Wall clock time and date at job start Mon Mar 30 2020 02:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47231 * 2 1 4 4 H 1.09002 * 115.55352 * 29.27730 * 3 2 1 5 5 C 1.53005 * 117.50155 * 243.60965 * 3 2 1 6 6 C 1.53000 * 117.50293 * 174.98549 * 3 2 1 7 7 H 1.09003 * 117.49799 * 0.02562 * 6 3 2 8 8 N 1.46501 * 117.50431 * 214.97849 * 6 3 2 9 9 C 1.34774 * 120.00175 * 154.99384 * 8 6 3 10 10 O 1.21284 * 119.99827 * 0.02562 * 9 8 6 11 11 C 1.50692 * 119.99870 * 180.02562 * 9 8 6 12 12 C 1.50703 * 109.47026 * 180.02562 * 11 9 8 13 13 C 1.37633 * 120.12982 * 264.72644 * 12 11 9 14 14 C 1.38618 * 120.24907 * 179.69923 * 13 12 11 15 15 C 1.38658 * 120.50067 * 0.60262 * 14 13 12 16 16 C 1.37602 * 120.24614 * 359.67887 * 15 14 13 17 17 C 1.40705 * 120.12790 * 85.00410 * 12 11 9 18 18 C 1.41396 * 120.24272 * 0.02562 * 17 12 11 19 19 H 1.08003 * 120.00072 * 334.58171 * 18 17 12 20 20 C 1.39940 * 120.00083 * 154.58380 * 18 17 12 21 21 N 1.30822 * 120.00284 * 342.83993 * 20 18 17 22 22 Si 1.86804 * 119.99918 * 162.83773 * 20 18 17 23 23 H 1.48501 * 109.47214 * 94.65319 * 22 20 18 24 24 H 1.48506 * 109.46958 * 214.64872 * 22 20 18 25 25 H 1.48495 * 109.47486 * 334.65143 * 22 20 18 26 26 H 1.08994 * 109.47062 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47211 * 60.00009 * 1 2 3 28 28 H 1.08998 * 109.46916 * 299.99704 * 1 2 3 29 29 H 1.08999 * 109.47211 * 119.99990 * 2 1 3 30 30 H 1.09004 * 109.47292 * 240.00431 * 2 1 3 31 31 H 1.09005 * 117.49369 * 0.02562 * 5 3 2 32 32 H 1.08998 * 117.49870 * 144.99314 * 5 3 2 33 33 H 0.96998 * 119.99935 * 335.00427 * 8 6 3 34 34 H 1.09003 * 109.47610 * 300.00303 * 11 9 8 35 35 H 1.08995 * 109.47664 * 60.00539 * 11 9 8 36 36 H 1.07999 * 119.87387 * 359.97438 * 13 12 11 37 37 H 1.07998 * 119.74957 * 180.29977 * 14 13 12 38 38 H 1.07995 * 119.87802 * 179.70204 * 15 14 13 39 39 H 1.07998 * 120.12284 * 180.02562 * 16 15 14 40 40 H 0.96993 * 120.00326 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3880 2.1717 0.4809 5 6 2.8442 1.9075 -1.2157 6 6 3.5501 1.6579 0.1186 7 1 4.1803 0.7720 0.1962 8 7 4.0095 2.8286 0.8702 9 6 5.2309 2.8268 1.4399 10 8 5.9499 1.8563 1.3301 11 6 5.7031 4.0308 2.2135 12 6 7.0905 3.7748 2.7433 13 6 7.2646 3.3012 4.0238 14 6 8.5393 3.0590 4.5115 15 6 9.6529 3.3021 3.7219 16 6 9.5029 3.7811 2.4407 17 6 8.2133 4.0247 1.9329 18 6 8.0470 4.5174 0.6180 19 1 7.1287 4.3273 0.0821 20 6 9.0722 5.2514 0.0109 21 7 10.0264 5.7695 0.7407 22 14 9.0782 5.4915 -1.8416 23 1 8.4274 6.7839 -2.1754 24 1 10.4789 5.5008 -2.3349 25 1 8.3333 4.3809 -2.4872 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.0096 1.1858 -2.0157 32 1 2.7213 2.9425 -1.5346 33 1 3.4346 3.6049 0.9578 34 1 5.7200 4.9008 1.5570 35 1 5.0246 4.2169 3.0459 36 1 6.4045 3.1133 4.6494 37 1 8.6663 2.6828 5.5159 38 1 10.6416 3.1144 4.1138 39 1 10.3716 3.9694 1.8273 40 1 10.7372 6.2779 0.3200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798094271.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:57 Heat of formation + Delta-G solvation = -29.530212 kcal Electronic energy + Delta-G solvation = -20392.904023 eV Core-core repulsion = 17364.461207 eV Total energy + Delta-G solvation = -3028.442816 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 4.14 seconds Orbital eigenvalues (eV) -40.88334 -39.38842 -38.41071 -35.50303 -34.59798 -33.41562 -32.10804 -31.33257 -28.52519 -26.88211 -24.71846 -23.40002 -22.81237 -21.88669 -21.54156 -20.80710 -19.06835 -17.85531 -17.51715 -17.15687 -16.25655 -16.18472 -15.56319 -15.36407 -15.24367 -15.02637 -14.74088 -14.37448 -13.64301 -13.55669 -13.46372 -13.36101 -12.94716 -12.89883 -12.75361 -12.71126 -12.49792 -12.14099 -12.13533 -11.96930 -11.93182 -11.31973 -11.22438 -11.01523 -11.01291 -10.70754 -9.58116 -9.23034 -9.16003 -8.60283 -6.28903 0.99544 1.13355 1.35253 1.46903 1.53616 1.77293 2.19730 2.27303 2.78307 2.94276 3.72490 3.79761 3.87026 4.04872 4.12486 4.28631 4.39015 4.42624 4.50933 4.61929 4.62883 4.71627 4.80901 4.81575 4.91505 4.98274 5.09571 5.17942 5.20111 5.21639 5.29011 5.37026 5.48731 5.55255 5.65024 5.77798 6.04240 6.17042 6.21891 6.42337 6.66311 6.75428 6.99432 7.11679 7.45013 8.36491 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.005059 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.575404 B = 5533.459729 C = 6877.452193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.134 4.134 4 H 0.121 0.879 5 C -0.182 4.182 6 C 0.054 3.946 7 H 0.105 0.895 8 N -0.696 5.696 9 C 0.519 3.481 10 O -0.576 6.576 11 C -0.069 4.069 12 C -0.189 4.189 13 C -0.091 4.091 14 C -0.243 4.243 15 C -0.117 4.117 16 C -0.196 4.196 17 C 0.096 3.904 18 C -0.484 4.484 19 H 0.071 0.929 20 C 0.037 3.963 21 N -0.825 5.825 22 Si 0.971 3.029 23 H -0.254 1.254 24 H -0.268 1.268 25 H -0.268 1.268 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.415 0.585 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.649 -3.489 -2.982 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 C -0.154 4.154 4 H 0.139 0.861 5 C -0.220 4.220 6 C -0.052 4.052 7 H 0.123 0.877 8 N -0.348 5.348 9 C 0.307 3.693 10 O -0.454 6.454 11 C -0.108 4.108 12 C -0.191 4.191 13 C -0.110 4.110 14 C -0.263 4.263 15 C -0.135 4.135 16 C -0.215 4.215 17 C 0.094 3.906 18 C -0.513 4.513 19 H 0.089 0.911 20 C -0.177 4.177 21 N -0.452 5.452 22 Si 0.792 3.208 23 H -0.179 1.179 24 H -0.192 1.192 25 H -0.193 1.193 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.252 0.748 34 H 0.116 0.884 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.912 -4.012 -3.055 16.691 hybrid contribution 0.499 0.468 -0.676 0.962 sum -15.413 -3.544 -3.731 16.249 Atomic orbital electron populations 1.21709 0.93961 1.02202 1.02273 1.21159 0.97111 0.93127 1.02055 1.22955 0.91788 0.99453 1.01153 0.86084 1.23673 1.03052 1.03496 0.91808 1.21674 0.95148 0.91040 0.97368 0.87723 1.45294 1.16937 1.18565 1.53986 1.21181 0.80565 0.89142 0.78371 1.90652 1.55805 1.37605 1.61302 1.20280 0.94649 0.95700 1.00182 1.19535 0.93744 1.11047 0.94726 1.20747 0.96696 0.98394 0.95117 1.20718 0.92737 1.12345 1.00454 1.20950 0.97936 0.99876 0.94772 1.21302 0.97749 1.06025 0.96468 1.17732 0.91396 0.88614 0.92857 1.19625 1.02052 1.30501 0.99161 0.91128 1.26660 0.93764 0.92872 1.04443 1.69881 1.11103 1.25015 1.39160 0.85371 0.78800 0.79505 0.77143 1.17872 1.19233 1.19265 0.92038 0.92091 0.92354 0.92187 0.91539 0.87690 0.87661 0.74844 0.88377 0.86766 0.86505 0.86666 0.87671 0.88566 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.87 71.98 0.71 -1.11 16 2 C -0.10 -1.60 6.22 30.59 0.19 -1.41 16 3 C -0.13 -2.46 5.66 -10.79 -0.06 -2.52 16 4 H 0.12 1.85 8.07 -2.39 -0.02 1.83 16 5 C -0.18 -3.69 10.10 30.60 0.31 -3.38 16 6 C 0.05 1.44 6.15 44.99 0.28 1.72 16 7 H 0.10 3.44 7.40 -2.39 -0.02 3.42 16 8 N -0.70 -19.99 5.57 -442.53 -2.46 -22.45 16 9 C 0.52 20.44 7.47 87.65 0.65 21.09 16 10 O -0.58 -28.82 15.60 -3.04 -0.05 -28.87 16 11 C -0.07 -2.65 5.18 29.10 0.15 -2.50 16 12 C -0.19 -9.23 4.43 -19.40 -0.09 -9.32 16 13 C -0.09 -4.19 9.66 22.22 0.21 -3.97 16 14 C -0.24 -11.29 10.05 22.46 0.23 -11.06 16 15 C -0.12 -5.88 10.02 22.22 0.22 -5.66 16 16 C -0.20 -11.06 8.69 22.73 0.20 -10.86 16 17 C 0.10 5.38 5.57 -21.29 -0.12 5.26 16 18 C -0.48 -26.59 8.15 23.46 0.19 -26.40 16 19 H 0.07 3.78 6.66 -2.91 -0.02 3.76 16 20 C 0.04 1.93 5.15 85.26 0.44 2.37 16 21 N -0.83 -44.30 10.98 21.82 0.24 -44.06 16 22 Si 0.97 39.64 29.59 68.60 2.03 41.67 16 23 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 24 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.08 7.88 -2.38 -0.02 1.06 16 31 H 0.10 2.00 8.03 -2.38 -0.02 1.98 16 32 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.41 8.72 8.83 -92.71 -0.82 7.91 16 34 H 0.10 3.75 7.05 -2.39 -0.02 3.73 16 35 H 0.11 3.45 8.05 -2.39 -0.02 3.43 16 36 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 37 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 38 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.10 5.67 6.21 -2.91 -0.02 5.65 16 40 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 Total: -1.00 -69.50 336.78 3.49 -66.01 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.22 Total: 35.46 kcal Atomic # 6 Polarization: -51.27 SS G_CDS: 3.52 Total: -47.75 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: -2.22 Total: -66.51 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.05 Total: -28.87 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -69.50 3.49 -66.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798094271.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.480 kcal (2) G-P(sol) polarization free energy of solvation -69.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.14 seconds