Wall clock time and date at job start Mon Mar 30 2020 02:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47231 * 2 1 4 4 H 1.09002 * 115.55352 * 29.27730 * 3 2 1 5 5 C 1.53005 * 117.50155 * 243.60965 * 3 2 1 6 6 C 1.53000 * 117.50293 * 174.98549 * 3 2 1 7 7 H 1.09003 * 117.49799 * 0.02562 * 6 3 2 8 8 N 1.46501 * 117.50431 * 214.97849 * 6 3 2 9 9 C 1.34774 * 120.00175 * 154.99384 * 8 6 3 10 10 O 1.21284 * 119.99827 * 0.02562 * 9 8 6 11 11 C 1.50692 * 119.99870 * 180.02562 * 9 8 6 12 12 C 1.50703 * 109.47026 * 180.02562 * 11 9 8 13 13 C 1.37633 * 120.12982 * 264.72644 * 12 11 9 14 14 C 1.38618 * 120.24907 * 179.69923 * 13 12 11 15 15 C 1.38658 * 120.50067 * 0.60262 * 14 13 12 16 16 C 1.37602 * 120.24614 * 359.67887 * 15 14 13 17 17 C 1.40705 * 120.12790 * 85.00410 * 12 11 9 18 18 C 1.41396 * 120.24272 * 0.02562 * 17 12 11 19 19 H 1.08003 * 120.00072 * 334.58171 * 18 17 12 20 20 C 1.39940 * 120.00083 * 154.58380 * 18 17 12 21 21 N 1.30822 * 120.00284 * 342.83993 * 20 18 17 22 22 Si 1.86804 * 119.99918 * 162.83773 * 20 18 17 23 23 H 1.48501 * 109.47214 * 94.65319 * 22 20 18 24 24 H 1.48506 * 109.46958 * 214.64872 * 22 20 18 25 25 H 1.48495 * 109.47486 * 334.65143 * 22 20 18 26 26 H 1.08994 * 109.47062 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47211 * 60.00009 * 1 2 3 28 28 H 1.08998 * 109.46916 * 299.99704 * 1 2 3 29 29 H 1.08999 * 109.47211 * 119.99990 * 2 1 3 30 30 H 1.09004 * 109.47292 * 240.00431 * 2 1 3 31 31 H 1.09005 * 117.49369 * 0.02562 * 5 3 2 32 32 H 1.08998 * 117.49870 * 144.99314 * 5 3 2 33 33 H 0.96998 * 119.99935 * 335.00427 * 8 6 3 34 34 H 1.09003 * 109.47610 * 300.00303 * 11 9 8 35 35 H 1.08995 * 109.47664 * 60.00539 * 11 9 8 36 36 H 1.07999 * 119.87387 * 359.97438 * 13 12 11 37 37 H 1.07998 * 119.74957 * 180.29977 * 14 13 12 38 38 H 1.07995 * 119.87802 * 179.70204 * 15 14 13 39 39 H 1.07998 * 120.12284 * 180.02562 * 16 15 14 40 40 H 0.96993 * 120.00326 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3880 2.1717 0.4809 5 6 2.8442 1.9075 -1.2157 6 6 3.5501 1.6579 0.1186 7 1 4.1803 0.7720 0.1962 8 7 4.0095 2.8286 0.8702 9 6 5.2309 2.8268 1.4399 10 8 5.9499 1.8563 1.3301 11 6 5.7031 4.0308 2.2135 12 6 7.0905 3.7748 2.7433 13 6 7.2646 3.3012 4.0238 14 6 8.5393 3.0590 4.5115 15 6 9.6529 3.3021 3.7219 16 6 9.5029 3.7811 2.4407 17 6 8.2133 4.0247 1.9329 18 6 8.0470 4.5174 0.6180 19 1 7.1287 4.3273 0.0821 20 6 9.0722 5.2514 0.0109 21 7 10.0264 5.7695 0.7407 22 14 9.0782 5.4915 -1.8416 23 1 8.4274 6.7839 -2.1754 24 1 10.4789 5.5008 -2.3349 25 1 8.3333 4.3809 -2.4872 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.0096 1.1858 -2.0157 32 1 2.7213 2.9425 -1.5346 33 1 3.4346 3.6049 0.9578 34 1 5.7200 4.9008 1.5570 35 1 5.0246 4.2169 3.0459 36 1 6.4045 3.1133 4.6494 37 1 8.6663 2.6828 5.5159 38 1 10.6416 3.1144 4.1138 39 1 10.3716 3.9694 1.8273 40 1 10.7372 6.2779 0.3200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798094271.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:06 Heat of formation + Delta-G solvation = -12.296571 kcal Electronic energy + Delta-G solvation = -20392.156716 eV Core-core repulsion = 17364.461207 eV Total energy + Delta-G solvation = -3027.695509 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 6.43 seconds Orbital eigenvalues (eV) -39.44279 -37.89293 -36.93584 -33.59076 -33.40185 -31.83213 -30.99314 -29.41267 -26.80634 -24.98843 -23.97669 -22.13637 -20.89524 -20.68924 -20.30945 -19.22924 -17.14661 -16.40054 -16.24984 -15.37439 -14.72164 -14.55476 -14.48003 -14.35932 -13.63759 -13.31288 -13.23225 -12.69478 -12.54704 -12.53961 -12.21435 -11.70170 -11.54273 -11.39523 -11.25631 -11.20063 -11.07766 -10.94081 -10.74309 -10.67419 -10.36719 -10.05288 -9.44526 -9.35030 -9.15269 -9.10275 -8.39065 -7.27753 -7.25638 -6.71094 -4.30321 2.81250 2.99442 3.08973 3.14997 3.23974 3.30306 3.56215 3.93974 3.96633 4.66518 4.69842 4.79834 4.92117 5.06029 5.18375 5.33256 5.47759 5.57785 5.76586 5.80337 5.82179 5.91369 5.97463 5.99054 6.06866 6.19585 6.26562 6.32314 6.46510 6.54968 6.83792 6.85779 7.12075 7.33475 7.46144 7.67819 7.91332 7.99196 8.11419 8.17141 8.35321 8.68598 8.88244 8.95408 9.05471 10.23213 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.005059 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.575404 B = 5533.459729 C = 6877.452193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.164 4.164 4 H 0.104 0.896 5 C -0.193 4.193 6 C 0.093 3.907 7 H 0.134 0.866 8 N -0.717 5.717 9 C 0.518 3.482 10 O -0.519 6.519 11 C -0.070 4.070 12 C -0.182 4.182 13 C -0.081 4.081 14 C -0.240 4.240 15 C -0.107 4.107 16 C -0.161 4.161 17 C 0.129 3.871 18 C -0.456 4.456 19 H 0.074 0.926 20 C 0.078 3.922 21 N -0.795 5.795 22 Si 0.901 3.099 23 H -0.271 1.271 24 H -0.275 1.275 25 H -0.261 1.261 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.396 0.604 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.060 -3.793 -2.624 14.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.184 4.184 4 H 0.122 0.878 5 C -0.232 4.232 6 C -0.014 4.014 7 H 0.152 0.848 8 N -0.369 5.369 9 C 0.306 3.694 10 O -0.392 6.392 11 C -0.110 4.110 12 C -0.184 4.184 13 C -0.099 4.099 14 C -0.260 4.260 15 C -0.125 4.125 16 C -0.180 4.180 17 C 0.127 3.873 18 C -0.486 4.486 19 H 0.092 0.908 20 C -0.140 4.140 21 N -0.420 5.420 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.185 1.185 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.230 0.770 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.263 -4.343 -2.698 14.214 hybrid contribution -0.241 0.623 -0.874 1.100 sum -13.504 -3.720 -3.573 14.455 Atomic orbital electron populations 1.21736 0.95563 1.01444 1.01780 1.21099 0.95785 0.93986 1.02220 1.22882 0.94411 0.98359 1.02759 0.87811 1.23595 1.04612 1.02591 0.92409 1.21621 0.92995 0.92136 0.94617 0.84849 1.45593 1.18333 1.17537 1.55432 1.21282 0.79691 0.90067 0.78366 1.90672 1.53878 1.35722 1.58908 1.20265 0.96203 0.95725 0.98802 1.19031 0.92180 1.12635 0.94511 1.20299 0.95496 0.99163 0.94951 1.20299 0.92965 1.13387 0.99320 1.20673 0.96265 1.00249 0.95325 1.21284 0.97948 1.03507 0.95245 1.17331 0.90462 0.87638 0.91873 1.19476 1.01298 1.29223 0.98612 0.90785 1.25872 0.94446 0.93593 1.00063 1.69823 1.10450 1.24475 1.37263 0.86416 0.78576 0.79392 0.83072 1.19633 1.20020 1.18488 0.92811 0.92714 0.92760 0.91485 0.91714 0.88360 0.88702 0.76991 0.88535 0.90557 0.89772 0.89683 0.89598 0.86575 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.87 37.16 0.37 -0.78 16 2 C -0.09 -0.86 6.22 -26.73 -0.17 -1.03 16 3 C -0.16 -1.71 5.66 -90.62 -0.51 -2.22 16 4 H 0.10 0.99 8.07 -51.93 -0.42 0.57 16 5 C -0.19 -2.17 10.10 -26.73 -0.27 -2.44 16 6 C 0.09 1.28 6.15 -67.93 -0.42 0.87 16 7 H 0.13 2.12 7.40 -51.93 -0.38 1.73 16 8 N -0.72 -10.75 5.57 -53.81 -0.30 -11.05 16 9 C 0.52 10.26 7.47 -10.99 -0.08 10.17 16 10 O -0.52 -12.64 15.60 5.55 0.09 -12.55 16 11 C -0.07 -1.39 5.18 -29.04 -0.15 -1.54 16 12 C -0.18 -4.43 4.43 -103.91 -0.46 -4.89 16 13 C -0.08 -1.89 9.66 -39.66 -0.38 -2.28 16 14 C -0.24 -5.69 10.05 -39.29 -0.39 -6.08 16 15 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 16 C -0.16 -4.36 8.69 -38.87 -0.34 -4.69 16 17 C 0.13 3.51 5.57 -106.82 -0.59 2.91 16 18 C -0.46 -12.17 8.15 -37.74 -0.31 -12.48 16 19 H 0.07 1.93 6.66 -52.48 -0.35 1.58 16 20 C 0.08 1.97 5.15 -17.34 -0.09 1.88 16 21 N -0.79 -20.71 10.98 55.55 0.61 -20.10 16 22 Si 0.90 19.07 29.59 -169.99 -5.03 14.04 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.58 7.88 -51.93 -0.41 0.17 16 31 H 0.10 1.03 8.03 -51.93 -0.42 0.61 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.40 4.66 8.83 -40.82 -0.36 4.30 16 34 H 0.10 1.87 7.05 -51.93 -0.37 1.50 16 35 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 36 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.12 3.23 6.21 -52.49 -0.33 2.90 16 40 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -30.77 336.78 -9.72 -40.50 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -5.97 Total: 9.73 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -4.20 Total: -25.64 kcal Atomic # 7 Polarization: -31.46 SS G_CDS: 0.31 Total: -31.15 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.77 -9.72 -40.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798094271.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.200 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.43 seconds