Wall clock time and date at job start Mon Mar 30 2020 01:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47266 * 2 1 4 4 C 1.50699 * 119.99275 * 273.91839 * 3 2 1 5 5 C 1.33011 * 120.00269 * 93.91989 * 3 2 1 6 6 C 1.50703 * 120.00007 * 2.64135 * 5 3 2 7 7 C 1.47063 * 119.99993 * 182.64769 * 5 3 2 8 8 O 1.21620 * 120.00090 * 5.80690 * 7 5 3 9 9 N 1.34780 * 120.00030 * 185.81129 * 7 5 3 10 10 C 1.39840 * 119.99933 * 184.39166 * 9 7 5 11 11 C 1.39316 * 119.95083 * 144.31202 * 10 9 7 12 12 C 1.38483 * 120.42705 * 180.02562 * 11 10 9 13 13 C 1.37685 * 120.32675 * 359.97438 * 12 11 10 14 14 C 1.40746 * 119.88533 * 0.02562 * 13 12 11 15 15 C 1.41416 * 120.20490 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99984 * 145.40536 * 15 14 13 17 17 C 1.39926 * 119.99834 * 325.41087 * 15 14 13 18 18 N 1.30828 * 120.00606 * 358.13506 * 17 15 14 19 19 Si 1.86801 * 119.99643 * 178.14060 * 17 15 14 20 20 H 1.48501 * 109.47398 * 89.99766 * 19 17 15 21 21 H 1.48500 * 109.47127 * 209.99409 * 19 17 15 22 22 H 1.48494 * 109.47212 * 329.99522 * 19 17 15 23 23 C 1.38272 * 119.95079 * 324.03814 * 10 9 7 24 24 H 1.09002 * 109.46371 * 60.00618 * 1 2 3 25 25 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46966 * 300.00313 * 1 2 3 27 27 H 1.09000 * 109.47483 * 239.99156 * 2 1 3 28 28 H 1.09005 * 109.46875 * 119.99380 * 2 1 3 29 29 H 1.08998 * 109.46832 * 240.06121 * 4 3 2 30 30 H 1.08993 * 109.47462 * 0.06726 * 4 3 2 31 31 H 1.09004 * 109.46923 * 120.06688 * 4 3 2 32 32 H 1.09003 * 109.46909 * 204.88597 * 6 5 3 33 33 H 1.08998 * 109.47461 * 324.88905 * 6 5 3 34 34 H 1.08998 * 109.46861 * 84.88619 * 6 5 3 35 35 H 0.97004 * 119.99876 * 4.38987 * 9 7 5 36 36 H 1.08000 * 119.78256 * 0.02562 * 11 10 9 37 37 H 1.07997 * 119.83317 * 179.97438 * 12 11 10 38 38 H 1.07992 * 120.05467 * 179.97438 * 13 12 11 39 39 H 0.96996 * 120.00442 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.16096 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1994 2.1608 -1.3021 5 6 2.3283 2.0217 1.1492 6 6 2.2182 1.2627 2.4465 7 6 2.7629 3.4266 1.1538 8 8 2.7507 4.0703 0.1220 9 7 3.1747 4.0009 2.3015 10 6 3.5004 5.3606 2.3254 11 6 3.2091 6.1259 3.4525 12 6 3.5268 7.4733 3.4866 13 6 4.1350 8.0718 2.4060 14 6 4.4354 7.3113 1.2604 15 6 5.0595 7.9192 0.1465 16 1 5.7666 7.3599 -0.4481 17 6 4.7610 9.2454 -0.1852 18 7 3.8775 9.9114 0.5129 19 14 5.6241 10.0649 -1.6250 20 1 4.8400 9.8391 -2.8658 21 1 5.7370 11.5234 -1.3695 22 1 6.9812 9.4837 -1.7845 23 6 4.1161 5.9423 1.2325 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.2419 2.4560 -1.4211 30 1 1.9088 1.5123 -2.1285 31 1 1.5683 3.0496 -1.2985 32 1 2.0591 1.9642 3.2654 33 1 1.3779 0.5706 2.3924 34 1 3.1381 0.7043 2.6199 35 1 3.2452 3.4709 3.1109 36 1 2.7325 5.6652 4.3052 37 1 3.2963 8.0576 4.3651 38 1 4.3804 9.1230 2.4372 39 1 3.6708 10.8309 0.2831 40 1 4.3467 5.3489 0.3601 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837074071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:52 Heat of formation + Delta-G solvation = -32.846095 kcal Electronic energy + Delta-G solvation = -20553.706464 eV Core-core repulsion = 17525.119861 eV Total energy + Delta-G solvation = -3028.586604 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.44076 -39.27754 -37.56605 -36.19127 -34.88957 -32.56573 -31.74605 -30.91336 -29.67905 -27.25389 -25.94569 -25.19457 -23.35278 -22.75053 -21.46113 -19.77353 -19.01211 -17.45422 -17.29310 -16.88447 -16.49542 -16.32663 -15.82739 -15.19180 -15.12447 -14.78560 -14.53057 -14.20660 -13.89968 -13.74720 -13.63883 -13.46449 -13.20048 -13.01400 -12.88380 -12.84567 -12.53794 -12.46049 -12.23371 -12.22307 -11.92188 -11.66181 -11.60908 -11.14354 -10.81607 -10.35811 -9.77629 -9.31864 -8.70564 -8.53182 -6.41802 0.31658 0.94817 1.06644 1.34463 1.47200 1.48931 2.20927 2.27926 2.33543 2.78038 3.67215 3.71722 3.86868 4.05381 4.24519 4.45009 4.45861 4.56552 4.59795 4.71385 4.75434 4.78055 4.88193 4.97977 5.04391 5.09126 5.10852 5.13629 5.15851 5.21683 5.23011 5.34001 5.39702 5.57027 5.68277 5.81312 5.87290 6.04903 6.12681 6.36099 6.67467 6.70384 6.94714 6.99971 7.36535 8.41839 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022759 B = 0.004487 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.987918 B = 6238.825900 C = 7188.448818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.033 4.033 4 C -0.115 4.115 5 C -0.208 4.208 6 C -0.110 4.110 7 C 0.529 3.471 8 O -0.562 6.562 9 N -0.656 5.656 10 C 0.149 3.851 11 C -0.239 4.239 12 C -0.097 4.097 13 C -0.184 4.184 14 C 0.085 3.915 15 C -0.506 4.506 16 H 0.064 0.936 17 C 0.030 3.970 18 N -0.842 5.842 19 Si 0.986 3.014 20 H -0.268 1.268 21 H -0.260 1.260 22 H -0.259 1.259 23 C -0.225 4.225 24 H 0.048 0.952 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.418 0.582 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.285 0.715 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.934 -18.049 3.121 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.035 4.035 4 C -0.171 4.171 5 C -0.211 4.211 6 C -0.166 4.166 7 C 0.321 3.679 8 O -0.443 6.443 9 N -0.302 5.302 10 C 0.055 3.945 11 C -0.260 4.260 12 C -0.115 4.115 13 C -0.204 4.204 14 C 0.083 3.917 15 C -0.537 4.537 16 H 0.082 0.918 17 C -0.182 4.182 18 N -0.470 5.470 19 Si 0.807 3.193 20 H -0.193 1.193 21 H -0.184 1.184 22 H -0.183 1.183 23 C -0.246 4.246 24 H 0.067 0.933 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.257 0.743 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.124 0.876 39 H 0.095 0.905 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.082 -17.422 2.435 18.311 hybrid contribution 0.440 0.840 -0.489 1.067 sum -4.642 -16.582 1.946 17.329 Atomic orbital electron populations 1.21703 0.93510 1.03059 1.01984 1.20851 0.96922 0.90027 1.04907 1.22675 0.90383 0.96853 0.93593 1.20923 1.01640 0.99449 0.95066 1.21286 1.09389 0.91736 0.98679 1.20863 1.04156 0.99830 0.91779 1.19327 0.76905 0.88818 0.82826 1.90824 1.54617 1.65891 1.32932 1.43295 1.65643 1.08112 1.13194 1.17587 0.97552 0.83647 0.95691 1.20568 1.12190 0.94166 0.99074 1.20884 0.98340 0.94455 0.97848 1.21404 1.05847 1.00024 0.93117 1.17876 0.90002 0.91171 0.92693 1.19709 1.24375 0.97855 1.11800 0.91801 1.26692 0.94299 0.96898 1.00275 1.69833 1.27463 1.11324 1.38394 0.85152 0.79113 0.77781 0.77253 1.19338 1.18425 1.18323 1.21158 1.07993 0.96507 0.98975 0.93254 0.89916 0.92765 0.89321 0.88440 0.92906 0.90409 0.92497 0.91441 0.88850 0.89453 0.74279 0.84898 0.85681 0.87637 0.90463 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.81 71.98 0.71 -1.24 16 2 C -0.09 -1.32 5.37 29.85 0.16 -1.16 16 3 C -0.03 -0.80 5.37 -17.61 -0.09 -0.90 16 4 C -0.11 -3.35 8.35 71.24 0.59 -2.75 16 5 C -0.21 -5.52 6.00 -18.71 -0.11 -5.63 16 6 C -0.11 -1.82 8.61 71.24 0.61 -1.20 16 7 C 0.53 20.20 7.52 86.56 0.65 20.85 16 8 O -0.56 -27.07 10.63 -4.09 -0.04 -27.12 16 9 N -0.66 -24.10 5.22 -306.92 -1.60 -25.71 16 10 C 0.15 6.94 6.28 38.13 0.24 7.18 16 11 C -0.24 -10.30 9.97 22.59 0.23 -10.07 16 12 C -0.10 -4.51 10.02 22.20 0.22 -4.29 16 13 C -0.18 -10.18 8.63 22.75 0.20 -9.99 16 14 C 0.09 5.05 5.52 -21.31 -0.12 4.93 16 15 C -0.51 -30.32 9.04 23.46 0.21 -30.10 16 16 H 0.06 3.77 7.85 -2.91 -0.02 3.75 16 17 C 0.03 1.66 5.36 85.25 0.46 2.12 16 18 N -0.84 -47.45 10.82 21.82 0.24 -47.21 16 19 Si 0.99 42.03 29.56 68.60 2.03 44.06 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 23 C -0.22 -12.55 8.42 22.86 0.19 -12.35 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 25 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.78 7.81 -2.39 -0.02 0.76 16 27 H 0.09 1.11 8.12 -2.39 -0.02 1.09 16 28 H 0.10 1.07 6.35 -2.38 -0.02 1.06 16 29 H 0.05 1.80 7.55 -2.39 -0.02 1.78 16 30 H 0.08 1.74 7.99 -2.39 -0.02 1.72 16 31 H 0.06 2.03 6.90 -2.38 -0.02 2.01 16 32 H 0.07 1.07 6.76 -2.39 -0.02 1.05 16 33 H 0.09 1.14 6.28 -2.39 -0.02 1.13 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.42 11.42 7.03 -92.71 -0.65 10.77 16 36 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 37 H 0.13 4.94 8.06 -2.91 -0.02 4.91 16 38 H 0.11 6.08 6.35 -2.91 -0.02 6.06 16 39 H 0.28 14.51 8.30 -92.71 -0.77 13.74 16 40 H 0.09 5.27 6.28 -2.91 -0.02 5.25 16 Total: -1.00 -73.65 325.90 5.16 -68.49 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.40 Total: 32.09 kcal Atomic # 6 Polarization: -48.75 SS G_CDS: 4.15 Total: -44.60 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -1.37 Total: -72.92 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.04 Total: -27.12 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -73.65 5.16 -68.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837074071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.648 kcal (2) G-P(sol) polarization free energy of solvation -73.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds