Wall clock time and date at job start Mon Mar 30 2020 01:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 C 1.52999 * 109.46775 * 240.00481 * 2 1 3 5 5 C 1.50700 * 109.47298 * 59.99726 * 4 2 1 6 6 H 1.07997 * 120.00351 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00098 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00080 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00289 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47067 * 60.00113 * 9 7 5 11 11 H 1.48498 * 109.47221 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46900 * 300.00278 * 9 7 5 13 13 C 1.52999 * 109.47045 * 120.00482 * 2 1 3 14 14 N 1.46905 * 109.46553 * 177.26681 * 13 2 1 15 15 C 1.47906 * 111.00282 * 78.68039 * 14 13 2 16 16 C 1.53987 * 107.05749 * 145.84395 * 15 14 13 17 17 C 1.54594 * 105.14334 * 358.77322 * 16 15 14 18 18 F 1.39893 * 110.72673 * 96.40190 * 17 16 15 19 19 C 1.50698 * 110.72672 * 219.68959 * 17 16 15 20 20 O 1.20826 * 120.00445 * 113.54679 * 19 17 16 21 21 O 1.34233 * 119.99889 * 293.54533 * 19 17 16 22 22 C 1.48538 * 110.99867 * 196.07623 * 14 13 2 23 23 H 1.09006 * 109.46864 * 297.94906 * 1 2 3 24 24 H 1.08995 * 109.47290 * 57.95169 * 1 2 3 25 25 H 1.09005 * 109.46764 * 177.95199 * 1 2 3 26 26 H 1.08996 * 109.47453 * 191.06965 * 3 2 1 27 27 H 1.08998 * 109.47407 * 311.07567 * 3 2 1 28 28 H 1.09002 * 109.47035 * 71.07119 * 3 2 1 29 29 H 1.09004 * 109.47156 * 179.97438 * 4 2 1 30 30 H 1.08999 * 109.47311 * 299.99602 * 4 2 1 31 31 H 0.97001 * 120.00027 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.47100 * 57.26697 * 13 2 1 33 33 H 1.08993 * 109.47257 * 297.25900 * 13 2 1 34 34 H 1.08995 * 109.91328 * 26.48833 * 15 14 13 35 35 H 1.09000 * 110.07638 * 265.28813 * 15 14 13 36 36 H 1.09001 * 110.30777 * 239.85620 * 16 15 14 37 37 H 1.08997 * 110.39592 * 117.73782 * 16 15 14 38 38 H 0.96697 * 117.00042 * 179.97438 * 21 19 17 39 39 H 1.08999 * 110.66515 * 81.83839 * 22 14 13 40 40 H 1.09000 * 110.66488 * 318.71394 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5375 -0.0107 -2.4797 6 1 0.9163 0.8671 -2.3806 7 6 1.8710 -0.4814 -3.7320 8 7 2.6271 -1.5507 -3.8528 9 14 1.2488 0.3996 -5.2572 10 1 1.7439 1.7997 -5.2567 11 1 1.7447 -0.2997 -6.4697 12 1 -0.2362 0.3997 -5.2576 13 6 2.0400 -0.7214 1.2492 14 7 3.5076 -0.7787 1.2165 15 6 4.0979 0.5142 1.6255 16 6 5.4027 0.1968 2.3791 17 6 5.4938 -1.3463 2.3966 18 9 6.3035 -1.8064 1.3527 19 6 6.0067 -1.8353 3.7266 20 8 5.2851 -2.4754 4.4542 21 8 7.2654 -1.5595 4.1030 22 6 4.0226 -1.7827 2.1825 23 1 -0.3633 0.4817 0.9079 24 1 -0.3633 0.5453 -0.8710 25 1 -0.3633 -1.0271 -0.0367 26 1 3.1119 1.4489 -0.1973 27 1 1.5245 2.0101 -0.7747 28 1 1.8468 1.8961 0.9721 29 1 3.1300 -0.7208 -1.2496 30 1 1.6766 -1.7488 -1.2494 31 1 2.8620 -1.8816 -4.7339 32 1 1.6372 -1.7338 1.2739 33 1 1.7174 -0.1801 2.1385 34 1 3.4094 1.0454 2.2826 35 1 4.3149 1.1212 0.7466 36 1 5.3559 0.5846 3.3967 37 1 6.2581 0.6203 1.8526 38 1 7.5491 -1.8940 4.9648 39 1 3.9766 -2.7850 1.7568 40 1 3.4671 -1.7356 3.1191 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833456925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:01 Heat of formation + Delta-G solvation = -134.527226 kcal Electronic energy + Delta-G solvation = -22355.389896 eV Core-core repulsion = 18891.624843 eV Total energy + Delta-G solvation = -3463.765053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.88282 -40.60869 -38.89106 -36.59161 -35.88021 -32.40867 -31.13391 -29.32994 -27.03502 -26.41619 -25.81790 -23.70085 -22.66368 -21.16051 -20.61988 -18.53311 -18.08647 -17.51035 -16.66526 -16.14693 -15.49705 -15.10875 -14.91775 -14.56905 -14.48399 -14.19740 -13.70968 -13.28597 -12.89126 -12.74425 -12.38106 -12.23557 -12.12443 -11.94494 -11.88113 -11.60876 -11.27063 -11.14842 -10.91625 -10.83080 -10.73082 -10.60108 -10.29606 -10.20024 -10.09477 -9.58889 -8.93048 -8.72203 -8.22314 -8.02946 -5.83664 -3.83789 1.67894 2.42515 3.40023 3.45216 3.46674 3.86302 4.14004 4.22044 4.43820 4.57153 4.78104 5.06915 5.14585 5.43543 5.51387 5.53170 5.58682 5.69320 5.81007 5.86179 5.93250 6.01660 6.04387 6.18850 6.24310 6.38365 6.46362 6.74544 6.77378 7.00388 7.06352 7.22975 7.30425 7.43484 7.47643 7.89380 8.09907 8.26665 8.61639 9.23489 9.77852 11.27335 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026840 B = 0.004725 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.962915 B = 5925.061707 C = 6375.695840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.057 4.057 3 C -0.131 4.131 4 C 0.044 3.956 5 C -0.511 4.511 6 H 0.053 0.947 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.883 3.117 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.061 3.939 14 N -0.492 5.492 15 C 0.032 3.968 16 C -0.146 4.146 17 C 0.133 3.867 18 F -0.165 7.165 19 C 0.475 3.525 20 O -0.495 6.495 21 O -0.503 6.503 22 C 0.030 3.970 23 H 0.027 0.973 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.024 0.976 29 H 0.035 0.965 30 H 0.008 0.992 31 H 0.258 0.742 32 H 0.070 0.930 33 H 0.027 0.973 34 H 0.052 0.948 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.412 0.588 39 H 0.104 0.896 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.906 2.760 16.480 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.058 4.058 3 C -0.188 4.188 4 C 0.007 3.993 5 C -0.549 4.549 6 H 0.071 0.929 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.711 3.289 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.205 1.205 13 C -0.067 4.067 14 N -0.216 5.216 15 C -0.095 4.095 16 C -0.184 4.184 17 C 0.112 3.888 18 F -0.146 7.146 19 C 0.315 3.685 20 O -0.381 6.381 21 O -0.315 6.315 22 C -0.098 4.098 23 H 0.046 0.954 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.027 0.973 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.271 0.729 39 H 0.122 0.878 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.810 2.470 15.599 16.828 hybrid contribution -0.274 0.297 0.414 0.578 sum 5.535 2.767 16.012 17.167 Atomic orbital electron populations 1.21737 0.95681 1.00987 1.00019 1.20603 0.94150 0.95203 0.95826 1.22021 1.01797 0.96304 0.98714 1.19039 0.97461 0.94130 0.88675 1.21292 1.30659 1.11858 0.91092 0.92852 1.24982 0.95517 0.95122 0.98778 1.69973 1.37171 1.23118 1.23108 0.86821 0.79059 0.79845 0.83175 1.20484 1.21524 1.20532 1.22504 0.85487 1.00877 0.97787 1.64825 1.08617 1.03296 1.44839 1.23309 0.93242 0.93396 0.99600 1.23140 1.01695 0.90973 1.02605 1.21466 0.91081 0.96923 0.79303 1.92999 1.73933 1.89914 1.57708 1.23642 0.79739 0.76359 0.88807 1.90753 1.57385 1.35820 1.54159 1.84593 1.30694 1.73652 1.42524 1.23700 0.89478 0.99536 0.97080 0.95386 0.91629 0.93580 0.92041 0.92592 0.95709 0.94676 0.97336 0.93263 0.91119 0.95467 0.92946 0.87915 0.89785 0.88096 0.72851 0.87824 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.16 37.16 0.30 -2.03 16 2 C -0.06 -1.12 0.60 -154.51 -0.09 -1.21 16 3 C -0.13 -2.37 6.70 37.16 0.25 -2.12 16 4 C 0.04 1.11 3.83 -27.88 -0.11 1.00 16 5 C -0.51 -13.99 7.78 -34.44 -0.27 -14.26 16 6 H 0.05 1.42 5.74 -52.49 -0.30 1.12 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 9 Si 0.88 21.77 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.06 1.02 4.02 -3.82 -0.02 1.01 16 14 N -0.49 -8.09 4.31 -230.45 -0.99 -9.09 16 15 C 0.03 0.44 4.95 -2.76 -0.01 0.42 16 16 C -0.15 -1.67 6.31 -25.38 -0.16 -1.83 16 17 C 0.13 1.78 1.64 -89.91 -0.15 1.63 16 18 F -0.17 -2.63 16.96 2.25 0.04 -2.60 16 19 C 0.48 5.67 7.28 36.00 0.26 5.93 16 20 O -0.49 -6.85 16.48 -18.75 -0.31 -7.15 16 21 O -0.50 -4.52 13.42 -39.27 -0.53 -5.05 16 22 C 0.03 0.44 5.34 -1.89 -0.01 0.43 16 23 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 1.30 6.69 -51.93 -0.35 0.95 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.06 1.13 5.22 -51.93 -0.27 0.86 16 27 H 0.06 1.08 6.99 -51.93 -0.36 0.72 16 28 H 0.02 0.37 7.58 -51.93 -0.39 -0.02 16 29 H 0.03 0.97 7.53 -51.93 -0.39 0.57 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.07 1.19 8.00 -51.93 -0.42 0.78 16 33 H 0.03 0.40 7.55 -51.93 -0.39 0.01 16 34 H 0.05 0.65 6.86 -51.93 -0.36 0.29 16 35 H 0.10 1.51 5.80 -51.93 -0.30 1.21 16 36 H 0.08 0.78 7.84 -51.93 -0.41 0.37 16 37 H 0.10 1.09 8.12 -51.93 -0.42 0.67 16 38 H 0.41 1.64 9.10 45.56 0.41 2.06 16 39 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.07 0.96 7.32 -51.93 -0.38 0.58 16 LS Contribution 318.61 15.07 4.80 4.80 Total: -1.00 -32.51 318.61 -6.52 -39.03 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -5.15 Total: -0.79 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -0.10 Total: -9.51 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.26 Total: -35.48 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.84 Total: -12.20 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.60 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.51 -6.52 -39.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833456925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.493 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds