.35 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: -3.44 Total: -27.35 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.34 Total: -32.40 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.10 Total: 17.13 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.26 -8.84 -40.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791011348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.800 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds