Wall clock time and date at job start Mon Mar 30 2020 01:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47266 * 2 1 4 4 C 1.50699 * 119.99275 * 273.91839 * 3 2 1 5 5 C 1.33011 * 120.00269 * 93.91989 * 3 2 1 6 6 C 1.50703 * 120.00007 * 2.64135 * 5 3 2 7 7 C 1.47063 * 119.99993 * 182.64769 * 5 3 2 8 8 O 1.21620 * 120.00090 * 5.80690 * 7 5 3 9 9 N 1.34780 * 120.00030 * 185.81129 * 7 5 3 10 10 C 1.39840 * 119.99933 * 184.39166 * 9 7 5 11 11 C 1.39316 * 119.95083 * 144.31202 * 10 9 7 12 12 C 1.38483 * 120.42705 * 180.02562 * 11 10 9 13 13 C 1.37685 * 120.32675 * 359.97438 * 12 11 10 14 14 C 1.40746 * 119.88533 * 0.02562 * 13 12 11 15 15 C 1.41416 * 120.20490 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99984 * 145.40536 * 15 14 13 17 17 C 1.39926 * 119.99834 * 325.41087 * 15 14 13 18 18 N 1.30828 * 120.00606 * 358.13506 * 17 15 14 19 19 Si 1.86801 * 119.99643 * 178.14060 * 17 15 14 20 20 H 1.48501 * 109.47398 * 89.99766 * 19 17 15 21 21 H 1.48500 * 109.47127 * 209.99409 * 19 17 15 22 22 H 1.48494 * 109.47212 * 329.99522 * 19 17 15 23 23 C 1.38272 * 119.95079 * 324.03814 * 10 9 7 24 24 H 1.09002 * 109.46371 * 60.00618 * 1 2 3 25 25 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46966 * 300.00313 * 1 2 3 27 27 H 1.09000 * 109.47483 * 239.99156 * 2 1 3 28 28 H 1.09005 * 109.46875 * 119.99380 * 2 1 3 29 29 H 1.08998 * 109.46832 * 240.06121 * 4 3 2 30 30 H 1.08993 * 109.47462 * 0.06726 * 4 3 2 31 31 H 1.09004 * 109.46923 * 120.06688 * 4 3 2 32 32 H 1.09003 * 109.46909 * 204.88597 * 6 5 3 33 33 H 1.08998 * 109.47461 * 324.88905 * 6 5 3 34 34 H 1.08998 * 109.46861 * 84.88619 * 6 5 3 35 35 H 0.97004 * 119.99876 * 4.38987 * 9 7 5 36 36 H 1.08000 * 119.78256 * 0.02562 * 11 10 9 37 37 H 1.07997 * 119.83317 * 179.97438 * 12 11 10 38 38 H 1.07992 * 120.05467 * 179.97438 * 13 12 11 39 39 H 0.96996 * 120.00442 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.16096 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1994 2.1608 -1.3021 5 6 2.3283 2.0217 1.1492 6 6 2.2182 1.2627 2.4465 7 6 2.7629 3.4266 1.1538 8 8 2.7507 4.0703 0.1220 9 7 3.1747 4.0009 2.3015 10 6 3.5004 5.3606 2.3254 11 6 3.2091 6.1259 3.4525 12 6 3.5268 7.4733 3.4866 13 6 4.1350 8.0718 2.4060 14 6 4.4354 7.3113 1.2604 15 6 5.0595 7.9192 0.1465 16 1 5.7666 7.3599 -0.4481 17 6 4.7610 9.2454 -0.1852 18 7 3.8775 9.9114 0.5129 19 14 5.6241 10.0649 -1.6250 20 1 4.8400 9.8391 -2.8658 21 1 5.7370 11.5234 -1.3695 22 1 6.9812 9.4837 -1.7845 23 6 4.1161 5.9423 1.2325 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.2419 2.4560 -1.4211 30 1 1.9088 1.5123 -2.1285 31 1 1.5683 3.0496 -1.2985 32 1 2.0591 1.9642 3.2654 33 1 1.3779 0.5706 2.3924 34 1 3.1381 0.7043 2.6199 35 1 3.2452 3.4709 3.1109 36 1 2.7325 5.6652 4.3052 37 1 3.2963 8.0576 4.3651 38 1 4.3804 9.1230 2.4372 39 1 3.6708 10.8309 0.2831 40 1 4.3467 5.3489 0.3601 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837074071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:52 Heat of formation + Delta-G solvation = -15.151064 kcal Electronic energy + Delta-G solvation = -20552.939150 eV Core-core repulsion = 17525.119861 eV Total energy + Delta-G solvation = -3027.819290 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.92430 -37.59517 -36.29843 -34.42016 -33.03910 -31.60475 -29.87295 -29.71983 -27.95355 -25.23764 -24.88105 -24.20110 -21.83182 -20.85895 -19.83460 -18.21683 -17.32659 -16.08696 -15.61178 -15.26448 -14.96618 -14.69862 -14.48492 -14.08760 -13.63673 -13.26444 -12.99306 -12.83337 -12.73706 -12.54414 -12.31861 -12.09741 -11.94544 -11.64688 -11.48398 -11.39053 -11.15678 -11.07032 -10.94336 -10.55974 -10.44529 -10.01727 -9.72022 -9.24837 -9.00486 -8.74053 -8.67665 -7.31462 -6.82306 -6.54565 -4.30456 1.51564 2.82063 2.98458 3.14805 3.19797 3.24828 3.71731 3.80668 4.06003 4.70838 4.76946 4.78466 5.01623 5.06890 5.16321 5.42400 5.46543 5.53449 5.65876 5.70564 5.73313 5.85399 5.90771 6.01495 6.07561 6.24118 6.29521 6.41071 6.63719 6.69248 6.87422 7.07958 7.12356 7.15677 7.35553 7.64151 7.79710 8.01563 8.16977 8.25714 8.34866 8.72619 8.83696 9.02885 9.04554 10.39256 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022759 B = 0.004487 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.987918 B = 6238.825900 C = 7188.448818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.044 4.044 4 C -0.114 4.114 5 C -0.195 4.195 6 C -0.115 4.115 7 C 0.540 3.460 8 O -0.513 6.513 9 N -0.666 5.666 10 C 0.143 3.857 11 C -0.251 4.251 12 C -0.099 4.099 13 C -0.159 4.159 14 C 0.116 3.884 15 C -0.463 4.463 16 H 0.075 0.925 17 C 0.072 3.928 18 N -0.813 5.813 19 Si 0.913 3.087 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.199 4.199 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.397 0.603 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.122 0.878 39 H 0.277 0.723 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.951 -15.708 1.831 16.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.133 4.133 3 C -0.045 4.045 4 C -0.170 4.170 5 C -0.199 4.199 6 C -0.171 4.171 7 C 0.330 3.670 8 O -0.390 6.390 9 N -0.310 5.310 10 C 0.052 3.948 11 C -0.273 4.273 12 C -0.118 4.118 13 C -0.179 4.179 14 C 0.114 3.886 15 C -0.494 4.494 16 H 0.093 0.907 17 C -0.143 4.143 18 N -0.440 5.440 19 Si 0.738 3.262 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.220 4.220 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.231 0.769 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.139 0.861 39 H 0.088 0.912 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.092 -15.036 1.093 15.621 hybrid contribution 0.210 0.228 -0.119 0.332 sum -3.882 -14.808 0.975 15.339 Atomic orbital electron populations 1.21691 0.94354 1.01685 1.02597 1.20757 0.96478 0.92966 1.03061 1.22327 0.92136 0.95025 0.95041 1.21004 1.03845 0.99759 0.92436 1.21240 1.08274 0.94302 0.96036 1.20793 1.02263 0.99735 0.94354 1.18360 0.77963 0.86928 0.83795 1.90828 1.52734 1.64220 1.31256 1.43377 1.66046 1.09694 1.11914 1.17475 0.99378 0.81427 0.96567 1.20129 1.13962 0.94748 0.98416 1.20507 0.99944 0.93467 0.97858 1.21453 1.03738 1.00598 0.92113 1.17548 0.89017 0.90161 0.91917 1.19486 1.22904 0.96287 1.10685 0.90723 1.25825 0.93913 0.96999 0.97526 1.69770 1.26592 1.10736 1.36884 0.86242 0.80445 0.78258 0.81260 1.19604 1.20333 1.18716 1.21212 1.05902 0.96758 0.98121 0.92278 0.92316 0.92382 0.90752 0.90634 0.90370 0.93329 0.89353 0.91809 0.91163 0.91248 0.76855 0.89315 0.89005 0.86054 0.91234 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.81 37.16 0.36 -0.86 16 2 C -0.10 -0.87 5.37 -27.88 -0.15 -1.02 16 3 C -0.04 -0.56 5.37 -101.16 -0.54 -1.10 16 4 C -0.11 -1.63 8.35 36.01 0.30 -1.33 16 5 C -0.20 -2.74 6.00 -102.86 -0.62 -3.36 16 6 C -0.11 -1.16 8.61 36.01 0.31 -0.85 16 7 C 0.54 10.20 7.52 -12.68 -0.10 10.10 16 8 O -0.51 -11.66 10.63 5.26 0.06 -11.61 16 9 N -0.67 -12.48 5.22 -10.99 -0.06 -12.54 16 10 C 0.14 3.34 6.28 -83.79 -0.53 2.81 16 11 C -0.25 -5.65 9.97 -39.09 -0.39 -6.04 16 12 C -0.10 -2.35 10.02 -39.69 -0.40 -2.75 16 13 C -0.16 -4.26 8.63 -38.84 -0.34 -4.60 16 14 C 0.12 3.27 5.52 -106.85 -0.59 2.68 16 15 C -0.46 -13.01 9.04 -37.74 -0.34 -13.35 16 16 H 0.07 2.04 7.85 -52.49 -0.41 1.63 16 17 C 0.07 1.92 5.36 -17.35 -0.09 1.82 16 18 N -0.81 -22.10 10.82 55.55 0.60 -21.50 16 19 Si 0.91 19.86 29.56 -169.99 -5.02 14.84 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 23 C -0.20 -5.26 8.42 -38.68 -0.33 -5.59 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.51 7.81 -51.93 -0.41 0.11 16 27 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 28 H 0.08 0.60 6.35 -51.93 -0.33 0.27 16 29 H 0.08 1.25 7.55 -51.93 -0.39 0.85 16 30 H 0.05 0.56 7.99 -51.93 -0.41 0.14 16 31 H 0.09 1.48 6.90 -51.93 -0.36 1.12 16 32 H 0.06 0.63 6.76 -51.93 -0.35 0.28 16 33 H 0.07 0.60 6.28 -51.93 -0.33 0.27 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.40 5.89 7.03 -40.82 -0.29 5.60 16 36 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.12 3.34 6.35 -52.49 -0.33 3.01 16 39 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 40 H 0.11 3.04 6.28 -52.49 -0.33 2.71 16 LS Contribution 325.90 15.07 4.91 4.91 Total: -1.00 -31.14 325.90 -8.55 -39.69 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.61 Total: 9.63 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -3.43 Total: -23.43 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.54 Total: -34.03 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.06 Total: -11.61 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.14 -8.55 -39.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837074071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.536 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds