Wall clock time and date at job start Mon Mar 30 2020 02:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 120.00188 * 2 1 4 4 H 1.09006 * 109.47022 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47082 * 120.00274 * 3 2 1 6 6 C 1.53001 * 109.47090 * 295.00062 * 5 3 2 7 7 C 1.52998 * 109.47076 * 240.00462 * 3 2 1 8 8 C 1.50703 * 109.47296 * 64.99926 * 7 3 2 9 9 O 1.21290 * 119.99749 * 359.97438 * 8 7 3 10 10 N 1.34777 * 120.00159 * 179.97438 * 8 7 3 11 11 C 1.39933 * 120.00213 * 174.87159 * 10 8 7 12 12 C 1.39289 * 119.94851 * 146.37660 * 11 10 8 13 13 C 1.38486 * 120.42884 * 179.97438 * 12 11 10 14 14 C 1.37683 * 120.32381 * 0.02562 * 13 12 11 15 15 C 1.40746 * 119.88546 * 359.97438 * 14 13 12 16 16 C 1.41397 * 120.21566 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00858 * 151.74110 * 16 15 14 18 18 C 1.39937 * 119.99829 * 331.74504 * 16 15 14 19 19 N 1.30828 * 119.99927 * 349.00191 * 18 16 15 20 20 Si 1.86799 * 120.00242 * 169.01093 * 18 16 15 21 21 H 1.48500 * 109.47353 * 59.99569 * 20 18 16 22 22 H 1.48504 * 109.47192 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46895 * 299.99374 * 20 18 16 24 24 C 1.38244 * 119.94517 * 326.09781 * 11 10 8 25 25 H 1.07993 * 119.99947 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99468 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99468 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47046 * 174.99944 * 5 3 2 29 29 H 1.09005 * 109.47044 * 55.00282 * 5 3 2 30 30 H 1.09002 * 109.46976 * 60.00466 * 6 5 3 31 31 H 1.08996 * 109.47180 * 299.99802 * 6 5 3 32 32 H 1.09004 * 109.46818 * 179.97438 * 6 5 3 33 33 H 1.09001 * 109.47467 * 184.99909 * 7 3 2 34 34 H 1.09003 * 109.47180 * 304.99838 * 7 3 2 35 35 H 0.97002 * 119.99937 * 354.87314 * 10 8 7 36 36 H 1.07996 * 119.78404 * 359.97438 * 12 11 10 37 37 H 1.08001 * 119.84151 * 180.02562 * 13 12 11 38 38 H 1.07995 * 120.06269 * 179.97438 * 14 13 12 39 39 H 0.96995 * 120.00643 * 180.02562 * 19 18 16 40 40 H 1.08004 * 120.15928 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3861 1.2492 6 6 2.0566 1.4306 2.4953 7 6 2.9431 1.3861 -1.2493 8 6 2.0697 1.4301 -2.4766 9 8 0.8625 1.3991 -2.3632 10 7 2.6299 1.5038 -3.7002 11 6 1.8256 1.4364 -4.8433 12 6 2.1737 2.1591 -5.9820 13 6 1.3851 2.0993 -7.1189 14 6 0.2472 1.3244 -7.1357 15 6 -0.1171 0.5887 -5.9925 16 6 -1.2840 -0.2098 -6.0022 17 1 -1.3438 -1.0866 -5.3745 18 6 -2.3616 0.1360 -6.8253 19 7 -2.3832 1.3014 -7.4194 20 14 -3.7693 -1.0661 -7.0754 21 1 -4.4007 -1.3685 -5.7658 22 1 -4.7784 -0.4647 -7.9839 23 1 -3.2481 -2.3208 -7.6752 24 6 0.6899 0.6482 -4.8425 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9354 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 3.5542 2.2877 1.2055 29 1 3.5907 0.5103 1.2950 30 1 1.4457 0.5289 2.5390 31 1 1.4092 2.3063 2.4495 32 1 2.6833 1.4878 3.3853 33 1 3.5540 2.2878 -1.2057 34 1 3.5906 0.5104 -1.2953 35 1 3.5908 1.6035 -3.7884 36 1 3.0642 2.7701 -5.9783 37 1 1.6642 2.6632 -7.9967 38 1 -0.3648 1.2812 -8.0244 39 1 -3.1303 1.5414 -7.9896 40 1 0.4215 0.0842 -3.9613 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821953641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:44 Heat of formation + Delta-G solvation = -14.507127 kcal Electronic energy + Delta-G solvation = -20482.483101 eV Core-core repulsion = 17454.691735 eV Total energy + Delta-G solvation = -3027.791366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.75562 -37.53984 -36.35588 -34.31009 -32.95570 -31.65179 -30.48228 -29.76463 -27.90351 -25.27095 -24.62922 -21.74903 -21.31643 -20.75039 -19.58548 -19.28022 -17.64024 -16.51030 -15.54520 -15.37568 -15.06916 -14.60764 -14.49235 -14.40728 -13.91560 -13.41959 -13.20734 -12.85630 -12.73342 -12.20082 -12.08459 -11.90835 -11.54792 -11.30734 -11.21842 -11.18709 -11.07788 -10.79709 -10.60705 -10.46187 -10.40292 -10.05837 -9.69496 -9.44182 -9.15126 -8.87685 -8.72532 -7.36994 -6.82636 -6.61790 -4.30361 2.65187 2.71502 2.90101 3.11701 3.15397 3.24298 3.47056 3.73312 4.01507 4.71779 4.79274 4.81552 4.96832 5.23617 5.27005 5.42441 5.51936 5.55867 5.71910 5.77300 5.85075 5.87425 5.92429 6.13238 6.22823 6.28278 6.34464 6.42835 6.85610 6.95811 7.07217 7.11377 7.13311 7.15438 7.32154 7.62806 7.78897 8.02897 8.14164 8.25700 8.34376 8.70121 8.84530 9.00041 9.04094 10.31389 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.004662 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.668194 B = 6004.880668 C = 7189.195798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.157 4.157 3 C -0.043 4.043 4 H 0.081 0.919 5 C -0.115 4.115 6 C -0.151 4.151 7 C -0.133 4.133 8 C 0.499 3.501 9 O -0.505 6.505 10 N -0.674 5.674 11 C 0.151 3.849 12 C -0.261 4.261 13 C -0.095 4.095 14 C -0.169 4.169 15 C 0.119 3.881 16 C -0.459 4.459 17 H 0.075 0.925 18 C 0.074 3.926 19 N -0.802 5.802 20 Si 0.911 3.089 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.265 1.265 24 C -0.207 4.207 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.396 0.604 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.279 0.721 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.534 -0.248 11.826 15.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.175 4.175 3 C -0.062 4.062 4 H 0.099 0.901 5 C -0.152 4.152 6 C -0.208 4.208 7 C -0.173 4.173 8 C 0.285 3.715 9 O -0.379 6.379 10 N -0.318 5.318 11 C 0.059 3.941 12 C -0.282 4.282 13 C -0.114 4.114 14 C -0.189 4.189 15 C 0.116 3.884 16 C -0.489 4.489 17 H 0.093 0.907 18 C -0.142 4.142 19 N -0.428 5.428 20 Si 0.735 3.265 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.189 1.189 24 C -0.228 4.228 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.229 0.771 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.495 -0.140 11.810 14.549 hybrid contribution -0.149 -0.329 -0.329 0.489 sum 8.347 -0.469 11.481 14.202 Atomic orbital electron populations 1.23711 0.95932 1.01418 0.98330 1.22557 0.95968 0.96851 1.02120 1.20136 0.96538 0.97276 0.92280 0.90066 1.21535 0.97841 1.01703 0.94168 1.21758 0.99818 1.02249 0.96994 1.21709 0.98682 1.03841 0.93063 1.20650 0.89469 0.77029 0.84344 1.90773 1.14437 1.46589 1.86093 1.43544 1.09979 1.73127 1.05187 1.17448 0.93490 0.97908 0.85220 1.20062 1.03948 1.08799 0.95387 1.20478 0.95629 0.99257 0.96027 1.21399 0.96439 1.01778 0.99272 1.17502 0.91153 0.90291 0.89461 1.19501 0.98356 1.10014 1.20999 0.90687 1.25868 0.99597 0.95050 0.93722 1.69794 1.30572 1.18702 1.23763 0.86334 0.80013 0.81035 0.79081 1.19063 1.20383 1.18934 1.20983 0.98443 1.04881 0.98541 0.89227 0.88586 0.88271 0.92000 0.91965 0.92338 0.92806 0.93124 0.89234 0.89140 0.77054 0.89410 0.89120 0.86137 0.91020 0.87536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 13.22 29.01 0.38 -1.94 16 2 C -0.16 -2.11 6.76 -36.03 -0.24 -2.35 16 3 C -0.04 -0.53 1.82 -91.77 -0.17 -0.69 16 4 H 0.08 1.13 7.60 -51.93 -0.39 0.74 16 5 C -0.11 -1.06 5.39 -26.73 -0.14 -1.20 16 6 C -0.15 -1.36 9.73 37.16 0.36 -1.00 16 7 C -0.13 -1.58 5.17 -27.88 -0.14 -1.73 16 8 C 0.50 8.78 7.31 -10.98 -0.08 8.70 16 9 O -0.51 -11.14 11.88 5.55 0.07 -11.08 16 10 N -0.67 -12.06 5.34 -9.91 -0.05 -12.11 16 11 C 0.15 3.47 6.26 -83.77 -0.52 2.95 16 12 C -0.26 -5.85 9.97 -39.10 -0.39 -6.24 16 13 C -0.09 -2.26 10.02 -39.69 -0.40 -2.66 16 14 C -0.17 -4.53 8.66 -38.84 -0.34 -4.86 16 15 C 0.12 3.33 5.55 -106.85 -0.59 2.73 16 16 C -0.46 -12.82 9.06 -37.74 -0.34 -13.16 16 17 H 0.07 2.04 7.87 -52.49 -0.41 1.62 16 18 C 0.07 1.94 5.25 -17.34 -0.09 1.85 16 19 N -0.80 -21.60 10.82 55.55 0.60 -21.00 16 20 Si 0.91 19.55 29.57 -169.99 -5.03 14.52 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 23 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 24 C -0.21 -5.45 8.39 -38.68 -0.32 -5.77 16 25 H 0.09 1.25 8.06 -52.49 -0.42 0.82 16 26 H 0.10 1.51 7.83 -52.49 -0.41 1.10 16 27 H 0.10 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.56 7.38 -51.93 -0.38 0.18 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.40 5.42 8.82 -40.82 -0.36 5.06 16 36 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 38 H 0.12 3.31 6.18 -52.49 -0.32 2.99 16 39 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 40 H 0.11 2.89 6.44 -52.48 -0.34 2.55 16 LS Contribution 332.99 15.07 5.02 5.02 Total: -1.00 -31.16 332.99 -8.42 -39.58 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -5.99 Total: 10.44 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -3.03 Total: -25.37 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.55 Total: -33.10 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.07 Total: -11.08 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.16 -8.42 -39.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821953641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.072 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds