Wall clock time and date at job start Mon Mar 30 2020 01:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46796 * 2 1 4 4 C 1.50706 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99884 * 91.20487 * 4 3 2 6 6 C 1.33008 * 120.00032 * 271.20849 * 4 3 2 7 7 C 1.47066 * 120.00111 * 7.93573 * 6 4 3 8 8 O 1.21629 * 119.99891 * 6.90232 * 7 6 4 9 9 N 1.34773 * 120.00307 * 186.90160 * 7 6 4 10 10 C 1.39838 * 120.00643 * 175.68762 * 9 7 6 11 11 C 1.39323 * 119.94694 * 323.34666 * 10 9 7 12 12 C 1.38484 * 120.42521 * 179.75980 * 11 10 9 13 13 C 1.37692 * 120.32328 * 0.51555 * 12 11 10 14 14 C 1.40747 * 119.88903 * 359.74047 * 13 12 11 15 15 C 1.41404 * 120.20358 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00491 * 29.48304 * 15 14 13 17 17 C 1.39937 * 119.99499 * 209.48665 * 15 14 13 18 18 N 1.30826 * 120.00119 * 9.36203 * 17 15 14 19 19 Si 1.86799 * 120.00020 * 189.36661 * 17 15 14 20 20 H 1.48503 * 109.47024 * 59.99875 * 19 17 15 21 21 H 1.48494 * 109.47249 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46973 * 300.00097 * 19 17 15 23 23 C 1.38266 * 119.95547 * 143.61713 * 10 9 7 24 24 H 1.09000 * 109.47091 * 60.00594 * 1 2 3 25 25 H 1.08997 * 109.47108 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47452 * 300.00120 * 1 2 3 27 27 H 1.09000 * 109.47452 * 239.99880 * 2 1 3 28 28 H 1.09000 * 109.47091 * 119.99406 * 2 1 3 29 29 H 1.09000 * 109.47218 * 59.99737 * 3 2 1 30 30 H 1.09004 * 109.47315 * 299.99601 * 3 2 1 31 31 H 1.08997 * 109.47558 * 270.00699 * 5 4 3 32 32 H 1.09006 * 109.47048 * 30.00435 * 5 4 3 33 33 H 1.08999 * 109.47336 * 149.99907 * 5 4 3 34 34 H 1.08005 * 120.00248 * 188.21141 * 6 4 3 35 35 H 0.97005 * 120.00076 * 355.68764 * 9 7 6 36 36 H 1.07996 * 119.78295 * 359.97438 * 11 10 9 37 37 H 1.07996 * 119.83961 * 180.25621 * 12 11 10 38 38 H 1.07997 * 120.05009 * 179.76751 * 13 12 11 39 39 H 0.97003 * 120.00314 * 180.02562 * 18 17 15 40 40 H 1.08003 * 120.16022 * 359.96034 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.3010 1.4699 -1.3039 6 6 4.2115 1.4186 1.1525 7 6 3.4863 1.2162 2.4158 8 8 2.3005 0.9461 2.3997 9 7 4.1355 1.3299 3.5914 10 6 3.4287 1.2270 4.7935 11 6 2.1417 1.7517 4.8908 12 6 1.4308 1.6509 6.0749 13 6 1.9929 1.0396 7.1733 14 6 3.2942 0.5095 7.0916 15 6 3.8777 -0.1201 8.2153 16 1 3.2520 -0.6208 8.9392 17 6 5.2659 -0.0942 8.3892 18 7 6.0076 0.6613 7.6207 19 14 6.0602 -1.1386 9.7188 20 1 5.7563 -2.5709 9.4707 21 1 7.5307 -0.9332 9.6972 22 1 5.5249 -0.7417 11.0459 23 6 4.0100 0.6095 5.8856 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 4.4828 0.4492 -1.6400 32 1 3.7122 1.9996 -2.0529 33 1 5.2533 1.9810 -1.1625 34 1 5.2833 1.5521 1.1606 35 1 5.0933 1.4833 3.6036 36 1 1.6944 2.2372 4.0361 37 1 0.4323 2.0573 6.1385 38 1 1.4360 0.9667 8.0957 39 1 6.9699 0.6790 7.7410 40 1 5.0090 0.2056 5.8124 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837072499.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:42 Heat of formation + Delta-G solvation = -31.412849 kcal Electronic energy + Delta-G solvation = -20480.138704 eV Core-core repulsion = 17451.614251 eV Total energy + Delta-G solvation = -3028.524453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28056 -39.24668 -37.28318 -35.76920 -35.03395 -33.81451 -31.46956 -30.59190 -28.55381 -27.68458 -27.15000 -23.61266 -23.04721 -22.51022 -21.42392 -19.71962 -19.20066 -17.95852 -17.53604 -16.62690 -16.50814 -16.24726 -15.89337 -15.42656 -14.93360 -14.58934 -14.52599 -14.31343 -14.12125 -13.81140 -13.49925 -13.38659 -13.14730 -12.95803 -12.80349 -12.71067 -12.56060 -12.31138 -12.07084 -11.92128 -11.74310 -11.60845 -11.44928 -11.08450 -10.70791 -10.38282 -10.00440 -9.27712 -8.81002 -8.48392 -6.37641 0.35203 0.98421 1.08409 1.40030 1.50977 1.54261 2.23401 2.37006 2.42092 2.81272 3.70071 3.80966 3.86482 4.17969 4.28968 4.39446 4.47532 4.57692 4.60405 4.71216 4.82049 4.82848 4.85623 4.98074 5.03957 5.06677 5.13113 5.17254 5.22258 5.25788 5.36772 5.43947 5.48525 5.54166 5.73114 5.85070 5.90319 6.02840 6.10293 6.36433 6.62775 6.80948 6.95530 6.99061 7.40805 8.39673 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.024982 B = 0.004187 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.536500 B = 6685.886984 C = 7301.791136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.097 4.097 4 C -0.019 4.019 5 C -0.121 4.121 6 C -0.244 4.244 7 C 0.526 3.474 8 O -0.548 6.548 9 N -0.664 5.664 10 C 0.151 3.849 11 C -0.230 4.230 12 C -0.088 4.088 13 C -0.245 4.245 14 C 0.090 3.910 15 C -0.502 4.502 16 H 0.075 0.925 17 C 0.035 3.965 18 N -0.832 5.832 19 Si 0.984 3.016 20 H -0.263 1.263 21 H -0.266 1.266 22 H -0.262 1.262 23 C -0.197 4.197 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.035 0.965 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.151 0.849 35 H 0.413 0.587 36 H 0.103 0.897 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.287 0.713 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 1.159 -15.694 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C -0.134 4.134 4 C -0.021 4.021 5 C -0.177 4.177 6 C -0.265 4.265 7 C 0.319 3.681 8 O -0.428 6.428 9 N -0.309 5.309 10 C 0.058 3.942 11 C -0.251 4.251 12 C -0.107 4.107 13 C -0.264 4.264 14 C 0.088 3.912 15 C -0.532 4.532 16 H 0.093 0.907 17 C -0.179 4.179 18 N -0.459 5.459 19 Si 0.805 3.195 20 H -0.187 1.187 21 H -0.190 1.190 22 H -0.186 1.186 23 C -0.218 4.218 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.169 0.831 35 H 0.249 0.751 36 H 0.121 0.879 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.122 1.072 -15.791 15.828 hybrid contribution 0.775 -0.228 1.126 1.386 sum 0.898 0.844 -14.665 14.717 Atomic orbital electron populations 1.21676 0.95560 1.01474 1.01355 1.21262 0.96137 0.95721 1.00923 1.20998 0.91403 0.98287 1.02712 1.22881 0.96215 0.87481 0.95508 1.21062 1.00277 1.03980 0.92353 1.22417 1.01277 1.12315 0.90442 1.19362 0.87239 0.76711 0.84763 1.90740 1.16644 1.47835 1.87571 1.43450 1.12013 1.71303 1.04085 1.17686 0.92995 0.97913 0.85646 1.20474 0.95938 1.10422 0.98256 1.20736 0.98687 0.98618 0.92655 1.21262 0.98407 1.08323 0.98450 1.17779 0.91512 0.89502 0.92435 1.19763 0.92986 1.32865 1.07623 0.90710 1.26688 0.97385 0.94746 0.99056 1.69825 1.07473 1.31790 1.36821 0.85221 0.77315 0.78853 0.78082 1.18738 1.19048 1.18598 1.21117 1.01980 1.06367 0.92363 0.91298 0.92725 0.94625 0.91219 0.94088 0.91524 0.89886 0.89047 0.89615 0.89771 0.83122 0.75098 0.87936 0.86266 0.88058 0.90280 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.10 -2.67 5.39 30.59 0.17 -2.50 16 3 C -0.10 -2.41 4.62 29.85 0.14 -2.27 16 4 C -0.02 -0.42 5.36 -17.61 -0.09 -0.51 16 5 C -0.12 -1.56 10.05 71.24 0.72 -0.85 16 6 C -0.24 -6.34 9.63 23.42 0.23 -6.11 16 7 C 0.53 19.26 7.32 86.56 0.63 19.89 16 8 O -0.55 -22.98 9.18 -4.12 -0.04 -23.01 16 9 N -0.66 -26.26 5.32 -306.92 -1.63 -27.89 16 10 C 0.15 7.37 6.21 38.13 0.24 7.61 16 11 C -0.23 -11.23 8.66 22.59 0.20 -11.03 16 12 C -0.09 -4.23 10.02 22.20 0.22 -4.01 16 13 C -0.24 -12.67 9.79 22.75 0.22 -12.44 16 14 C 0.09 5.06 5.55 -21.31 -0.12 4.94 16 15 C -0.50 -27.67 9.06 23.46 0.21 -27.45 16 16 H 0.07 3.97 7.86 -2.91 -0.02 3.95 16 17 C 0.03 1.76 5.27 85.25 0.45 2.21 16 18 N -0.83 -43.12 10.82 21.82 0.24 -42.89 16 19 Si 0.98 38.55 29.57 68.60 2.03 40.58 16 20 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 21 H -0.27 -9.76 7.11 99.48 0.71 -9.06 16 22 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 23 C -0.20 -10.56 8.57 22.85 0.20 -10.36 16 24 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.04 1.37 6.46 -2.39 -0.02 1.35 16 29 H 0.07 2.14 5.89 -2.39 -0.01 2.13 16 30 H 0.08 1.60 8.02 -2.39 -0.02 1.58 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 0.87 8.03 -2.38 -0.02 0.85 16 33 H 0.08 0.89 8.06 -2.39 -0.02 0.87 16 34 H 0.15 3.00 8.04 -2.91 -0.02 2.97 16 35 H 0.41 13.98 8.81 -92.70 -0.82 13.17 16 36 H 0.10 4.89 6.61 -2.91 -0.02 4.87 16 37 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 38 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 39 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 40 H 0.11 6.20 6.22 -2.91 -0.02 6.18 16 Total: -1.00 -65.25 330.72 4.93 -60.32 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: 0.22 Total: 38.55 kcal Atomic # 6 Polarization: -49.78 SS G_CDS: 4.11 Total: -45.66 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -1.40 Total: -70.77 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.04 Total: -23.01 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -65.25 4.93 -60.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837072499.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.911 kcal (2) G-P(sol) polarization free energy of solvation -65.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds