Wall clock time and date at job start Mon Mar 30 2020 01:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47323 * 2 1 4 4 C 1.50705 * 109.47289 * 239.99772 * 2 1 3 5 5 H 1.08001 * 119.99761 * 237.01033 * 4 2 1 6 6 C 1.37875 * 119.99583 * 57.00768 * 4 2 1 7 7 N 1.31516 * 120.00385 * 5.54328 * 6 4 2 8 8 Si 1.86800 * 119.99542 * 185.54295 * 6 4 2 9 9 H 1.48499 * 109.47568 * 85.00285 * 8 6 4 10 10 H 1.48504 * 109.47025 * 205.00017 * 8 6 4 11 11 H 1.48504 * 109.47454 * 324.99922 * 8 6 4 12 12 C 1.53005 * 109.46848 * 119.99909 * 2 1 3 13 13 N 1.46497 * 109.47324 * 300.00004 * 12 2 1 14 14 C 1.34772 * 120.00000 * 180.02562 * 13 12 2 15 15 O 1.21284 * 120.00047 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99858 * 180.02562 * 14 13 12 17 17 F 1.39905 * 109.61335 * 310.21524 * 16 14 13 18 18 C 1.53178 * 109.54876 * 70.42917 * 16 14 13 19 19 C 1.53088 * 109.16187 * 176.84012 * 18 16 14 20 20 O 1.42905 * 109.42359 * 302.40353 * 19 18 16 21 21 C 1.42899 * 114.09605 * 61.15692 * 20 19 18 22 22 C 1.53087 * 109.41676 * 298.84070 * 21 20 19 23 23 H 1.08997 * 109.47527 * 293.93446 * 1 2 3 24 24 H 1.09005 * 109.46891 * 53.93377 * 1 2 3 25 25 H 1.09004 * 109.47225 * 173.93037 * 1 2 3 26 26 H 1.09000 * 109.46976 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47265 * 299.99683 * 3 2 1 28 28 H 1.09003 * 109.46848 * 60.00108 * 3 2 1 29 29 H 0.96992 * 119.99764 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.46787 * 179.97438 * 12 2 1 31 31 H 1.09007 * 109.46982 * 60.00425 * 12 2 1 32 32 H 0.96996 * 119.99700 * 0.02562 * 13 12 2 33 33 H 1.09000 * 109.51466 * 56.93652 * 18 16 14 34 34 H 1.08999 * 109.52680 * 296.74594 * 18 16 14 35 35 H 1.09003 * 109.48121 * 182.42039 * 19 18 16 36 36 H 1.08996 * 109.48673 * 62.39410 * 19 18 16 37 37 H 1.08996 * 109.48424 * 58.82438 * 21 20 19 38 38 H 1.09004 * 109.47982 * 178.84557 * 21 20 19 39 39 H 1.08996 * 109.52852 * 177.51264 * 22 21 20 40 40 H 1.09005 * 109.52320 * 297.70374 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6925 -1.5595 -1.1320 6 6 1.6491 -0.2765 -2.4818 7 7 0.9351 0.8208 -2.6071 8 14 2.1442 -1.2472 -3.9990 9 1 1.1620 -2.3362 -4.2323 10 1 2.1709 -0.3440 -5.1775 11 1 3.4933 -1.8329 -3.7937 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4455 14 6 1.8776 -0.4908 3.6695 15 8 2.5748 -1.4770 3.7808 16 6 1.3747 0.2192 4.9000 17 9 1.6378 1.5891 4.7921 18 6 -0.1344 -0.0032 5.0393 19 6 -0.6219 0.6548 6.3328 20 8 0.0950 0.1101 7.4425 21 6 1.5060 0.3296 7.3900 22 6 2.0792 -0.3416 6.1392 23 1 -0.3634 0.4169 0.9392 24 1 -0.3633 0.6050 -0.8307 25 1 -0.3634 -1.0219 -0.1087 26 1 3.1300 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 0.6653 1.1258 -3.4874 30 1 3.1299 -0.7217 1.2491 31 1 1.6766 -1.7490 1.2493 32 1 0.9937 0.7577 2.3564 33 1 -0.3432 -1.0724 5.0734 34 1 -0.6485 0.4425 4.1878 35 1 -1.6875 0.4630 6.4589 36 1 -0.4497 1.7298 6.2812 37 1 1.7063 1.4003 7.3520 38 1 1.9734 -0.0964 8.2779 39 1 3.1480 -0.1382 6.0739 40 1 1.9151 -1.4178 6.1956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868842734.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:03 Heat of formation + Delta-G solvation = -162.971991 kcal Electronic energy + Delta-G solvation = -22337.326961 eV Core-core repulsion = 18872.328450 eV Total energy + Delta-G solvation = -3464.998511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.12865 -41.04078 -39.65405 -38.20549 -35.13778 -34.21583 -32.78975 -32.21394 -28.08875 -27.60626 -27.30369 -25.93874 -24.77668 -22.43543 -21.04678 -20.67286 -19.21171 -17.92530 -17.66727 -17.24738 -16.93490 -16.68627 -16.44246 -16.17109 -15.93921 -15.54538 -15.34738 -14.80993 -14.44040 -14.12621 -13.85474 -13.62544 -13.59254 -13.43460 -13.26716 -13.10359 -12.71733 -12.62867 -12.48093 -12.28210 -12.16499 -11.80794 -11.67542 -11.52206 -11.32219 -11.01142 -10.75748 -10.51686 -10.41795 -10.09480 -8.04641 -6.19444 1.29958 1.42490 1.45247 1.52464 1.96856 2.45685 2.87121 3.12551 3.19584 3.20604 3.43094 3.60046 3.81107 4.17695 4.26054 4.34983 4.44351 4.47199 4.55005 4.58688 4.66700 4.73308 4.88723 4.91720 4.95697 5.01135 5.03740 5.09267 5.14560 5.25423 5.48571 5.63397 5.66272 6.09846 6.14222 6.16748 6.39088 6.41536 6.83613 7.01236 7.48128 8.95005 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.041098 B = 0.004144 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.129023 B = 6755.266475 C = 6952.734674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.531 4.531 5 H 0.045 0.955 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.276 1.276 12 C 0.145 3.855 13 N -0.698 5.698 14 C 0.490 3.510 15 O -0.567 6.567 16 C 0.110 3.890 17 F -0.194 7.194 18 C -0.173 4.173 19 C 0.063 3.937 20 O -0.392 6.392 21 C 0.064 3.936 22 C -0.158 4.158 23 H 0.037 0.963 24 H 0.060 0.940 25 H 0.021 0.979 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.040 0.960 31 H 0.047 0.953 32 H 0.409 0.591 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.126 0.874 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 2.397 17.061 17.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.569 4.569 5 H 0.064 0.936 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.201 1.201 12 C 0.022 3.978 13 N -0.349 5.349 14 C 0.274 3.726 15 O -0.447 6.447 16 C 0.088 3.912 17 F -0.175 7.175 18 C -0.211 4.211 19 C -0.014 4.014 20 O -0.311 6.311 21 C -0.013 4.013 22 C -0.197 4.197 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.247 0.753 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.144 0.856 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.141 0.859 39 H 0.106 0.894 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.336 1.762 17.105 17.516 hybrid contribution 0.466 -0.044 -1.713 1.776 sum -2.870 1.719 15.391 15.751 Atomic orbital electron populations 1.21647 0.96827 0.99418 0.99723 1.18378 0.93458 0.92897 0.90309 1.21698 0.97923 0.97984 1.00260 1.21227 1.29697 1.14496 0.91501 0.93627 1.25442 0.95122 0.95516 1.00904 1.69923 1.38073 1.21921 1.23721 0.85779 0.78539 0.78813 0.79698 1.20330 1.20941 1.20142 1.21382 0.97213 0.95375 0.83866 1.46172 1.51860 1.31515 1.05337 1.21268 0.80497 0.85166 0.85645 1.90683 1.38948 1.27969 1.87057 1.21240 0.99230 0.76545 0.94152 1.92894 1.95453 1.32045 1.97089 1.22851 0.90896 1.04911 1.02409 1.22717 0.97993 0.97382 0.83265 1.87935 1.19152 1.79474 1.44540 1.22716 0.80959 1.00213 0.97399 1.22597 1.01349 1.02800 0.92939 0.94410 0.92080 0.95956 0.96380 0.91734 0.94862 0.92995 0.94123 0.93471 0.75322 0.88662 0.87908 0.85608 0.91527 0.91729 0.85852 0.89414 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 8.03 71.98 0.58 -4.55 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 3 C -0.12 -5.40 8.11 71.98 0.58 -4.81 16 4 C -0.53 -27.77 8.01 25.60 0.20 -27.56 16 5 H 0.05 2.43 7.75 -2.91 -0.02 2.41 16 6 C 0.03 1.58 5.13 84.65 0.43 2.02 16 7 N -0.90 -47.46 9.45 21.45 0.20 -47.26 16 8 Si 0.94 42.21 29.54 68.60 2.03 44.23 16 9 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 12 C 0.14 6.09 4.50 86.38 0.39 6.47 16 13 N -0.70 -24.13 4.88 -463.05 -2.26 -26.39 16 14 C 0.49 16.40 6.81 87.66 0.60 17.00 16 15 O -0.57 -22.80 15.93 -3.04 -0.05 -22.85 16 16 C 0.11 2.76 1.07 -11.42 -0.01 2.75 16 17 F -0.19 -4.99 16.00 44.97 0.72 -4.27 16 18 C -0.17 -3.43 5.19 30.68 0.16 -3.27 16 19 C 0.06 1.03 6.72 72.01 0.48 1.51 16 20 O -0.39 -7.68 10.77 -148.98 -1.60 -9.28 16 21 C 0.06 1.11 6.72 72.01 0.48 1.59 16 22 C -0.16 -3.55 4.62 30.68 0.14 -3.41 16 23 H 0.04 1.35 6.71 -2.39 -0.02 1.33 16 24 H 0.06 2.93 6.25 -2.38 -0.01 2.92 16 25 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 3.20 6.10 -2.39 -0.01 3.18 16 28 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 29 H 0.26 13.28 8.31 -92.71 -0.77 12.51 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.41 12.71 6.12 -92.71 -0.57 12.14 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.02 7.93 -2.39 -0.02 1.00 16 37 H 0.06 1.05 7.93 -2.39 -0.02 1.03 16 38 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.09 2.22 7.89 -2.38 -0.02 2.20 16 Total: -1.00 -59.85 318.43 3.52 -56.32 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.47 Total: 19.48 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 4.02 Total: -9.99 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -2.06 Total: -73.65 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.65 Total: -32.13 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.72 Total: -4.27 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -59.85 3.52 -56.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868842734.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.647 kcal (2) G-P(sol) polarization free energy of solvation -59.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds