Wall clock time and date at job start Mon Mar 30 2020 01:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47213 * 2 1 4 4 C 1.53496 * 114.20940 * 174.99751 * 3 2 1 5 5 N 1.47070 * 87.98202 * 139.85300 * 4 3 2 6 6 C 1.34780 * 136.05343 * 152.85076 * 5 4 3 7 7 O 1.21279 * 119.99962 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99810 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.47105 * 179.97438 * 8 6 5 10 10 C 1.37634 * 120.12947 * 265.00368 * 9 8 6 11 11 C 1.38617 * 120.24891 * 179.97438 * 10 9 8 12 12 C 1.38659 * 120.50129 * 359.97438 * 11 10 9 13 13 C 1.37600 * 120.24526 * 0.02562 * 12 11 10 14 14 C 1.40699 * 120.12658 * 85.25608 * 9 8 6 15 15 C 1.41401 * 120.24067 * 0.02562 * 14 9 8 16 16 H 1.07990 * 120.00395 * 330.00553 * 15 14 9 17 17 C 1.39950 * 119.99504 * 150.01031 * 15 14 9 18 18 N 1.30821 * 119.99760 * 162.08641 * 17 15 14 19 19 Si 1.86805 * 120.00101 * 342.07895 * 17 15 14 20 20 H 1.48498 * 109.46722 * 95.39543 * 19 17 15 21 21 H 1.48501 * 109.47136 * 215.39649 * 19 17 15 22 22 H 1.48503 * 109.47111 * 335.39326 * 19 17 15 23 23 C 1.47070 * 87.88527 * 333.10218 * 5 4 3 24 24 H 1.08999 * 109.47041 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47105 * 300.00170 * 1 2 3 26 26 H 1.08999 * 109.47367 * 59.99796 * 1 2 3 27 27 H 1.08996 * 109.47182 * 240.00299 * 2 1 3 28 28 H 1.08995 * 109.47429 * 119.99708 * 2 1 3 29 29 H 1.09004 * 113.28197 * 41.93403 * 3 2 1 30 30 H 1.09000 * 113.46253 * 25.07184 * 4 3 2 31 31 H 1.08999 * 113.52303 * 254.64631 * 4 3 2 32 32 H 1.09005 * 109.46891 * 59.99815 * 8 6 5 33 33 H 1.08996 * 109.47321 * 300.00207 * 8 6 5 34 34 H 1.08004 * 119.87814 * 0.02562 * 10 9 8 35 35 H 1.08002 * 119.75395 * 179.97438 * 11 10 9 36 36 H 1.07995 * 119.87739 * 180.02562 * 12 11 10 37 37 H 1.08000 * 120.12345 * 179.97438 * 13 12 11 38 38 H 0.97003 * 119.99982 * 179.97438 * 18 17 15 39 39 H 1.08997 * 113.46070 * 141.67891 * 23 5 4 40 40 H 1.08994 * 113.46721 * 272.11485 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5647 1.5711 0.1221 5 7 3.5001 2.6583 -0.8663 6 6 4.2342 3.7506 -1.1567 7 8 5.2243 4.0067 -0.5048 8 6 3.8247 4.6538 -2.2914 9 6 4.8044 5.7932 -2.4051 10 6 4.5405 6.9953 -1.7888 11 6 5.4402 8.0449 -1.8914 12 6 6.6144 7.8972 -2.6138 13 6 6.8988 6.7044 -3.2381 14 6 5.9898 5.6341 -3.1462 15 6 6.2686 4.4056 -3.7884 16 1 5.8981 3.4814 -3.3704 17 6 7.0248 4.3876 -4.9659 18 7 7.5792 3.2737 -5.3702 19 14 7.2424 5.9539 -5.9604 20 1 8.5198 6.6084 -5.5796 21 1 7.2684 5.6218 -7.4075 22 1 6.1119 6.8764 -5.6845 23 6 2.2783 2.0324 -1.3940 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.4814 2.0970 0.6691 30 1 4.1041 0.6930 -0.2331 31 1 3.8961 1.8991 1.1073 32 1 2.8277 5.0500 -2.0987 33 1 3.8166 4.0868 -3.2223 34 1 3.6295 7.1210 -1.2225 35 1 5.2249 8.9848 -1.4049 36 1 7.3084 8.7215 -2.6868 37 1 7.8138 6.5918 -3.8007 38 1 8.1030 3.2611 -6.1865 39 1 1.5172 2.7523 -1.6951 40 1 2.4716 1.2786 -2.1572 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837260159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:35 Heat of formation + Delta-G solvation = 7.437203 kcal Electronic energy + Delta-G solvation = -20725.135578 eV Core-core repulsion = 17698.295789 eV Total energy + Delta-G solvation = -3026.839789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.18269 -38.29000 -36.99055 -33.54415 -33.38363 -31.81319 -30.28170 -28.95641 -26.67683 -25.83371 -24.79361 -23.40972 -21.35293 -20.61243 -19.79792 -18.48140 -17.30172 -16.51028 -15.83138 -15.72675 -15.15931 -14.76976 -14.24895 -14.20924 -13.86006 -13.64749 -13.26304 -12.71814 -12.61975 -12.48285 -12.21399 -12.10388 -11.91286 -11.72534 -11.38426 -11.18896 -11.03978 -11.00853 -10.76587 -10.68646 -10.34196 -10.20132 -9.66690 -9.52264 -9.13026 -9.08068 -8.33051 -7.54983 -7.45334 -6.89297 -4.43178 2.58850 2.76199 3.15427 3.18165 3.28264 3.35563 3.41255 4.02675 4.22167 4.55103 4.71775 4.85552 5.04331 5.16691 5.21718 5.42099 5.51876 5.54316 5.58409 5.61421 5.74185 5.79766 5.83459 5.90657 5.95120 6.01008 6.13480 6.22119 6.26521 6.32993 6.38293 6.64112 6.77265 6.99943 7.25524 7.48405 7.71253 7.79618 7.95459 8.16252 8.20654 8.40691 8.73377 8.85787 8.86996 10.13074 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.005042 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.659538 B = 5551.992472 C = 6381.114774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.127 4.127 4 C 0.106 3.894 5 N -0.657 5.657 6 C 0.546 3.454 7 O -0.520 6.520 8 C -0.065 4.065 9 C -0.167 4.167 10 C -0.069 4.069 11 C -0.242 4.242 12 C -0.080 4.080 13 C -0.233 4.233 14 C 0.109 3.891 15 C -0.444 4.444 16 H 0.088 0.912 17 C 0.085 3.915 18 N -0.811 5.811 19 Si 0.910 3.090 20 H -0.271 1.271 21 H -0.292 1.292 22 H -0.244 1.244 23 C 0.106 3.894 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.284 0.716 39 H 0.074 0.926 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.696 -4.803 5.383 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.146 4.146 4 C -0.017 4.017 5 N -0.396 5.396 6 C 0.337 3.663 7 O -0.394 6.394 8 C -0.105 4.105 9 C -0.169 4.169 10 C -0.087 4.087 11 C -0.261 4.261 12 C -0.099 4.099 13 C -0.252 4.252 14 C 0.106 3.894 15 C -0.473 4.473 16 H 0.106 0.894 17 C -0.134 4.134 18 N -0.435 5.435 19 Si 0.737 3.263 20 H -0.197 1.197 21 H -0.220 1.220 22 H -0.167 1.167 23 C -0.017 4.017 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.845 -4.628 5.503 13.856 hybrid contribution 0.363 0.462 -0.539 0.797 sum -11.482 -4.166 4.964 13.184 Atomic orbital electron populations 1.21754 0.95565 1.01539 1.01965 1.21420 0.96075 0.94981 1.02555 1.23034 0.96196 0.97351 0.98033 1.22901 0.94846 0.89974 0.94025 1.49766 1.29165 1.24137 1.36533 1.20780 0.81482 0.79293 0.84759 1.90695 1.25083 1.72203 1.51385 1.20215 0.98196 0.95206 0.96886 1.19089 0.96435 0.93463 1.07913 1.20429 0.97622 0.93416 0.97255 1.20330 0.97909 0.98585 1.09288 1.20601 0.96058 0.96179 0.97018 1.20996 1.00421 0.95551 1.08256 1.17486 0.89314 0.92208 0.90352 1.19412 1.27429 0.93833 1.06615 0.89442 1.26155 0.91426 0.97774 0.97999 1.69710 1.23372 1.28942 1.21486 0.86339 0.80893 0.82189 0.76923 1.19725 1.21963 1.16681 1.22961 0.86542 0.96055 0.96168 0.92815 0.92761 0.92514 0.91369 0.91431 0.88105 0.90342 0.90986 0.90508 0.88289 0.89109 0.88978 0.88976 0.88301 0.90611 0.90707 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.90 37.16 0.37 -0.63 16 2 C -0.11 -0.85 5.86 -26.73 -0.16 -1.01 16 3 C -0.13 -1.24 3.98 -90.24 -0.36 -1.60 16 4 C 0.11 1.40 8.20 -8.50 -0.07 1.34 16 5 N -0.66 -10.92 3.69 -185.37 -0.68 -11.60 16 6 C 0.55 11.66 7.71 -10.99 -0.08 11.57 16 7 O -0.52 -13.54 16.81 5.56 0.09 -13.45 16 8 C -0.07 -1.34 5.02 -29.04 -0.15 -1.48 16 9 C -0.17 -4.02 4.43 -103.91 -0.46 -4.48 16 10 C -0.07 -1.54 9.66 -39.66 -0.38 -1.93 16 11 C -0.24 -5.37 10.05 -39.29 -0.39 -5.76 16 12 C -0.08 -1.86 10.02 -39.66 -0.40 -2.26 16 13 C -0.23 -5.99 7.17 -38.87 -0.28 -6.27 16 14 C 0.11 2.90 5.09 -106.82 -0.54 2.36 16 15 C -0.44 -12.35 8.56 -37.74 -0.32 -12.68 16 16 H 0.09 2.58 7.00 -52.49 -0.37 2.21 16 17 C 0.08 2.28 5.41 -17.34 -0.09 2.18 16 18 N -0.81 -22.10 13.93 55.55 0.77 -21.33 16 19 Si 0.91 21.29 24.52 -169.99 -4.17 17.12 16 20 H -0.27 -6.24 6.72 56.52 0.38 -5.86 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.24 -5.80 6.86 56.52 0.39 -5.41 16 23 C 0.11 1.24 7.99 -8.63 -0.07 1.17 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.52 7.83 -51.93 -0.41 0.11 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.95 8.12 -51.93 -0.42 0.53 16 30 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 33 H 0.10 2.03 7.12 -51.93 -0.37 1.66 16 34 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 35 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 36 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.10 2.52 4.77 -52.49 -0.25 2.27 16 38 H 0.28 7.00 8.30 -40.82 -0.34 6.67 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.89 7.89 -51.93 -0.41 0.48 16 LS Contribution 328.89 15.07 4.96 4.96 Total: -1.00 -32.45 328.89 -8.46 -40.92 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.04 Total: 2.86 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -3.39 Total: -19.48 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.09 Total: -32.93 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.17 Total: 17.12 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.45 -8.46 -40.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837260159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.352 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds