Wall clock time and date at job start Mon Mar 30 2020 02:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 120.00188 * 2 1 4 4 H 1.09006 * 109.47022 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47082 * 120.00274 * 3 2 1 6 6 C 1.53001 * 109.47090 * 295.00062 * 5 3 2 7 7 C 1.52998 * 109.47076 * 240.00462 * 3 2 1 8 8 C 1.50703 * 109.47296 * 64.99926 * 7 3 2 9 9 O 1.21290 * 119.99749 * 359.97438 * 8 7 3 10 10 N 1.34777 * 120.00159 * 179.97438 * 8 7 3 11 11 C 1.39933 * 120.00213 * 174.87159 * 10 8 7 12 12 C 1.39289 * 119.94851 * 146.37660 * 11 10 8 13 13 C 1.38486 * 120.42884 * 179.97438 * 12 11 10 14 14 C 1.37683 * 120.32381 * 0.02562 * 13 12 11 15 15 C 1.40746 * 119.88546 * 359.97438 * 14 13 12 16 16 C 1.41397 * 120.21566 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00858 * 151.74110 * 16 15 14 18 18 C 1.39937 * 119.99829 * 331.74504 * 16 15 14 19 19 N 1.30828 * 119.99927 * 349.00191 * 18 16 15 20 20 Si 1.86799 * 120.00242 * 169.01093 * 18 16 15 21 21 H 1.48500 * 109.47353 * 59.99569 * 20 18 16 22 22 H 1.48504 * 109.47192 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46895 * 299.99374 * 20 18 16 24 24 C 1.38244 * 119.94517 * 326.09781 * 11 10 8 25 25 H 1.07993 * 119.99947 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99468 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99468 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47046 * 174.99944 * 5 3 2 29 29 H 1.09005 * 109.47044 * 55.00282 * 5 3 2 30 30 H 1.09002 * 109.46976 * 60.00466 * 6 5 3 31 31 H 1.08996 * 109.47180 * 299.99802 * 6 5 3 32 32 H 1.09004 * 109.46818 * 179.97438 * 6 5 3 33 33 H 1.09001 * 109.47467 * 184.99909 * 7 3 2 34 34 H 1.09003 * 109.47180 * 304.99838 * 7 3 2 35 35 H 0.97002 * 119.99937 * 354.87314 * 10 8 7 36 36 H 1.07996 * 119.78404 * 359.97438 * 12 11 10 37 37 H 1.08001 * 119.84151 * 180.02562 * 13 12 11 38 38 H 1.07995 * 120.06269 * 179.97438 * 14 13 12 39 39 H 0.96995 * 120.00643 * 180.02562 * 19 18 16 40 40 H 1.08004 * 120.15928 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3861 1.2492 6 6 2.0566 1.4306 2.4953 7 6 2.9431 1.3861 -1.2493 8 6 2.0697 1.4301 -2.4766 9 8 0.8625 1.3991 -2.3632 10 7 2.6299 1.5038 -3.7002 11 6 1.8256 1.4364 -4.8433 12 6 2.1737 2.1591 -5.9820 13 6 1.3851 2.0993 -7.1189 14 6 0.2472 1.3244 -7.1357 15 6 -0.1171 0.5887 -5.9925 16 6 -1.2840 -0.2098 -6.0022 17 1 -1.3438 -1.0866 -5.3745 18 6 -2.3616 0.1360 -6.8253 19 7 -2.3832 1.3014 -7.4194 20 14 -3.7693 -1.0661 -7.0754 21 1 -4.4007 -1.3685 -5.7658 22 1 -4.7784 -0.4647 -7.9839 23 1 -3.2481 -2.3208 -7.6752 24 6 0.6899 0.6482 -4.8425 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9354 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 3.5542 2.2877 1.2055 29 1 3.5907 0.5103 1.2950 30 1 1.4457 0.5289 2.5390 31 1 1.4092 2.3063 2.4495 32 1 2.6833 1.4878 3.3853 33 1 3.5540 2.2878 -1.2057 34 1 3.5906 0.5104 -1.2953 35 1 3.5908 1.6035 -3.7884 36 1 3.0642 2.7701 -5.9783 37 1 1.6642 2.6632 -7.9967 38 1 -0.3648 1.2812 -8.0244 39 1 -3.1303 1.5414 -7.9896 40 1 0.4215 0.0842 -3.9613 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821953641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:43 Heat of formation + Delta-G solvation = -32.292780 kcal Electronic energy + Delta-G solvation = -20483.254345 eV Core-core repulsion = 17454.691735 eV Total energy + Delta-G solvation = -3028.562610 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.23914 -39.18060 -37.59908 -36.07070 -34.77155 -32.60486 -31.74374 -31.63912 -29.56078 -27.25731 -25.73696 -23.16491 -22.67781 -22.43509 -21.07488 -20.42144 -19.47926 -17.97325 -17.34830 -16.85451 -16.54099 -16.36781 -15.75005 -15.60560 -14.99425 -14.87875 -14.67938 -14.47561 -14.08714 -13.84538 -13.57341 -13.11579 -13.00315 -12.88090 -12.81398 -12.53275 -12.23870 -12.13263 -12.03121 -11.93866 -11.66041 -11.56413 -11.33700 -11.19946 -10.87429 -10.52712 -10.00244 -9.35354 -8.68133 -8.56629 -6.38842 0.91153 1.01361 1.34361 1.46669 1.49059 1.54514 1.93137 2.20216 2.36187 2.76214 3.73993 3.84071 3.85685 3.91998 4.36949 4.41948 4.47271 4.49161 4.60316 4.63366 4.68583 4.83513 5.01586 5.06297 5.08332 5.09638 5.12469 5.15569 5.20114 5.30298 5.34991 5.42326 5.49159 5.78940 5.83542 5.88345 6.05822 6.08387 6.13443 6.37554 6.69962 6.75856 6.94854 7.02376 7.47669 8.37073 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.004662 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.668194 B = 6004.880668 C = 7189.195798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.145 4.145 3 C -0.045 4.045 4 H 0.056 0.944 5 C -0.106 4.106 6 C -0.153 4.153 7 C -0.119 4.119 8 C 0.490 3.510 9 O -0.556 6.556 10 N -0.664 5.664 11 C 0.158 3.842 12 C -0.250 4.250 13 C -0.095 4.095 14 C -0.196 4.196 15 C 0.087 3.913 16 C -0.503 4.503 17 H 0.064 0.936 18 C 0.033 3.967 19 N -0.833 5.833 20 Si 0.984 3.016 21 H -0.266 1.266 22 H -0.262 1.262 23 H -0.257 1.257 24 C -0.232 4.232 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.115 0.885 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.421 0.579 36 H 0.132 0.868 37 H 0.122 0.878 38 H 0.104 0.896 39 H 0.287 0.713 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.304 0.220 12.505 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.163 4.163 3 C -0.064 4.064 4 H 0.074 0.926 5 C -0.144 4.144 6 C -0.211 4.211 7 C -0.158 4.158 8 C 0.280 3.720 9 O -0.433 6.433 10 N -0.310 5.310 11 C 0.065 3.935 12 C -0.271 4.271 13 C -0.114 4.114 14 C -0.216 4.216 15 C 0.085 3.915 16 C -0.533 4.533 17 H 0.082 0.918 18 C -0.180 4.180 19 N -0.460 5.460 20 Si 0.804 3.196 21 H -0.191 1.191 22 H -0.186 1.186 23 H -0.181 1.181 24 C -0.254 4.254 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.133 0.867 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.259 0.741 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.331 0.343 12.505 16.878 hybrid contribution -0.869 -0.390 -0.472 1.063 sum 10.463 -0.047 12.032 15.945 Atomic orbital electron populations 1.23666 0.96933 1.00576 1.01278 1.22886 0.95576 0.98419 0.99440 1.20185 0.96665 0.95341 0.94243 0.92595 1.21499 0.97369 1.03498 0.91993 1.21777 0.99962 1.01318 0.98000 1.21771 0.97861 1.07090 0.89099 1.21818 0.89565 0.75129 0.85533 1.90781 1.17209 1.48495 1.86795 1.43496 1.10848 1.72760 1.03937 1.17539 0.92744 0.96060 0.87197 1.20512 1.04622 1.07776 0.94166 1.20856 0.94470 0.98234 0.97795 1.21357 0.98033 1.03688 0.98556 1.17847 0.91896 0.91224 0.90575 1.19725 0.99977 1.10700 1.22943 0.91782 1.26719 1.01831 0.96738 0.92759 1.69851 1.31759 1.20106 1.24252 0.85241 0.76576 0.78665 0.79087 1.19103 1.18637 1.18071 1.20939 1.00426 1.06546 0.97488 0.89233 0.90585 0.86670 0.89989 0.90236 0.93469 0.93710 0.91328 0.85408 0.86024 0.74127 0.85030 0.86049 0.87756 0.90263 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.88 13.22 67.78 0.90 -4.99 16 2 C -0.15 -3.84 6.76 25.64 0.17 -3.66 16 3 C -0.05 -1.01 1.82 -11.54 -0.02 -1.03 16 4 H 0.06 1.55 7.60 -2.38 -0.02 1.53 16 5 C -0.11 -1.58 5.39 30.59 0.16 -1.42 16 6 C -0.15 -2.47 9.73 71.98 0.70 -1.77 16 7 C -0.12 -2.39 5.17 29.85 0.15 -2.23 16 8 C 0.49 16.52 7.31 87.66 0.64 17.16 16 9 O -0.56 -25.10 11.88 -3.06 -0.04 -25.14 16 10 N -0.66 -22.11 5.34 -303.64 -1.62 -23.74 16 11 C 0.16 7.13 6.26 38.10 0.24 7.37 16 12 C -0.25 -10.57 9.97 22.58 0.23 -10.35 16 13 C -0.09 -4.41 10.02 22.20 0.22 -4.19 16 14 C -0.20 -10.82 8.66 22.75 0.20 -10.62 16 15 C 0.09 5.12 5.55 -21.31 -0.12 5.00 16 16 C -0.50 -29.82 9.06 23.46 0.21 -29.61 16 17 H 0.06 3.75 7.87 -2.91 -0.02 3.72 16 18 C 0.03 1.78 5.25 85.25 0.45 2.23 16 19 N -0.83 -46.43 10.82 21.82 0.24 -46.19 16 20 Si 0.98 41.28 29.57 68.60 2.03 43.30 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 24 C -0.23 -12.67 8.39 22.85 0.19 -12.48 16 25 H 0.09 2.69 8.06 -2.91 -0.02 2.67 16 26 H 0.08 2.63 7.83 -2.91 -0.02 2.61 16 27 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.05 0.86 7.38 -2.39 -0.02 0.84 16 31 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.42 9.71 8.82 -92.71 -0.82 8.89 16 36 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 37 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 38 H 0.10 5.98 6.18 -2.91 -0.02 5.96 16 39 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 40 H 0.09 4.92 6.44 -2.91 -0.02 4.90 16 Total: -1.00 -73.42 332.99 5.14 -68.29 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: 0.21 Total: 34.08 kcal Atomic # 6 Polarization: -54.92 SS G_CDS: 4.33 Total: -50.60 kcal Atomic # 7 Polarization: -68.54 SS G_CDS: -1.38 Total: -69.93 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.04 Total: -25.14 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -73.42 5.14 -68.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821953641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.992 kcal (2) G-P(sol) polarization free energy of solvation -73.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds