Wall clock time and date at job start Mon Mar 30 2020 01:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47184 * 2 1 4 4 C 1.53002 * 109.47487 * 120.00109 * 2 1 3 5 5 C 1.50700 * 109.46935 * 299.99969 * 4 2 1 6 6 H 1.08007 * 120.00300 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00140 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99529 * 359.72723 * 7 5 4 9 9 Si 1.86799 * 120.00216 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47016 * 179.72407 * 9 7 5 11 11 H 1.48497 * 109.47246 * 299.72581 * 9 7 5 12 12 H 1.48500 * 109.46726 * 59.72624 * 9 7 5 13 13 C 1.52998 * 109.46988 * 240.00276 * 2 1 3 14 14 N 1.46898 * 109.47122 * 66.32666 * 13 2 1 15 15 C 1.47901 * 110.99959 * 292.30576 * 14 13 2 16 16 C 1.53999 * 107.05666 * 214.15773 * 15 14 13 17 17 C 1.54586 * 105.14128 * 1.22482 * 16 15 14 18 18 F 1.39902 * 110.72706 * 263.59772 * 17 16 15 19 19 C 1.50699 * 110.72396 * 140.49280 * 17 16 15 20 20 O 1.20828 * 119.99928 * 251.45195 * 19 17 16 21 21 O 1.34227 * 119.99975 * 71.45566 * 19 17 16 22 22 C 1.48536 * 110.99716 * 174.90901 * 14 13 2 23 23 H 1.09001 * 109.47057 * 286.06056 * 1 2 3 24 24 H 1.08996 * 109.47539 * 46.05563 * 1 2 3 25 25 H 1.09001 * 109.47303 * 166.06387 * 1 2 3 26 26 H 1.08999 * 109.47219 * 184.70386 * 3 2 1 27 27 H 1.09001 * 109.47396 * 304.70833 * 3 2 1 28 28 H 1.09001 * 109.47378 * 64.70789 * 3 2 1 29 29 H 1.09000 * 109.47456 * 180.02562 * 4 2 1 30 30 H 1.08997 * 109.46952 * 59.99551 * 4 2 1 31 31 H 0.97003 * 120.00593 * 0.26819 * 8 7 5 32 32 H 1.09005 * 109.47190 * 186.32413 * 13 2 1 33 33 H 1.08997 * 109.47199 * 306.32138 * 13 2 1 34 34 H 1.08997 * 109.91427 * 333.51109 * 15 14 13 35 35 H 1.08996 * 109.91550 * 94.60657 * 15 14 13 36 36 H 1.08997 * 110.30814 * 120.14337 * 16 15 14 37 37 H 1.09003 * 110.30696 * 242.30901 * 16 15 14 38 38 H 0.96703 * 117.00429 * 180.02562 * 21 19 17 39 39 H 1.08999 * 110.66863 * 278.15160 * 22 14 13 40 40 H 1.09000 * 110.66895 * 41.29200 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5377 -0.0109 2.4797 6 1 0.9164 0.8670 2.3807 7 6 1.8704 -0.4822 3.7320 8 7 2.6217 -1.5549 3.8526 9 14 1.2484 0.3988 5.2572 10 1 1.7374 -0.3056 6.4697 11 1 1.7499 1.7965 5.2607 12 1 -0.2366 0.4056 5.2538 13 6 2.0399 -0.7212 -1.2493 14 7 1.6788 0.0538 -2.4438 15 6 0.2147 0.0541 -2.6528 16 6 -0.0244 0.0606 -4.1741 17 6 1.3867 0.0321 -4.8048 18 9 1.8060 1.3243 -5.1386 19 6 1.4115 -0.8641 -6.0161 20 8 1.9858 -1.9262 -5.9702 21 8 0.7956 -0.4824 -7.1460 22 6 2.2626 -0.5520 -3.6679 23 1 -0.3633 0.2843 0.9876 24 1 -0.3634 0.7131 -0.7399 25 1 -0.3634 -0.9974 -0.2475 26 1 3.1267 1.4436 -0.0843 27 1 1.6094 1.9801 -0.8448 28 1 1.7472 1.9314 0.9291 29 1 3.1300 -0.7209 1.2494 30 1 1.6767 -1.7489 1.2492 31 1 2.9450 -2.0122 3.0606 32 1 3.1241 -0.8203 -1.1945 33 1 1.5871 -1.7109 -1.3077 34 1 -0.2235 -0.8413 -2.2119 35 1 -0.2247 0.9434 -2.2011 36 1 -0.5898 -0.8224 -4.4720 37 1 -0.5528 0.9668 -4.4702 38 1 0.8384 -1.0908 -7.8965 39 1 3.3025 -0.2487 -3.7889 40 1 2.1786 -1.6383 -3.6371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833456922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:58 Heat of formation + Delta-G solvation = -136.037598 kcal Electronic energy + Delta-G solvation = -22176.580781 eV Core-core repulsion = 18712.750234 eV Total energy + Delta-G solvation = -3463.830548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.10983 -40.74526 -39.15991 -36.72871 -36.02516 -32.77781 -31.18541 -29.53883 -26.57160 -26.47565 -26.07314 -24.07029 -22.63802 -21.17479 -20.77852 -18.71793 -18.40744 -17.71196 -16.77088 -16.39238 -15.78896 -15.36020 -15.09901 -14.83484 -14.36631 -14.02544 -13.80666 -13.60527 -13.07782 -12.96826 -12.66271 -12.50219 -12.26834 -12.06881 -11.78655 -11.58297 -11.32394 -11.21988 -11.03297 -10.95720 -10.84007 -10.63323 -10.36954 -10.08100 -9.94947 -9.77168 -9.25501 -8.43175 -8.34008 -8.27847 -6.29501 -3.97441 1.55372 2.28373 3.46017 3.47791 3.66114 3.69969 3.95322 4.03465 4.24701 4.58524 4.64044 4.90357 4.99058 5.30346 5.41592 5.44690 5.46184 5.54371 5.66611 5.70999 5.75574 5.93204 5.95391 6.11793 6.21089 6.41426 6.55578 6.61126 6.78137 6.83067 6.98605 7.13182 7.22538 7.25165 7.31748 7.42759 7.58754 8.28710 8.52392 8.94687 9.72984 11.10318 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.044768 B = 0.003823 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.290867 B = 7322.455987 C = 7499.317055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C -0.115 4.115 4 C 0.021 3.979 5 C -0.588 4.588 6 H 0.054 0.946 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 1.065 2.935 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.056 3.944 14 N -0.503 5.503 15 C 0.030 3.970 16 C -0.147 4.147 17 C 0.133 3.867 18 F -0.170 7.170 19 C 0.474 3.526 20 O -0.493 6.493 21 O -0.503 6.503 22 C 0.028 3.972 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.036 0.964 26 H 0.038 0.962 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.006 0.994 30 H 0.003 0.997 31 H 0.267 0.733 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.414 0.586 39 H 0.102 0.898 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.288 2.623 -19.877 20.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.048 4.048 3 C -0.172 4.172 4 C -0.016 4.016 5 C -0.626 4.626 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.553 5.553 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.216 1.216 13 C -0.071 4.071 14 N -0.226 5.226 15 C -0.097 4.097 16 C -0.186 4.186 17 C 0.112 3.888 18 F -0.150 7.150 19 C 0.313 3.687 20 O -0.379 6.379 21 O -0.315 6.315 22 C -0.100 4.100 23 H 0.088 0.912 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.024 0.976 30 H 0.021 0.979 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.273 0.727 39 H 0.120 0.880 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.914 3.115 -17.777 18.704 hybrid contribution -0.187 -1.244 -2.430 2.736 sum -5.102 1.871 -20.207 20.925 Atomic orbital electron populations 1.22316 0.95909 0.99534 1.02558 1.20444 0.94961 0.96238 0.93203 1.21594 0.99637 0.95409 1.00562 1.19234 0.95454 0.94940 0.91998 1.22006 1.34511 1.14275 0.91809 0.92828 1.25780 0.95387 0.96569 1.01363 1.70777 1.32974 1.18213 1.33385 0.83593 0.75836 0.75366 0.75812 1.20944 1.21498 1.21577 1.22573 1.00884 0.94126 0.89548 1.64914 1.06865 1.49521 1.01348 1.23444 0.90301 1.03466 0.92531 1.23181 0.93306 1.04996 0.97082 1.21501 0.98997 0.78583 0.89686 1.92969 1.91308 1.37607 1.93121 1.23574 0.74873 0.86075 0.84172 1.90774 1.40290 1.23718 1.83115 1.84580 1.70667 1.53069 1.23181 1.23708 0.99382 0.99071 0.87866 0.91208 0.93147 0.94517 0.94252 0.93788 0.92313 0.97575 0.97882 0.92211 0.90815 0.94832 0.92038 0.88031 0.89568 0.88132 0.72695 0.88000 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 6.99 37.15 0.26 -2.39 16 2 C -0.05 -0.94 0.59 -154.51 -0.09 -1.03 16 3 C -0.11 -2.22 7.96 37.16 0.30 -1.92 16 4 C 0.02 0.52 3.35 -27.88 -0.09 0.43 16 5 C -0.59 -16.03 7.39 -34.44 -0.25 -16.28 16 6 H 0.05 1.43 5.79 -52.48 -0.30 1.13 16 7 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 8 N -0.92 -27.97 13.65 55.43 0.76 -27.22 16 9 Si 1.07 25.17 29.90 -169.99 -5.08 20.09 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.06 0.94 3.96 -3.83 -0.02 0.93 16 14 N -0.50 -7.25 4.34 -230.45 -1.00 -8.25 16 15 C 0.03 0.37 4.80 -2.75 -0.01 0.36 16 16 C -0.15 -1.49 6.31 -25.38 -0.16 -1.65 16 17 C 0.13 1.54 1.63 -89.91 -0.15 1.39 16 18 F -0.17 -2.21 16.96 2.25 0.04 -2.18 16 19 C 0.47 5.12 7.28 36.01 0.26 5.38 16 20 O -0.49 -6.43 16.46 -18.75 -0.31 -6.74 16 21 O -0.50 -4.00 13.42 -39.25 -0.53 -4.53 16 22 C 0.03 0.36 5.48 -1.89 -0.01 0.35 16 23 H 0.07 1.43 6.29 -51.93 -0.33 1.10 16 24 H 0.05 0.77 4.64 -51.93 -0.24 0.53 16 25 H 0.04 0.63 7.16 -51.93 -0.37 0.26 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.76 7.56 -51.93 -0.39 0.37 16 28 H 0.06 1.23 6.48 -51.93 -0.34 0.90 16 29 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 30 H 0.00 0.08 8.00 -51.93 -0.42 -0.34 16 31 H 0.27 8.15 7.22 -40.82 -0.29 7.85 16 32 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 33 H 0.03 0.56 7.79 -51.93 -0.40 0.16 16 34 H 0.06 0.78 6.11 -51.93 -0.32 0.46 16 35 H 0.10 1.27 5.95 -51.93 -0.31 0.96 16 36 H 0.09 0.74 7.84 -51.93 -0.41 0.34 16 37 H 0.10 0.90 8.12 -51.93 -0.42 0.48 16 38 H 0.41 1.30 9.10 45.56 0.41 1.71 16 39 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.08 0.99 7.25 -51.93 -0.38 0.62 16 LS Contribution 315.00 15.07 4.75 4.75 Total: -1.00 -32.12 315.00 -6.43 -38.54 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.98 Total: -0.28 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -0.06 Total: -14.18 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.24 Total: -35.47 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -0.84 Total: -11.27 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.12 -6.43 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833456922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.493 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds