Wall clock time and date at job start Mon Mar 30 2020 01:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47323 * 2 1 4 4 C 1.50705 * 109.47289 * 239.99772 * 2 1 3 5 5 H 1.08001 * 119.99761 * 237.01033 * 4 2 1 6 6 C 1.37875 * 119.99583 * 57.00768 * 4 2 1 7 7 N 1.31516 * 120.00385 * 5.54328 * 6 4 2 8 8 Si 1.86800 * 119.99542 * 185.54295 * 6 4 2 9 9 H 1.48499 * 109.47568 * 85.00285 * 8 6 4 10 10 H 1.48504 * 109.47025 * 205.00017 * 8 6 4 11 11 H 1.48504 * 109.47454 * 324.99922 * 8 6 4 12 12 C 1.53005 * 109.46848 * 119.99909 * 2 1 3 13 13 N 1.46497 * 109.47324 * 300.00004 * 12 2 1 14 14 C 1.34772 * 120.00000 * 180.02562 * 13 12 2 15 15 O 1.21284 * 120.00047 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99858 * 180.02562 * 14 13 12 17 17 F 1.39905 * 109.61335 * 310.21524 * 16 14 13 18 18 C 1.53178 * 109.54876 * 70.42917 * 16 14 13 19 19 C 1.53088 * 109.16187 * 176.84012 * 18 16 14 20 20 O 1.42905 * 109.42359 * 302.40353 * 19 18 16 21 21 C 1.42899 * 114.09605 * 61.15692 * 20 19 18 22 22 C 1.53087 * 109.41676 * 298.84070 * 21 20 19 23 23 H 1.08997 * 109.47527 * 293.93446 * 1 2 3 24 24 H 1.09005 * 109.46891 * 53.93377 * 1 2 3 25 25 H 1.09004 * 109.47225 * 173.93037 * 1 2 3 26 26 H 1.09000 * 109.46976 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47265 * 299.99683 * 3 2 1 28 28 H 1.09003 * 109.46848 * 60.00108 * 3 2 1 29 29 H 0.96992 * 119.99764 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.46787 * 179.97438 * 12 2 1 31 31 H 1.09007 * 109.46982 * 60.00425 * 12 2 1 32 32 H 0.96996 * 119.99700 * 0.02562 * 13 12 2 33 33 H 1.09000 * 109.51466 * 56.93652 * 18 16 14 34 34 H 1.08999 * 109.52680 * 296.74594 * 18 16 14 35 35 H 1.09003 * 109.48121 * 182.42039 * 19 18 16 36 36 H 1.08996 * 109.48673 * 62.39410 * 19 18 16 37 37 H 1.08996 * 109.48424 * 58.82438 * 21 20 19 38 38 H 1.09004 * 109.47982 * 178.84557 * 21 20 19 39 39 H 1.08996 * 109.52852 * 177.51264 * 22 21 20 40 40 H 1.09005 * 109.52320 * 297.70374 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6925 -1.5595 -1.1320 6 6 1.6491 -0.2765 -2.4818 7 7 0.9351 0.8208 -2.6071 8 14 2.1442 -1.2472 -3.9990 9 1 1.1620 -2.3362 -4.2323 10 1 2.1709 -0.3440 -5.1775 11 1 3.4933 -1.8329 -3.7937 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4455 14 6 1.8776 -0.4908 3.6695 15 8 2.5748 -1.4770 3.7808 16 6 1.3747 0.2192 4.9000 17 9 1.6378 1.5891 4.7921 18 6 -0.1344 -0.0032 5.0393 19 6 -0.6219 0.6548 6.3328 20 8 0.0950 0.1101 7.4425 21 6 1.5060 0.3296 7.3900 22 6 2.0792 -0.3416 6.1392 23 1 -0.3634 0.4169 0.9392 24 1 -0.3633 0.6050 -0.8307 25 1 -0.3634 -1.0219 -0.1087 26 1 3.1300 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 0.6653 1.1258 -3.4874 30 1 3.1299 -0.7217 1.2491 31 1 1.6766 -1.7490 1.2493 32 1 0.9937 0.7577 2.3564 33 1 -0.3432 -1.0724 5.0734 34 1 -0.6485 0.4425 4.1878 35 1 -1.6875 0.4630 6.4589 36 1 -0.4497 1.7298 6.2812 37 1 1.7063 1.4003 7.3520 38 1 1.9734 -0.0964 8.2779 39 1 3.1480 -0.1382 6.0739 40 1 1.9151 -1.4178 6.1956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868842734.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:04 Heat of formation + Delta-G solvation = -145.554498 kcal Electronic energy + Delta-G solvation = -22336.571682 eV Core-core repulsion = 18872.328450 eV Total energy + Delta-G solvation = -3464.243231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.02874 -39.72269 -38.65552 -36.48553 -33.47608 -33.15704 -31.48954 -30.85205 -26.73601 -25.78128 -25.45198 -24.51819 -23.90647 -21.23558 -19.88920 -18.91639 -17.86284 -16.75522 -16.30185 -15.98896 -15.79453 -15.41553 -15.04845 -14.85415 -14.68667 -14.19315 -13.99938 -13.00592 -12.84718 -12.81066 -12.72870 -12.58138 -12.47660 -12.23438 -11.63311 -11.47735 -11.23767 -10.92068 -10.89803 -10.76690 -10.71781 -10.43808 -10.25219 -10.03231 -9.68488 -9.58271 -9.25216 -8.84227 -8.57509 -8.38440 -6.06292 -4.15516 2.67195 3.26604 3.29577 3.33384 3.38247 3.63440 4.12957 4.19885 4.36623 4.56286 4.61968 4.71839 4.96614 5.13841 5.20932 5.26590 5.37242 5.41204 5.45229 5.69802 5.81170 5.97966 6.13479 6.23636 6.44019 6.66537 6.76655 6.84591 6.90170 6.90695 6.95778 7.29045 7.50719 7.65443 7.84717 7.94204 8.07779 8.31179 8.43863 8.84423 9.50175 10.95796 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.041098 B = 0.004144 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.129023 B = 6755.266475 C = 6952.734674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.129 3.871 13 N -0.702 5.702 14 C 0.492 3.508 15 O -0.535 6.535 16 C 0.105 3.895 17 F -0.194 7.194 18 C -0.174 4.174 19 C 0.063 3.937 20 O -0.381 6.381 21 C 0.060 3.940 22 C -0.159 4.159 23 H 0.005 0.995 24 H 0.082 0.918 25 H 0.030 0.970 26 H 0.027 0.973 27 H 0.086 0.914 28 H 0.006 0.994 29 H 0.260 0.740 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.401 0.599 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.853 1.888 15.749 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.007 3.993 13 N -0.352 5.352 14 C 0.275 3.725 15 O -0.413 6.413 16 C 0.083 3.917 17 F -0.174 7.174 18 C -0.213 4.213 19 C -0.014 4.014 20 O -0.299 6.299 21 C -0.017 4.017 22 C -0.197 4.197 23 H 0.024 0.976 24 H 0.101 0.899 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.237 0.763 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.512 1.235 15.779 16.026 hybrid contribution 0.185 0.118 -1.314 1.332 sum -2.327 1.353 14.466 14.714 Atomic orbital electron populations 1.21812 0.97672 1.00203 0.98982 1.18373 0.92827 0.92831 0.90482 1.21858 0.98669 0.98240 1.00122 1.20942 1.29512 1.14406 0.89871 0.92413 1.24873 0.94934 0.94749 0.98816 1.69821 1.37733 1.21347 1.23364 0.86587 0.79050 0.79903 0.82327 1.20602 1.21300 1.19957 1.21818 0.98370 0.95884 0.83196 1.46329 1.51641 1.31401 1.05830 1.20551 0.81484 0.85542 0.84966 1.90699 1.37672 1.26390 1.86507 1.21242 0.97461 0.77077 0.95918 1.92893 1.95292 1.32069 1.97169 1.22795 0.92903 1.04638 1.00915 1.22571 0.96954 0.97283 0.84604 1.87939 1.18705 1.79221 1.44061 1.22630 0.81341 0.99899 0.97792 1.22564 1.01455 1.03105 0.92599 0.97571 0.89888 0.95101 0.95400 0.89486 0.97523 0.92951 0.92440 0.92349 0.76291 0.88488 0.88843 0.87873 0.92211 0.92426 0.87964 0.89087 0.88154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.03 37.16 0.30 -2.55 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.96 8.11 37.16 0.30 -2.66 16 4 C -0.51 -13.18 8.01 -34.44 -0.28 -13.46 16 5 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 6 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 7 N -0.88 -23.35 9.45 55.43 0.52 -22.82 16 8 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.13 2.71 4.50 -4.04 -0.02 2.70 16 13 N -0.70 -12.51 4.88 -60.29 -0.29 -12.80 16 14 C 0.49 8.46 6.81 -10.99 -0.07 8.39 16 15 O -0.54 -10.78 15.93 5.55 0.09 -10.69 16 16 C 0.10 1.41 1.07 -91.58 -0.10 1.31 16 17 F -0.19 -2.71 16.00 2.25 0.04 -2.67 16 18 C -0.17 -1.94 5.19 -26.59 -0.14 -2.08 16 19 C 0.06 0.61 6.72 37.20 0.25 0.86 16 20 O -0.38 -4.26 10.77 -35.23 -0.38 -4.64 16 21 C 0.06 0.60 6.72 37.20 0.25 0.85 16 22 C -0.16 -1.90 4.62 -26.59 -0.12 -2.02 16 23 H 0.01 0.10 6.71 -51.93 -0.35 -0.25 16 24 H 0.08 2.02 6.25 -51.93 -0.32 1.69 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 2.16 6.10 -51.93 -0.32 1.85 16 28 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 29 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 32 H 0.40 6.64 6.12 -40.82 -0.25 6.39 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.56 7.93 -51.93 -0.41 0.15 16 37 H 0.06 0.55 7.93 -51.93 -0.41 0.14 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.10 1.25 7.89 -51.93 -0.41 0.84 16 LS Contribution 318.43 15.07 4.80 4.80 Total: -1.00 -28.23 318.43 -6.22 -34.46 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.18 Total: 4.64 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 0.20 Total: -5.79 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.23 Total: -35.63 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.29 Total: -15.33 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.23 -6.22 -34.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868842734.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.099 kcal (2) G-P(sol) polarization free energy of solvation -28.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds