Wall clock time and date at job start Mon Mar 30 2020 01:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 C 1.52999 * 109.46775 * 240.00481 * 2 1 3 5 5 C 1.50700 * 109.47298 * 59.99726 * 4 2 1 6 6 H 1.07997 * 120.00351 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00098 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00080 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00289 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47067 * 60.00113 * 9 7 5 11 11 H 1.48498 * 109.47221 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46900 * 300.00278 * 9 7 5 13 13 C 1.52999 * 109.47045 * 120.00482 * 2 1 3 14 14 N 1.46905 * 109.46553 * 177.26681 * 13 2 1 15 15 C 1.47906 * 111.00282 * 78.68039 * 14 13 2 16 16 C 1.53987 * 107.05749 * 145.84395 * 15 14 13 17 17 C 1.54594 * 105.14334 * 358.77322 * 16 15 14 18 18 F 1.39893 * 110.72673 * 96.40190 * 17 16 15 19 19 C 1.50698 * 110.72672 * 219.68959 * 17 16 15 20 20 O 1.20826 * 120.00445 * 113.54679 * 19 17 16 21 21 O 1.34233 * 119.99889 * 293.54533 * 19 17 16 22 22 C 1.48538 * 110.99867 * 196.07623 * 14 13 2 23 23 H 1.09006 * 109.46864 * 297.94906 * 1 2 3 24 24 H 1.08995 * 109.47290 * 57.95169 * 1 2 3 25 25 H 1.09005 * 109.46764 * 177.95199 * 1 2 3 26 26 H 1.08996 * 109.47453 * 191.06965 * 3 2 1 27 27 H 1.08998 * 109.47407 * 311.07567 * 3 2 1 28 28 H 1.09002 * 109.47035 * 71.07119 * 3 2 1 29 29 H 1.09004 * 109.47156 * 179.97438 * 4 2 1 30 30 H 1.08999 * 109.47311 * 299.99602 * 4 2 1 31 31 H 0.97001 * 120.00027 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.47100 * 57.26697 * 13 2 1 33 33 H 1.08993 * 109.47257 * 297.25900 * 13 2 1 34 34 H 1.08995 * 109.91328 * 26.48833 * 15 14 13 35 35 H 1.09000 * 110.07638 * 265.28813 * 15 14 13 36 36 H 1.09001 * 110.30777 * 239.85620 * 16 15 14 37 37 H 1.08997 * 110.39592 * 117.73782 * 16 15 14 38 38 H 0.96697 * 117.00042 * 179.97438 * 21 19 17 39 39 H 1.08999 * 110.66515 * 81.83839 * 22 14 13 40 40 H 1.09000 * 110.66488 * 318.71394 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5375 -0.0107 -2.4797 6 1 0.9163 0.8671 -2.3806 7 6 1.8710 -0.4814 -3.7320 8 7 2.6271 -1.5507 -3.8528 9 14 1.2488 0.3996 -5.2572 10 1 1.7439 1.7997 -5.2567 11 1 1.7447 -0.2997 -6.4697 12 1 -0.2362 0.3997 -5.2576 13 6 2.0400 -0.7214 1.2492 14 7 3.5076 -0.7787 1.2165 15 6 4.0979 0.5142 1.6255 16 6 5.4027 0.1968 2.3791 17 6 5.4938 -1.3463 2.3966 18 9 6.3035 -1.8064 1.3527 19 6 6.0067 -1.8353 3.7266 20 8 5.2851 -2.4754 4.4542 21 8 7.2654 -1.5595 4.1030 22 6 4.0226 -1.7827 2.1825 23 1 -0.3633 0.4817 0.9079 24 1 -0.3633 0.5453 -0.8710 25 1 -0.3633 -1.0271 -0.0367 26 1 3.1119 1.4489 -0.1973 27 1 1.5245 2.0101 -0.7747 28 1 1.8468 1.8961 0.9721 29 1 3.1300 -0.7208 -1.2496 30 1 1.6766 -1.7488 -1.2494 31 1 2.8620 -1.8816 -4.7339 32 1 1.6372 -1.7338 1.2739 33 1 1.7174 -0.1801 2.1385 34 1 3.4094 1.0454 2.2826 35 1 4.3149 1.1212 0.7466 36 1 5.3559 0.5846 3.3967 37 1 6.2581 0.6203 1.8526 38 1 7.5491 -1.8940 4.9648 39 1 3.9766 -2.7850 1.7568 40 1 3.4671 -1.7356 3.1191 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833456925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:00 Heat of formation + Delta-G solvation = -156.872852 kcal Electronic energy + Delta-G solvation = -22356.358875 eV Core-core repulsion = 18891.624843 eV Total energy + Delta-G solvation = -3464.734032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.03194 -41.54250 -40.11998 -37.60519 -37.17813 -34.45386 -32.38965 -30.42518 -29.04229 -27.82726 -27.08170 -25.06869 -24.36233 -22.28432 -21.61880 -19.66798 -19.34824 -18.56553 -18.26753 -17.70489 -16.65109 -16.37351 -16.24939 -15.98263 -15.77729 -15.27973 -15.13922 -14.67346 -14.31006 -14.20616 -13.81437 -13.56557 -13.47702 -13.30359 -12.85902 -12.81566 -12.76159 -12.66374 -12.54551 -12.27716 -12.20811 -12.12078 -11.91987 -11.67366 -11.57021 -11.18793 -10.68702 -10.67395 -10.40097 -9.24945 -8.04329 -6.11168 0.75687 1.42596 1.44698 1.51815 1.55731 2.48898 2.84354 3.06739 3.15226 3.28899 3.43728 3.94286 4.07939 4.14284 4.16997 4.25879 4.44776 4.51627 4.62089 4.66680 4.70488 4.79933 4.86821 4.96505 4.99336 5.06986 5.22628 5.30090 5.30397 5.54326 5.61289 5.69659 5.76281 5.90912 6.02171 6.09199 6.19567 6.47110 6.72453 7.07859 7.55341 9.07157 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026840 B = 0.004725 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.962915 B = 5925.061707 C = 6375.695840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.057 4.057 3 C -0.124 4.124 4 C 0.057 3.943 5 C -0.515 4.515 6 H 0.062 0.938 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.291 1.291 12 H -0.270 1.270 13 C 0.068 3.932 14 N -0.526 5.526 15 C 0.030 3.970 16 C -0.136 4.136 17 C 0.123 3.877 18 F -0.186 7.186 19 C 0.489 3.511 20 O -0.516 6.516 21 O -0.495 6.495 22 C 0.033 3.967 23 H 0.065 0.935 24 H 0.046 0.954 25 H 0.036 0.964 26 H 0.053 0.947 27 H 0.038 0.962 28 H 0.062 0.938 29 H 0.003 0.997 30 H -0.031 1.031 31 H 0.256 0.744 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.436 0.564 39 H 0.084 0.916 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.712 4.691 18.295 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.057 4.057 3 C -0.181 4.181 4 C 0.020 3.980 5 C -0.553 4.553 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.776 3.224 10 H -0.193 1.193 11 H -0.217 1.217 12 H -0.195 1.195 13 C -0.060 4.060 14 N -0.251 5.251 15 C -0.097 4.097 16 C -0.174 4.174 17 C 0.102 3.898 18 F -0.166 7.166 19 C 0.329 3.671 20 O -0.405 6.405 21 O -0.309 6.309 22 C -0.095 4.095 23 H 0.084 0.916 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.021 0.979 30 H -0.013 1.013 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.300 0.700 39 H 0.102 0.898 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.629 4.420 17.440 18.852 hybrid contribution -0.157 -0.336 -0.117 0.389 sum 5.472 4.084 17.323 18.621 Atomic orbital electron populations 1.21668 0.94695 1.00612 1.01014 1.20511 0.94986 0.95883 0.94366 1.21934 1.01004 0.94935 1.00237 1.18818 0.95253 0.92571 0.91407 1.21727 1.29843 1.11781 0.91970 0.92003 1.25876 0.95883 0.95913 1.02361 1.70138 1.39011 1.25046 1.23672 0.85731 0.78837 0.78874 0.78957 1.19328 1.21655 1.19466 1.22335 0.86018 1.00309 0.97294 1.64672 1.08512 1.05207 1.46667 1.23312 0.94632 0.92074 0.99649 1.23135 1.00717 0.89332 1.04177 1.21602 0.90142 0.98366 0.79652 1.92954 1.74432 1.90322 1.58938 1.23131 0.80335 0.75793 0.87856 1.90755 1.58220 1.36835 1.54674 1.84532 1.28853 1.73221 1.44268 1.23601 0.90714 0.98209 0.96995 0.91649 0.93474 0.94470 0.92796 0.94263 0.91933 0.97909 1.01262 0.93490 0.92195 0.92304 0.90796 0.89467 0.86664 0.87522 0.70049 0.89764 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.35 8.16 71.98 0.59 -3.76 16 2 C -0.06 -2.19 0.60 -52.18 -0.03 -2.23 16 3 C -0.12 -4.28 6.70 71.98 0.48 -3.79 16 4 C 0.06 2.96 3.83 29.85 0.11 3.07 16 5 C -0.51 -28.77 7.78 25.60 0.20 -28.57 16 6 H 0.06 3.29 5.74 -2.91 -0.02 3.27 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -58.90 13.29 21.45 0.28 -58.61 16 9 Si 0.95 45.18 29.54 68.60 2.03 47.21 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 C 0.07 2.20 4.02 86.30 0.35 2.55 16 14 N -0.53 -17.12 4.31 -883.02 -3.81 -20.93 16 15 C 0.03 0.77 4.95 86.44 0.43 1.20 16 16 C -0.14 -2.79 6.31 31.47 0.20 -2.59 16 17 C 0.12 3.15 1.64 -10.34 -0.02 3.13 16 18 F -0.19 -5.97 16.96 44.97 0.76 -5.21 16 19 C 0.49 10.71 7.28 71.24 0.52 11.23 16 20 O -0.52 -13.38 16.48 21.97 0.36 -13.02 16 21 O -0.49 -7.52 13.42 -51.44 -0.69 -8.21 16 22 C 0.03 0.94 5.34 86.65 0.46 1.41 16 23 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 24 H 0.05 1.82 6.69 -2.39 -0.02 1.81 16 25 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.05 1.94 5.22 -2.39 -0.01 1.93 16 27 H 0.04 1.45 6.99 -2.39 -0.02 1.44 16 28 H 0.06 1.67 7.58 -2.39 -0.02 1.66 16 29 H 0.00 0.15 7.53 -2.38 -0.02 0.13 16 30 H -0.03 -1.84 8.14 -2.39 -0.02 -1.86 16 31 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.06 2.03 8.00 -2.39 -0.02 2.01 16 33 H 0.06 1.54 7.55 -2.39 -0.02 1.52 16 34 H 0.07 1.55 6.86 -2.39 -0.02 1.53 16 35 H 0.09 2.48 5.80 -2.39 -0.01 2.47 16 36 H 0.12 1.66 7.84 -2.39 -0.02 1.64 16 37 H 0.11 2.09 8.12 -2.39 -0.02 2.07 16 38 H 0.44 2.10 9.10 -74.06 -0.67 1.43 16 39 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.09 2.19 7.32 -2.39 -0.02 2.17 16 Total: -1.00 -72.51 318.61 3.07 -69.45 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 0.38 Total: 7.45 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 3.75 Total: -18.12 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -3.52 Total: -79.54 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.33 Total: -21.23 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.76 Total: -5.21 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -72.51 3.07 -69.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833456925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.426 kcal (2) G-P(sol) polarization free energy of solvation -72.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds