Wall clock time and date at job start Mon Mar 30 2020 01:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47148 * 2 1 4 4 C 1.38321 * 119.91904 * 89.99464 * 3 2 1 5 5 C 1.38063 * 120.08197 * 180.02562 * 4 3 2 6 6 C 1.39032 * 119.91709 * 359.97438 * 5 4 3 7 7 N 1.39532 * 120.07985 * 180.02562 * 6 5 4 8 8 C 1.46503 * 119.99966 * 56.83715 * 7 6 5 9 9 C 1.53006 * 109.46956 * 89.99504 * 8 7 6 10 10 C 1.52999 * 117.51436 * 116.28419 * 9 8 7 11 11 C 1.52997 * 117.49338 * 184.91042 * 9 8 7 12 12 C 1.34775 * 120.00082 * 236.83133 * 7 6 5 13 13 O 1.21740 * 120.00037 * 5.66407 * 12 7 6 14 14 C 1.46173 * 119.99977 * 185.66979 * 12 7 6 15 15 H 1.07989 * 120.00059 * 359.97438 * 14 12 7 16 16 C 1.40122 * 119.99777 * 179.97438 * 14 12 7 17 17 N 1.30638 * 120.00129 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99997 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47180 * 90.00299 * 18 16 14 20 20 H 1.48501 * 109.47470 * 210.00436 * 18 16 14 21 21 H 1.48503 * 109.47258 * 330.00067 * 18 16 14 22 22 C 1.39024 * 119.83290 * 0.28158 * 6 5 4 23 23 C 1.38066 * 119.91376 * 359.46550 * 22 6 5 24 24 H 1.08997 * 109.47333 * 300.00827 * 1 2 3 25 25 H 1.09008 * 109.46956 * 60.00534 * 1 2 3 26 26 H 1.09001 * 109.47249 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.46855 * 239.99279 * 2 1 3 28 28 H 1.09004 * 109.46496 * 119.99392 * 2 1 3 29 29 H 1.08002 * 119.96280 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.04392 * 179.97438 * 5 4 3 31 31 H 1.09003 * 109.46959 * 329.99806 * 8 7 6 32 32 H 1.09003 * 109.46690 * 209.99257 * 8 7 6 33 33 H 1.08993 * 115.54814 * 330.58120 * 9 8 7 34 34 H 1.09002 * 117.49894 * 214.96430 * 10 9 8 35 35 H 1.08997 * 117.50065 * 359.97438 * 10 9 8 36 36 H 1.09001 * 117.50442 * 359.97438 * 11 9 8 37 37 H 1.09006 * 117.49302 * 144.99822 * 11 9 8 38 38 H 0.97007 * 120.00215 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.04148 * 179.71937 * 22 6 5 40 40 H 1.07998 * 119.95646 * 180.23121 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0713 1.1989 5 6 2.7220 3.3731 1.2028 6 6 2.9543 4.0301 -0.0003 7 7 3.4195 5.3456 -0.0003 8 6 4.6649 5.6822 0.6939 9 6 5.8426 5.5362 -0.2720 10 6 6.6361 6.7985 -0.6150 11 6 7.2498 5.7328 0.2952 12 6 2.7230 6.3066 -0.6389 13 8 1.6380 6.0494 -1.1273 14 6 3.2706 7.6577 -0.7453 15 1 4.2329 7.8860 -0.3118 16 6 2.5467 8.6567 -1.4098 17 7 1.3823 8.3807 -1.9338 18 14 3.2461 10.3835 -1.5451 19 1 4.0566 10.4936 -2.7846 20 1 2.1335 11.3660 -1.5923 21 1 4.1042 10.6639 -0.3660 22 6 2.7171 3.3748 -1.2032 23 6 2.2623 2.0711 -1.1991 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.0811 1.5605 2.1331 30 1 2.9008 3.8806 2.1392 31 1 4.8030 5.0085 1.5396 32 1 4.6145 6.7103 1.0525 33 1 5.7162 4.7919 -1.0582 34 1 7.0320 6.8847 -1.6269 35 1 6.3190 7.7334 -0.1529 36 1 7.3368 5.9667 1.3563 37 1 8.0494 5.1179 -0.1179 38 1 0.8810 9.0723 -2.3934 39 1 2.8921 3.8834 -2.1397 40 1 2.0813 1.5602 -2.1331 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836837434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:43 Heat of formation + Delta-G solvation = 6.122625 kcal Electronic energy + Delta-G solvation = -20942.753624 eV Core-core repulsion = 17915.856831 eV Total energy + Delta-G solvation = -3026.896793 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.44728 -37.71023 -36.43919 -34.35494 -32.65519 -32.43003 -30.37677 -28.62772 -26.39307 -25.84219 -23.30049 -22.19501 -21.95198 -20.92632 -20.20666 -19.26446 -16.78928 -16.27364 -15.68168 -15.16942 -15.10052 -14.57223 -14.15657 -13.82094 -13.73935 -13.36788 -13.14193 -12.83093 -12.55652 -12.21812 -12.09313 -11.88258 -11.45334 -11.24714 -11.20609 -11.11804 -10.99286 -10.91809 -10.64012 -10.44550 -10.33947 -10.22628 -9.94749 -9.46020 -8.93651 -8.44528 -8.35758 -7.67177 -7.05730 -6.26673 -4.71181 1.92569 2.00277 3.09453 3.16669 3.19118 3.98868 4.16692 4.29038 4.47125 4.52783 5.08220 5.13549 5.19200 5.36511 5.43832 5.50007 5.51751 5.54306 5.71961 5.75913 5.90701 5.92957 5.95791 5.98013 6.02335 6.07803 6.25717 6.30715 6.32644 6.33823 6.40421 6.51370 6.62242 6.74309 6.88135 7.11648 7.15842 7.38800 7.41430 7.66660 8.15079 8.39314 8.94812 9.26651 10.49197 10.67532 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018738 B = 0.005679 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.946750 B = 4929.252659 C = 6031.961031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.117 4.117 4 C -0.107 4.107 5 C -0.147 4.147 6 C 0.190 3.810 7 N -0.596 5.596 8 C 0.158 3.842 9 C -0.154 4.154 10 C -0.167 4.167 11 C -0.190 4.190 12 C 0.553 3.447 13 O -0.563 6.563 14 C -0.533 4.533 15 H 0.077 0.923 16 C 0.087 3.913 17 N -0.763 5.763 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.264 1.264 22 C -0.113 4.113 23 C -0.105 4.105 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.269 0.731 39 H 0.119 0.881 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.370 -9.555 4.670 12.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.118 4.118 4 C -0.125 4.125 5 C -0.168 4.168 6 C 0.096 3.904 7 N -0.326 5.326 8 C 0.035 3.965 9 C -0.174 4.174 10 C -0.204 4.204 11 C -0.227 4.227 12 C 0.360 3.640 13 O -0.444 6.444 14 C -0.569 4.569 15 H 0.095 0.905 16 C -0.133 4.133 17 N -0.392 5.392 18 Si 0.729 3.271 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.188 1.188 22 C -0.134 4.134 23 C -0.124 4.124 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.137 0.863 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.584 -9.540 4.289 11.857 hybrid contribution 0.400 0.978 -0.162 1.069 sum 5.984 -8.562 4.127 11.232 Atomic orbital electron populations 1.21761 0.95282 1.00927 1.02437 1.20415 0.95791 0.93189 1.01932 1.19663 1.02713 0.96184 0.93247 1.20672 1.00446 0.94488 0.96939 1.21130 1.02777 0.95585 0.97297 1.17777 0.94628 0.85620 0.92395 1.45986 1.24062 1.05041 1.57513 1.20876 0.82024 1.01316 0.92318 1.22772 0.91694 1.00695 1.02245 1.22936 1.03577 0.93983 0.99888 1.22933 0.96404 1.04084 0.99296 1.18364 0.83874 0.84302 0.77429 1.90660 1.21713 1.81765 1.50264 1.20978 1.05636 0.92734 1.37529 0.90473 1.25751 0.94048 1.00028 0.93506 1.70004 1.10312 1.33584 1.25280 0.86411 0.79247 0.82007 0.79425 1.19627 1.20430 1.18762 1.21229 1.00538 0.93601 0.98009 1.20783 0.99998 0.94574 0.97011 0.92645 0.92512 0.93016 0.91664 0.91722 0.86895 0.86645 0.92233 0.89686 0.88321 0.89441 0.88466 0.89207 0.89559 0.91987 0.86325 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.89 37.16 0.37 -1.33 16 2 C -0.08 -0.92 6.06 -27.88 -0.17 -1.09 16 3 C -0.12 -1.84 5.14 -104.56 -0.54 -2.38 16 4 C -0.11 -1.71 9.69 -39.62 -0.38 -2.09 16 5 C -0.15 -2.72 9.32 -39.35 -0.37 -3.08 16 6 C 0.19 4.06 5.16 -83.77 -0.43 3.63 16 7 N -0.60 -13.61 2.57 -115.09 -0.30 -13.91 16 8 C 0.16 2.95 5.22 -4.04 -0.02 2.93 16 9 C -0.15 -2.62 5.99 -90.62 -0.54 -3.16 16 10 C -0.17 -2.63 9.53 -26.73 -0.25 -2.89 16 11 C -0.19 -2.57 10.25 -26.73 -0.27 -2.85 16 12 C 0.55 15.45 7.38 -13.08 -0.10 15.35 16 13 O -0.56 -18.06 14.39 5.15 0.07 -17.99 16 14 C -0.53 -14.37 8.68 -35.69 -0.31 -14.68 16 15 H 0.08 1.88 4.54 -52.49 -0.24 1.64 16 16 C 0.09 2.36 5.50 -17.35 -0.10 2.26 16 17 N -0.76 -22.44 11.82 55.55 0.66 -21.79 16 18 Si 0.90 19.61 29.56 -169.99 -5.02 14.58 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 22 C -0.11 -2.37 8.94 -39.35 -0.35 -2.72 16 23 C -0.10 -1.83 9.69 -39.61 -0.38 -2.22 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 28 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.12 1.96 7.83 -52.49 -0.41 1.55 16 31 H 0.06 0.97 7.35 -51.93 -0.38 0.59 16 32 H 0.08 1.63 6.09 -51.93 -0.32 1.31 16 33 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 34 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.10 1.58 7.16 -51.93 -0.37 1.21 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 39 H 0.12 2.68 8.05 -52.49 -0.42 2.26 16 40 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -32.53 334.68 -9.32 -41.85 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.92 Total: 6.54 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -3.85 Total: -14.33 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.36 Total: -35.70 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.07 Total: -17.99 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.53 -9.32 -41.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836837434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.972 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds