Wall clock time and date at job start Mon Mar 30 2020 01:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47213 * 2 1 4 4 C 1.53496 * 114.20940 * 174.99751 * 3 2 1 5 5 N 1.47070 * 87.98202 * 139.85300 * 4 3 2 6 6 C 1.34780 * 136.05343 * 152.85076 * 5 4 3 7 7 O 1.21279 * 119.99962 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99810 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.47105 * 179.97438 * 8 6 5 10 10 C 1.37634 * 120.12947 * 265.00368 * 9 8 6 11 11 C 1.38617 * 120.24891 * 179.97438 * 10 9 8 12 12 C 1.38659 * 120.50129 * 359.97438 * 11 10 9 13 13 C 1.37600 * 120.24526 * 0.02562 * 12 11 10 14 14 C 1.40699 * 120.12658 * 85.25608 * 9 8 6 15 15 C 1.41401 * 120.24067 * 0.02562 * 14 9 8 16 16 H 1.07990 * 120.00395 * 330.00553 * 15 14 9 17 17 C 1.39950 * 119.99504 * 150.01031 * 15 14 9 18 18 N 1.30821 * 119.99760 * 162.08641 * 17 15 14 19 19 Si 1.86805 * 120.00101 * 342.07895 * 17 15 14 20 20 H 1.48498 * 109.46722 * 95.39543 * 19 17 15 21 21 H 1.48501 * 109.47136 * 215.39649 * 19 17 15 22 22 H 1.48503 * 109.47111 * 335.39326 * 19 17 15 23 23 C 1.47070 * 87.88527 * 333.10218 * 5 4 3 24 24 H 1.08999 * 109.47041 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47105 * 300.00170 * 1 2 3 26 26 H 1.08999 * 109.47367 * 59.99796 * 1 2 3 27 27 H 1.08996 * 109.47182 * 240.00299 * 2 1 3 28 28 H 1.08995 * 109.47429 * 119.99708 * 2 1 3 29 29 H 1.09004 * 113.28197 * 41.93403 * 3 2 1 30 30 H 1.09000 * 113.46253 * 25.07184 * 4 3 2 31 31 H 1.08999 * 113.52303 * 254.64631 * 4 3 2 32 32 H 1.09005 * 109.46891 * 59.99815 * 8 6 5 33 33 H 1.08996 * 109.47321 * 300.00207 * 8 6 5 34 34 H 1.08004 * 119.87814 * 0.02562 * 10 9 8 35 35 H 1.08002 * 119.75395 * 179.97438 * 11 10 9 36 36 H 1.07995 * 119.87739 * 180.02562 * 12 11 10 37 37 H 1.08000 * 120.12345 * 179.97438 * 13 12 11 38 38 H 0.97003 * 119.99982 * 179.97438 * 18 17 15 39 39 H 1.08997 * 113.46070 * 141.67891 * 23 5 4 40 40 H 1.08994 * 113.46721 * 272.11485 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5647 1.5711 0.1221 5 7 3.5001 2.6583 -0.8663 6 6 4.2342 3.7506 -1.1567 7 8 5.2243 4.0067 -0.5048 8 6 3.8247 4.6538 -2.2914 9 6 4.8044 5.7932 -2.4051 10 6 4.5405 6.9953 -1.7888 11 6 5.4402 8.0449 -1.8914 12 6 6.6144 7.8972 -2.6138 13 6 6.8988 6.7044 -3.2381 14 6 5.9898 5.6341 -3.1462 15 6 6.2686 4.4056 -3.7884 16 1 5.8981 3.4814 -3.3704 17 6 7.0248 4.3876 -4.9659 18 7 7.5792 3.2737 -5.3702 19 14 7.2424 5.9539 -5.9604 20 1 8.5198 6.6084 -5.5796 21 1 7.2684 5.6218 -7.4075 22 1 6.1119 6.8764 -5.6845 23 6 2.2783 2.0324 -1.3940 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.4814 2.0970 0.6691 30 1 4.1041 0.6930 -0.2331 31 1 3.8961 1.8991 1.1073 32 1 2.8277 5.0500 -2.0987 33 1 3.8166 4.0868 -3.2223 34 1 3.6295 7.1210 -1.2225 35 1 5.2249 8.9848 -1.4049 36 1 7.3084 8.7215 -2.6868 37 1 7.8138 6.5918 -3.8007 38 1 8.1030 3.2611 -6.1865 39 1 1.5172 2.7523 -1.6951 40 1 2.4716 1.2786 -2.1572 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837260159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:34 Heat of formation + Delta-G solvation = -12.402974 kcal Electronic energy + Delta-G solvation = -20725.995912 eV Core-core repulsion = 17698.295789 eV Total energy + Delta-G solvation = -3027.700123 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44253 -39.94534 -38.65366 -35.50915 -34.25893 -33.51860 -32.19038 -30.27320 -28.18810 -26.98753 -26.56664 -24.35926 -23.20781 -21.86727 -21.18420 -19.86661 -19.26835 -17.94706 -17.60230 -16.96078 -16.62148 -16.26691 -15.96041 -15.47298 -15.37035 -14.82055 -14.67347 -14.53290 -13.93671 -13.84435 -13.67323 -13.45183 -13.15398 -13.04887 -12.77641 -12.69972 -12.58904 -12.51628 -12.01204 -11.84753 -11.79895 -11.55636 -11.41326 -11.20764 -10.99351 -10.73713 -9.67525 -9.42220 -9.31220 -8.88396 -6.47654 0.76846 0.88301 1.25780 1.38357 1.48306 1.70266 2.02346 2.13191 2.62304 3.29179 3.46573 3.85013 3.94539 4.10326 4.21576 4.27201 4.33187 4.43362 4.50181 4.52152 4.56489 4.59420 4.67447 4.71470 4.74551 4.90309 4.91083 4.96715 5.06559 5.14273 5.24177 5.29995 5.35485 5.40214 5.57632 5.65561 5.84586 5.92882 6.02718 6.27040 6.43621 6.75859 6.80022 6.88544 7.27915 8.20009 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.005042 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.659538 B = 5551.992472 C = 6381.114774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.097 4.097 4 C 0.092 3.908 5 N -0.665 5.665 6 C 0.539 3.461 7 O -0.584 6.584 8 C -0.063 4.063 9 C -0.176 4.176 10 C -0.079 4.079 11 C -0.228 4.228 12 C -0.091 4.091 13 C -0.256 4.256 14 C 0.083 3.917 15 C -0.472 4.472 16 H 0.051 0.949 17 C 0.048 3.952 18 N -0.853 5.853 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.250 1.250 23 C 0.100 3.900 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.092 0.908 38 H 0.292 0.708 39 H 0.095 0.905 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.099 -3.478 6.002 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.116 4.116 4 C -0.031 4.031 5 N -0.401 5.401 6 C 0.331 3.669 7 O -0.463 6.463 8 C -0.102 4.102 9 C -0.177 4.177 10 C -0.097 4.097 11 C -0.247 4.247 12 C -0.109 4.109 13 C -0.275 4.275 14 C 0.080 3.920 15 C -0.502 4.502 16 H 0.069 0.931 17 C -0.166 4.166 18 N -0.480 5.480 19 Si 0.789 3.211 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.174 1.174 23 C -0.021 4.021 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.129 0.871 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.134 0.866 33 H 0.108 0.892 34 H 0.144 0.856 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.306 -3.351 6.118 15.916 hybrid contribution 0.983 0.070 -0.544 1.126 sum -13.322 -3.281 5.574 14.809 Atomic orbital electron populations 1.21742 0.94394 1.02234 1.02281 1.21412 0.96944 0.93134 1.03101 1.22908 0.93187 0.99006 0.96467 1.23235 0.98030 0.88909 0.92910 1.49867 1.29722 1.23337 1.37181 1.20834 0.81043 0.80670 0.84370 1.90646 1.27780 1.74283 1.53633 1.20213 0.99276 0.94364 0.96331 1.19565 0.96229 0.95280 1.06664 1.20893 0.99148 0.92697 0.96944 1.20890 0.96734 0.99865 1.07239 1.21002 0.97263 0.96170 0.96418 1.21154 1.00320 0.96663 1.09409 1.17728 0.90749 0.92115 0.91380 1.19308 1.29611 0.93227 1.08057 0.93096 1.26812 0.90986 1.00414 0.98397 1.69742 1.25040 1.30552 1.22661 0.85486 0.80501 0.78720 0.76360 1.19218 1.20165 1.17362 1.23325 0.84736 0.96425 0.97642 0.92008 0.92330 0.92340 0.91237 0.90610 0.87051 0.89937 0.91825 0.86570 0.89185 0.85621 0.85136 0.85789 0.88999 0.89792 0.88646 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.90 71.98 0.71 -0.81 16 2 C -0.11 -1.35 5.86 30.60 0.18 -1.17 16 3 C -0.10 -1.67 3.98 -10.55 -0.04 -1.71 16 4 C 0.09 2.41 8.20 83.18 0.68 3.09 16 5 N -0.67 -22.00 3.69 -858.78 -3.17 -25.18 16 6 C 0.54 23.50 7.71 87.66 0.68 24.18 16 7 O -0.58 -31.67 16.81 -3.03 -0.05 -31.72 16 8 C -0.06 -2.55 5.02 29.10 0.15 -2.40 16 9 C -0.18 -8.41 4.43 -19.41 -0.09 -8.50 16 10 C -0.08 -3.33 9.66 22.22 0.21 -3.11 16 11 C -0.23 -9.34 10.05 22.46 0.23 -9.12 16 12 C -0.09 -4.00 10.02 22.22 0.22 -3.78 16 13 C -0.26 -13.16 7.17 22.73 0.16 -13.00 16 14 C 0.08 4.49 5.09 -21.29 -0.11 4.38 16 15 C -0.47 -27.66 8.56 23.46 0.20 -27.46 16 16 H 0.05 3.24 7.00 -2.92 -0.02 3.22 16 17 C 0.05 2.66 5.41 85.26 0.46 3.12 16 18 N -0.85 -48.62 13.93 21.83 0.30 -48.31 16 19 Si 0.97 44.70 24.52 68.60 1.68 46.38 16 20 H -0.27 -11.97 6.72 99.48 0.67 -11.30 16 21 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 22 H -0.25 -11.68 6.86 99.48 0.68 -11.00 16 23 C 0.10 2.16 7.99 83.09 0.66 2.83 16 24 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 0.89 7.83 -2.39 -0.02 0.87 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.11 1.76 8.12 -2.38 -0.02 1.74 16 30 H 0.08 2.09 8.10 -2.39 -0.02 2.07 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.12 3.67 8.05 -2.38 -0.02 3.65 16 33 H 0.09 3.81 7.12 -2.39 -0.02 3.79 16 34 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 35 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 36 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 37 H 0.09 4.74 4.77 -2.91 -0.01 4.72 16 38 H 0.29 14.94 8.30 -92.71 -0.77 14.17 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.09 1.84 7.89 -2.39 -0.02 1.82 16 Total: -1.00 -74.47 328.89 4.03 -70.44 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.95 Total: 21.85 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 4.31 Total: -33.46 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: -2.87 Total: -73.49 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.05 Total: -31.72 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.68 Total: 46.38 kcal Total: -74.47 4.03 -70.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837260159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.041 kcal (2) G-P(sol) polarization free energy of solvation -74.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds