Wall clock time and date at job start Mon Mar 30 2020 01:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47184 * 2 1 4 4 C 1.53002 * 109.47487 * 120.00109 * 2 1 3 5 5 C 1.50700 * 109.46935 * 299.99969 * 4 2 1 6 6 H 1.08007 * 120.00300 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00140 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99529 * 359.72723 * 7 5 4 9 9 Si 1.86799 * 120.00216 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47016 * 179.72407 * 9 7 5 11 11 H 1.48497 * 109.47246 * 299.72581 * 9 7 5 12 12 H 1.48500 * 109.46726 * 59.72624 * 9 7 5 13 13 C 1.52998 * 109.46988 * 240.00276 * 2 1 3 14 14 N 1.46898 * 109.47122 * 66.32666 * 13 2 1 15 15 C 1.47901 * 110.99959 * 292.30576 * 14 13 2 16 16 C 1.53999 * 107.05666 * 214.15773 * 15 14 13 17 17 C 1.54586 * 105.14128 * 1.22482 * 16 15 14 18 18 F 1.39902 * 110.72706 * 263.59772 * 17 16 15 19 19 C 1.50699 * 110.72396 * 140.49280 * 17 16 15 20 20 O 1.20828 * 119.99928 * 251.45195 * 19 17 16 21 21 O 1.34227 * 119.99975 * 71.45566 * 19 17 16 22 22 C 1.48536 * 110.99716 * 174.90901 * 14 13 2 23 23 H 1.09001 * 109.47057 * 286.06056 * 1 2 3 24 24 H 1.08996 * 109.47539 * 46.05563 * 1 2 3 25 25 H 1.09001 * 109.47303 * 166.06387 * 1 2 3 26 26 H 1.08999 * 109.47219 * 184.70386 * 3 2 1 27 27 H 1.09001 * 109.47396 * 304.70833 * 3 2 1 28 28 H 1.09001 * 109.47378 * 64.70789 * 3 2 1 29 29 H 1.09000 * 109.47456 * 180.02562 * 4 2 1 30 30 H 1.08997 * 109.46952 * 59.99551 * 4 2 1 31 31 H 0.97003 * 120.00593 * 0.26819 * 8 7 5 32 32 H 1.09005 * 109.47190 * 186.32413 * 13 2 1 33 33 H 1.08997 * 109.47199 * 306.32138 * 13 2 1 34 34 H 1.08997 * 109.91427 * 333.51109 * 15 14 13 35 35 H 1.08996 * 109.91550 * 94.60657 * 15 14 13 36 36 H 1.08997 * 110.30814 * 120.14337 * 16 15 14 37 37 H 1.09003 * 110.30696 * 242.30901 * 16 15 14 38 38 H 0.96703 * 117.00429 * 180.02562 * 21 19 17 39 39 H 1.08999 * 110.66863 * 278.15160 * 22 14 13 40 40 H 1.09000 * 110.66895 * 41.29200 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5377 -0.0109 2.4797 6 1 0.9164 0.8670 2.3807 7 6 1.8704 -0.4822 3.7320 8 7 2.6217 -1.5549 3.8526 9 14 1.2484 0.3988 5.2572 10 1 1.7374 -0.3056 6.4697 11 1 1.7499 1.7965 5.2607 12 1 -0.2366 0.4056 5.2538 13 6 2.0399 -0.7212 -1.2493 14 7 1.6788 0.0538 -2.4438 15 6 0.2147 0.0541 -2.6528 16 6 -0.0244 0.0606 -4.1741 17 6 1.3867 0.0321 -4.8048 18 9 1.8060 1.3243 -5.1386 19 6 1.4115 -0.8641 -6.0161 20 8 1.9858 -1.9262 -5.9702 21 8 0.7956 -0.4824 -7.1460 22 6 2.2626 -0.5520 -3.6679 23 1 -0.3633 0.2843 0.9876 24 1 -0.3634 0.7131 -0.7399 25 1 -0.3634 -0.9974 -0.2475 26 1 3.1267 1.4436 -0.0843 27 1 1.6094 1.9801 -0.8448 28 1 1.7472 1.9314 0.9291 29 1 3.1300 -0.7209 1.2494 30 1 1.6767 -1.7489 1.2492 31 1 2.9450 -2.0122 3.0606 32 1 3.1241 -0.8203 -1.1945 33 1 1.5871 -1.7109 -1.3077 34 1 -0.2235 -0.8413 -2.2119 35 1 -0.2247 0.9434 -2.2011 36 1 -0.5898 -0.8224 -4.4720 37 1 -0.5528 0.9668 -4.4702 38 1 0.8384 -1.0908 -7.8965 39 1 3.3025 -0.2487 -3.7889 40 1 2.1786 -1.6383 -3.6371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833456922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:57 Heat of formation + Delta-G solvation = -157.811816 kcal Electronic energy + Delta-G solvation = -22177.524982 eV Core-core repulsion = 18712.750234 eV Total energy + Delta-G solvation = -3464.774749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.05475 -41.59312 -40.35413 -37.74558 -37.24698 -34.73714 -32.40775 -30.58762 -28.47456 -27.93722 -27.41478 -25.38794 -24.28160 -22.27615 -21.65761 -20.07470 -19.44453 -18.61586 -18.43915 -17.74360 -16.82077 -16.41030 -16.14989 -16.00647 -15.57867 -15.41278 -15.30927 -15.04918 -14.46870 -14.34070 -13.84335 -13.73814 -13.51196 -13.27769 -13.13615 -12.84477 -12.81055 -12.55461 -12.44854 -12.29734 -12.22168 -12.03323 -11.93702 -11.61242 -11.52841 -11.38615 -10.96281 -10.47053 -10.41913 -9.50872 -8.58188 -6.26090 0.73410 1.51521 1.54514 1.62772 1.80799 2.60931 2.79058 2.92142 3.07165 3.24715 3.36713 3.89036 3.96120 4.04633 4.06181 4.11828 4.31599 4.44705 4.53664 4.58328 4.67419 4.68950 4.76957 4.88035 4.95704 4.98867 5.08532 5.18771 5.28597 5.36309 5.39859 5.50401 5.59308 5.71271 5.73996 5.90342 6.15066 6.29972 6.68802 6.69004 7.53453 8.81941 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.044768 B = 0.003823 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.290867 B = 7322.455987 C = 7499.317055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 C -0.105 4.105 4 C 0.024 3.976 5 C -0.588 4.588 6 H 0.060 0.940 7 C -0.045 4.045 8 N -0.947 5.947 9 Si 1.112 2.888 10 H -0.289 1.289 11 H -0.270 1.270 12 H -0.268 1.268 13 C 0.068 3.932 14 N -0.509 5.509 15 C 0.024 3.976 16 C -0.137 4.137 17 C 0.131 3.869 18 F -0.178 7.178 19 C 0.485 3.515 20 O -0.520 6.520 21 O -0.494 6.494 22 C 0.026 3.974 23 H 0.043 0.957 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.029 0.971 27 H 0.068 0.932 28 H 0.038 0.962 29 H -0.021 1.021 30 H -0.020 1.020 31 H 0.252 0.748 32 H 0.062 0.938 33 H 0.033 0.967 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.436 0.564 39 H 0.099 0.901 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.059 3.903 -21.533 22.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.046 4.046 3 C -0.162 4.162 4 C -0.013 4.013 5 C -0.626 4.626 6 H 0.078 0.922 7 C -0.241 4.241 8 N -0.586 5.586 9 Si 0.934 3.066 10 H -0.215 1.215 11 H -0.196 1.196 12 H -0.194 1.194 13 C -0.060 4.060 14 N -0.233 5.233 15 C -0.103 4.103 16 C -0.175 4.175 17 C 0.110 3.890 18 F -0.158 7.158 19 C 0.325 3.675 20 O -0.409 6.409 21 O -0.309 6.309 22 C -0.102 4.102 23 H 0.062 0.938 24 H 0.103 0.897 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.057 0.943 29 H -0.003 1.003 30 H -0.001 1.001 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.137 0.863 38 H 0.299 0.701 39 H 0.117 0.883 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.706 4.409 -19.491 21.079 hybrid contribution 0.374 -1.639 -2.030 2.635 sum -6.332 2.770 -21.521 22.603 Atomic orbital electron populations 1.22259 0.94323 1.00910 1.02069 1.20329 0.96210 0.96006 0.92087 1.21494 0.99146 0.95135 1.00472 1.19161 0.93680 0.94181 0.94283 1.22384 1.33517 1.14077 0.92643 0.92231 1.27293 0.95070 0.96576 1.05211 1.70916 1.35188 1.19865 1.32620 0.82991 0.76544 0.74996 0.72034 1.21522 1.19566 1.19364 1.22260 1.00086 0.93978 0.89699 1.64817 1.08562 1.48978 1.00929 1.23500 0.88729 1.03515 0.94555 1.23169 0.92564 1.06890 0.94904 1.21466 0.99437 0.78165 0.89902 1.92954 1.91498 1.38190 1.93206 1.23255 0.74475 0.85234 0.84565 1.90779 1.41640 1.24824 1.83647 1.84522 1.69589 1.53578 1.23168 1.23677 0.99644 0.99024 0.87845 0.93836 0.89749 0.93926 0.95180 0.91304 0.94289 1.00261 1.00144 0.93824 0.91943 0.94924 0.92076 0.87718 0.87659 0.86339 0.70065 0.88298 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 6.99 71.98 0.50 -4.34 16 2 C -0.05 -1.79 0.59 -52.18 -0.03 -1.82 16 3 C -0.11 -4.00 7.96 71.98 0.57 -3.42 16 4 C 0.02 1.25 3.35 29.85 0.10 1.35 16 5 C -0.59 -32.57 7.39 25.60 0.19 -32.38 16 6 H 0.06 3.18 5.79 -2.91 -0.02 3.17 16 7 C -0.05 -2.62 5.46 84.66 0.46 -2.16 16 8 N -0.95 -59.52 13.65 21.45 0.29 -59.23 16 9 Si 1.11 50.53 29.90 68.60 2.05 52.58 16 10 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 11 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 12 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 13 C 0.07 2.26 3.96 86.30 0.34 2.61 16 14 N -0.51 -13.86 4.34 -883.00 -3.83 -17.70 16 15 C 0.02 0.53 4.80 86.45 0.41 0.94 16 16 C -0.14 -2.30 6.31 31.47 0.20 -2.10 16 17 C 0.13 2.70 1.63 -10.33 -0.02 2.69 16 18 F -0.18 -4.21 16.96 44.97 0.76 -3.45 16 19 C 0.48 9.27 7.28 71.24 0.52 9.79 16 20 O -0.52 -12.70 16.46 21.96 0.36 -12.34 16 21 O -0.49 -6.26 13.42 -51.39 -0.69 -6.95 16 22 C 0.03 0.64 5.48 86.65 0.47 1.12 16 23 H 0.04 1.74 6.29 -2.39 -0.02 1.72 16 24 H 0.08 2.36 4.64 -2.39 -0.01 2.34 16 25 H 0.04 1.41 7.16 -2.39 -0.02 1.39 16 26 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 2.26 7.56 -2.39 -0.02 2.24 16 28 H 0.04 1.61 6.48 -2.39 -0.02 1.59 16 29 H -0.02 -1.17 8.01 -2.39 -0.02 -1.19 16 30 H -0.02 -1.09 8.00 -2.39 -0.02 -1.11 16 31 H 0.25 16.12 7.22 -92.71 -0.67 15.45 16 32 H 0.06 2.20 8.13 -2.38 -0.02 2.18 16 33 H 0.03 1.09 7.79 -2.39 -0.02 1.07 16 34 H 0.06 1.38 6.11 -2.39 -0.01 1.36 16 35 H 0.10 2.23 5.95 -2.39 -0.01 2.22 16 36 H 0.10 1.40 7.84 -2.39 -0.02 1.38 16 37 H 0.12 1.62 8.12 -2.39 -0.02 1.60 16 38 H 0.44 1.30 9.10 -74.05 -0.67 0.63 16 39 H 0.10 2.44 8.14 -2.39 -0.02 2.43 16 40 H 0.07 1.88 7.25 -2.39 -0.02 1.86 16 Total: -1.00 -70.36 315.00 3.16 -67.21 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.48 Total: 7.60 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 3.73 Total: -27.72 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -3.54 Total: -76.93 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.33 Total: -19.29 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.76 Total: -3.45 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Total: -70.36 3.16 -67.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833456922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.603 kcal (2) G-P(sol) polarization free energy of solvation -70.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds