Wall clock time and date at job start Mon Mar 30 2020 01:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.50696 * 120.00007 * 2 1 4 4 C 1.31001 * 119.99805 * 180.02562 * 2 1 3 5 5 C 1.50696 * 120.00187 * 359.97438 * 4 2 1 6 6 N 1.46507 * 109.47121 * 125.00076 * 5 4 2 7 7 C 1.34773 * 120.00266 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99503 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.50707 * 109.47262 * 179.97438 * 9 7 6 11 11 C 1.37643 * 120.12639 * 265.30991 * 10 9 7 12 12 C 1.38615 * 120.24281 * 180.31829 * 11 10 9 13 13 C 1.38658 * 120.50051 * 359.66907 * 12 11 10 14 14 C 1.37593 * 120.25264 * 0.02562 * 13 12 11 15 15 C 1.40688 * 120.12508 * 84.99750 * 10 9 7 16 16 C 1.41401 * 120.24844 * 359.97438 * 15 10 9 17 17 H 1.07999 * 119.99289 * 334.28466 * 16 15 10 18 18 C 1.39937 * 120.00394 * 154.28925 * 16 15 10 19 19 N 1.30829 * 120.00181 * 334.60180 * 18 16 15 20 20 Si 1.86801 * 120.00083 * 154.60226 * 18 16 15 21 21 H 1.48505 * 109.47160 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47100 * 300.00105 * 20 18 16 23 23 H 1.48502 * 109.47051 * 60.00179 * 20 18 16 24 24 H 1.08997 * 109.46891 * 239.99578 * 1 2 3 25 25 H 1.08998 * 109.46870 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47006 * 119.99552 * 1 2 3 27 27 H 1.08998 * 109.47306 * 269.99935 * 3 2 1 28 28 H 1.09003 * 109.47011 * 29.99880 * 3 2 1 29 29 H 1.09003 * 109.47237 * 149.99867 * 3 2 1 30 30 H 1.07996 * 119.99569 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47130 * 5.00537 * 5 4 2 32 32 H 1.08991 * 109.47325 * 245.00381 * 5 4 2 33 33 H 0.97000 * 119.99705 * 0.02562 * 6 5 4 34 34 H 1.09001 * 109.46892 * 59.99768 * 9 7 6 35 35 H 1.08991 * 109.47294 * 299.99778 * 9 7 6 36 36 H 1.07998 * 119.87840 * 0.02562 * 11 10 9 37 37 H 1.07996 * 119.74749 * 179.68975 * 12 11 10 38 38 H 1.08000 * 119.87393 * 180.02562 * 13 12 11 39 39 H 1.07996 * 120.12941 * 180.02562 * 14 13 12 40 40 H 0.96998 * 119.99709 * 354.17607 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4086 -2.4396 -0.0005 6 7 1.8501 -3.2584 -1.1323 7 6 1.3095 -4.4763 -1.3345 8 8 0.4578 -4.8946 -0.5791 9 6 1.7641 -5.3187 -2.4983 10 6 1.0105 -6.6239 -2.4985 11 6 1.5551 -7.7361 -1.8977 12 6 0.8670 -8.9394 -1.9021 13 6 -0.3783 -9.0358 -2.5043 14 6 -0.9447 -7.9353 -3.1054 15 6 -0.2552 -6.7083 -3.1069 16 6 -0.8277 -5.5705 -3.7209 17 1 -0.5434 -4.5808 -3.3953 18 6 -1.7627 -5.7269 -4.7503 19 7 -1.7567 -6.8126 -5.4801 20 14 -3.0194 -4.3852 -5.0824 21 1 -3.8884 -4.7906 -6.2163 22 1 -3.8517 -4.1756 -3.8706 23 1 -2.3167 -3.1226 -5.4247 24 1 -0.3633 -0.5139 0.8899 25 1 -0.3633 1.0277 0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 2.4423 1.6197 -1.0276 28 1 1.6714 2.0647 0.5138 29 1 3.2130 1.1747 0.5139 30 1 3.2420 -1.1345 -0.0009 31 1 0.3403 -2.2423 -0.0897 32 1 1.6033 -2.9716 0.9306 33 1 2.5315 -2.9239 -1.7362 34 1 2.8322 -5.5163 -2.4085 35 1 1.5701 -4.7867 -3.4296 36 1 2.5241 -7.6722 -1.4252 37 1 1.3040 -9.8083 -1.4328 38 1 -0.9057 -9.9782 -2.5014 39 1 -1.9149 -8.0125 -3.5734 40 1 -1.0536 -7.4707 -5.3646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791011348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:07 Heat of formation + Delta-G solvation = -44.214012 kcal Electronic energy + Delta-G solvation = -20429.267244 eV Core-core repulsion = 17400.187691 eV Total energy + Delta-G solvation = -3029.079553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.86173 -39.38826 -37.87402 -35.73658 -35.08793 -33.53227 -31.10559 -30.25479 -28.71430 -28.20863 -26.78972 -24.76669 -22.82491 -22.26978 -21.21557 -19.66173 -18.98430 -17.66595 -17.26730 -16.77708 -16.65046 -16.14620 -15.87595 -15.46317 -15.12049 -14.98729 -14.81130 -14.34118 -14.16305 -13.86226 -13.56424 -13.53054 -13.28066 -12.98772 -12.77746 -12.73044 -12.60166 -12.46781 -12.24332 -11.98774 -11.83252 -11.48396 -11.21660 -10.91263 -10.83102 -10.12748 -9.69601 -9.44015 -9.42033 -9.05307 -6.39364 0.88777 0.98976 1.08196 1.46153 1.61691 1.75758 1.79599 2.30956 2.50935 2.73152 3.60079 3.78228 4.00546 4.07738 4.27865 4.29554 4.38675 4.40717 4.50172 4.58010 4.65432 4.68182 4.72737 4.81621 4.91789 4.95667 4.99953 5.08218 5.09625 5.18584 5.33013 5.49241 5.50458 5.67028 5.80354 5.84528 5.92584 5.99249 6.05536 6.29930 6.45789 6.66987 6.87351 7.02392 7.41222 8.08734 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.005400 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.187919 B = 5183.878442 C = 6636.304274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.104 4.104 3 C -0.116 4.116 4 C -0.193 4.193 5 C 0.146 3.854 6 N -0.720 5.720 7 C 0.514 3.486 8 O -0.578 6.578 9 C -0.069 4.069 10 C -0.190 4.190 11 C -0.081 4.081 12 C -0.251 4.251 13 C -0.097 4.097 14 C -0.246 4.246 15 C 0.086 3.914 16 C -0.542 4.542 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.819 5.819 20 Si 1.106 2.894 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.252 1.252 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.134 0.866 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.414 0.586 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.866 14.545 6.133 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.105 4.105 3 C -0.173 4.173 4 C -0.211 4.211 5 C 0.023 3.977 6 N -0.373 5.373 7 C 0.302 3.698 8 O -0.457 6.457 9 C -0.108 4.108 10 C -0.192 4.192 11 C -0.099 4.099 12 C -0.270 4.270 13 C -0.116 4.116 14 C -0.265 4.265 15 C 0.083 3.917 16 C -0.570 4.570 17 H 0.085 0.915 18 C -0.211 4.211 19 N -0.443 5.443 20 Si 0.924 3.076 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.176 1.176 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.151 0.849 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.250 0.750 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.102 0.898 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.963 14.590 5.702 17.142 hybrid contribution 1.273 -0.879 0.743 1.716 sum 8.236 13.711 6.446 17.244 Atomic orbital electron populations 1.20980 0.92699 1.03262 1.01784 1.21988 0.95953 0.95951 0.96622 1.20917 0.99918 0.93423 1.03030 1.22587 1.00311 0.91754 1.06431 1.20322 0.98245 0.90010 0.89073 1.45927 1.43598 1.16709 1.31092 1.21162 0.80702 0.81819 0.86105 1.90658 1.33306 1.72941 1.48798 1.20273 1.00595 0.93349 0.96626 1.19529 0.95660 0.94906 1.09096 1.20816 0.99014 0.92890 0.97202 1.20718 0.97731 0.98235 1.10275 1.20903 0.96103 0.97179 0.97378 1.21152 1.00174 0.95437 1.09753 1.17782 0.90683 0.92635 0.90600 1.20542 1.24013 0.94212 1.18266 0.91459 1.28209 0.99653 1.01558 0.91682 1.70552 1.31831 1.08889 1.33023 0.83157 0.74133 0.73052 0.77296 1.19281 1.20095 1.17632 0.91690 0.90181 0.92550 0.90394 0.90750 0.90764 0.84861 0.92668 0.92395 0.74968 0.86765 0.88700 0.86264 0.86283 0.87229 0.89849 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.53 71.24 0.61 -1.87 16 2 C -0.10 -1.83 6.05 -16.49 -0.10 -1.93 16 3 C -0.12 -1.39 9.97 71.23 0.71 -0.68 16 4 C -0.19 -3.72 9.22 25.64 0.24 -3.48 16 5 C 0.15 3.99 5.91 85.63 0.51 4.49 16 6 N -0.72 -20.99 5.55 -466.80 -2.59 -23.58 16 7 C 0.51 20.45 7.46 87.66 0.65 21.10 16 8 O -0.58 -29.15 16.03 -3.04 -0.05 -29.20 16 9 C -0.07 -2.68 5.18 29.10 0.15 -2.53 16 10 C -0.19 -9.27 4.43 -19.40 -0.09 -9.35 16 11 C -0.08 -3.67 9.66 22.22 0.21 -3.45 16 12 C -0.25 -11.38 10.05 22.46 0.23 -11.16 16 13 C -0.10 -4.78 10.02 22.22 0.22 -4.56 16 14 C -0.25 -13.64 7.95 22.73 0.18 -13.46 16 15 C 0.09 4.75 5.30 -21.29 -0.11 4.63 16 16 C -0.54 -29.88 8.08 23.46 0.19 -29.69 16 17 H 0.07 3.65 6.73 -2.91 -0.02 3.63 16 18 C 0.01 0.27 4.94 85.25 0.42 0.69 16 19 N -0.82 -45.51 12.31 21.82 0.27 -45.24 16 20 Si 1.11 45.31 30.00 68.60 2.06 47.37 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 24 H 0.06 1.29 7.85 -2.39 -0.02 1.27 16 25 H 0.08 1.19 7.94 -2.39 -0.02 1.17 16 26 H 0.06 1.27 7.66 -2.39 -0.02 1.25 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.75 8.05 -2.39 -0.02 0.73 16 29 H 0.07 0.75 8.06 -2.39 -0.02 0.73 16 30 H 0.13 2.05 8.04 -2.91 -0.02 2.02 16 31 H 0.06 1.70 5.79 -2.39 -0.01 1.69 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.41 9.06 8.46 -92.71 -0.78 8.28 16 34 H 0.11 3.48 8.05 -2.39 -0.02 3.46 16 35 H 0.09 3.70 7.06 -2.39 -0.02 3.68 16 36 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 37 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 38 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 39 H 0.08 4.85 6.49 -2.91 -0.02 4.83 16 40 H 0.28 16.38 6.68 -92.71 -0.62 15.76 16 Total: -1.00 -70.23 335.30 4.11 -66.12 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: 0.40 Total: 35.78 kcal Atomic # 6 Polarization: -55.28 SS G_CDS: 4.02 Total: -51.25 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -2.32 Total: -68.82 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.05 Total: -29.20 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.06 Total: 47.37 kcal Total: -70.23 4.11 -66.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791011348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.908 kcal (2) G-P(sol) polarization free energy of solvation -70.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds