Wall clock time and date at job start Mon Mar 30 2020 01:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00100 * 2 1 4 4 C 1.53000 * 109.46851 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 240.00001 * 3 2 1 6 6 C 1.52993 * 109.47470 * 119.99504 * 3 2 1 7 7 C 1.50701 * 109.47470 * 180.02562 * 6 3 2 8 8 O 1.21284 * 119.99714 * 0.02562 * 7 6 3 9 9 N 1.34768 * 120.00508 * 180.02562 * 7 6 3 10 10 C 1.39236 * 120.00528 * 184.29432 * 9 7 6 11 11 C 1.39480 * 119.82715 * 324.70481 * 10 9 7 12 12 C 1.36381 * 120.16549 * 180.29896 * 11 10 9 13 13 C 1.40869 * 119.82848 * 359.47804 * 12 11 10 14 14 C 1.41154 * 120.16334 * 180.25024 * 13 12 11 15 15 H 1.07993 * 120.00018 * 215.01626 * 14 13 12 16 16 C 1.39908 * 119.99870 * 35.01821 * 14 13 12 17 17 N 1.30873 * 120.00086 * 355.54709 * 16 14 13 18 18 Si 1.86795 * 119.99875 * 175.54325 * 16 14 13 19 19 H 1.48503 * 109.47041 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47373 * 119.99926 * 18 16 14 21 21 H 1.48499 * 109.47238 * 240.00241 * 18 16 14 22 22 C 1.40869 * 119.67126 * 0.51736 * 13 12 11 23 23 C 1.36377 * 119.82778 * 359.73663 * 22 13 12 24 24 H 1.08007 * 120.00148 * 180.02562 * 1 2 3 25 25 H 1.08002 * 120.00242 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.00242 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47181 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.47422 * 300.00560 * 4 3 2 29 29 H 1.09005 * 109.47224 * 60.00503 * 4 3 2 30 30 H 1.09005 * 109.46890 * 299.99703 * 5 3 2 31 31 H 1.08996 * 109.47611 * 59.99225 * 5 3 2 32 32 H 1.08997 * 109.47299 * 180.02562 * 5 3 2 33 33 H 1.09005 * 109.46900 * 60.00039 * 6 3 2 34 34 H 1.08996 * 109.47295 * 300.00065 * 6 3 2 35 35 H 0.97005 * 120.00034 * 4.28252 * 9 7 6 36 36 H 1.08000 * 119.92230 * 0.02562 * 11 10 9 37 37 H 1.08003 * 120.08522 * 179.70111 * 12 11 10 38 38 H 0.96996 * 119.99711 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.08620 * 179.70804 * 22 13 12 40 40 H 1.07996 * 119.91582 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2492 6 6 2.9430 1.3863 1.2492 7 6 3.6961 2.6916 1.2495 8 8 3.5438 3.4797 0.3403 9 7 4.5386 2.9834 2.2601 10 6 5.1659 4.2255 2.3070 11 6 5.5566 4.8506 1.1229 12 6 6.1771 6.0645 1.1612 13 6 6.4131 6.6920 2.4001 14 6 7.0500 7.9508 2.4477 15 1 7.7188 8.1872 3.2620 16 6 6.8148 8.8923 1.4398 17 7 6.0740 8.5755 0.4085 18 14 7.5579 10.6013 1.5663 19 1 8.3478 10.7061 2.8195 20 1 8.4448 10.8431 0.4000 21 1 6.4716 11.6137 1.5804 22 6 6.0156 6.0544 3.5917 23 6 5.4009 4.8382 3.5378 24 1 -0.5401 -0.9354 0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.6142 3.4119 -0.0002 28 1 0.4428 2.4100 -0.8908 29 1 0.4422 2.4105 0.8892 30 1 3.6515 0.5576 -1.2492 31 1 2.3166 1.3282 -2.1392 32 1 3.4885 2.3298 -1.2491 33 1 3.6514 0.5577 1.2493 34 1 2.3164 1.3286 2.1392 35 1 4.7080 2.3280 2.9549 36 1 5.3714 4.3702 0.1736 37 1 6.4834 6.5451 0.2438 38 1 5.9112 9.2281 -0.2904 39 1 6.1975 6.5273 4.5455 40 1 5.0959 4.3480 4.4504 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878073194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:07 Heat of formation + Delta-G solvation = -0.708955 kcal Electronic energy + Delta-G solvation = -20555.054538 eV Core-core repulsion = 17527.861505 eV Total energy + Delta-G solvation = -3027.193033 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.09157 -37.92540 -36.60386 -34.38530 -32.89534 -31.29576 -29.54295 -29.24121 -27.70613 -27.12797 -24.78105 -22.58454 -21.40556 -20.82015 -19.45674 -18.17854 -17.27542 -16.80189 -16.38118 -15.28156 -15.20834 -15.02858 -14.33252 -13.99698 -13.92775 -13.31702 -13.11026 -12.71433 -12.58774 -12.09096 -12.01341 -11.77853 -11.65109 -11.43380 -11.26330 -11.07546 -11.03344 -10.87787 -10.78101 -10.57265 -10.46691 -9.84987 -9.81710 -9.43838 -9.31278 -8.90160 -8.62510 -7.50673 -6.86200 -6.57934 -4.31551 2.21126 2.59974 3.01445 3.10956 3.11753 3.16820 3.37396 3.79520 4.00357 4.73060 4.76866 4.80284 4.98830 5.23843 5.27683 5.44859 5.58803 5.66309 5.70922 5.76332 5.91181 6.10632 6.11312 6.14941 6.21622 6.40023 6.49160 6.59103 6.64546 6.77864 6.91309 7.02818 7.06551 7.22373 7.32198 7.65352 7.70286 8.01345 8.11375 8.22895 8.36229 8.69089 8.82655 8.95325 9.03935 10.33149 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.034569 B = 0.003753 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.772725 B = 7459.856562 C = 7924.223839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.142 4.142 3 C -0.019 4.019 4 C -0.157 4.157 5 C -0.150 4.150 6 C -0.127 4.127 7 C 0.499 3.501 8 O -0.518 6.518 9 N -0.656 5.656 10 C 0.006 3.994 11 C -0.093 4.093 12 C -0.144 4.144 13 C 0.099 3.901 14 C -0.463 4.463 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.808 5.808 18 Si 0.914 3.086 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.204 4.204 23 C -0.115 4.115 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.394 0.606 36 H 0.108 0.892 37 H 0.130 0.870 38 H 0.277 0.723 39 H 0.096 0.904 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.324 -13.361 0.402 14.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.160 4.160 3 C -0.019 4.019 4 C -0.213 4.213 5 C -0.207 4.207 6 C -0.167 4.167 7 C 0.286 3.714 8 O -0.395 6.395 9 N -0.298 5.298 10 C -0.086 4.086 11 C -0.113 4.113 12 C -0.164 4.164 13 C 0.097 3.903 14 C -0.494 4.494 15 H 0.094 0.906 16 C -0.146 4.146 17 N -0.435 5.435 18 Si 0.739 3.261 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.224 4.224 23 C -0.135 4.135 24 H 0.111 0.889 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.227 0.773 36 H 0.126 0.874 37 H 0.147 0.853 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.545 -12.696 -0.470 14.291 hybrid contribution 0.175 0.312 0.501 0.616 sum -6.370 -12.384 0.031 13.926 Atomic orbital electron populations 1.24001 0.96220 1.01935 1.01598 1.22986 0.95924 0.97693 0.99365 1.19351 0.94952 0.93001 0.94617 1.22196 0.98513 1.00131 1.00510 1.22062 0.99149 1.03826 0.95623 1.21684 0.99116 0.96116 0.99806 1.20545 0.79566 0.88544 0.82705 1.90581 1.64061 1.50150 1.34749 1.43071 1.44089 1.15926 1.26748 1.17302 1.08501 0.88370 0.94433 1.20642 0.98207 0.96638 0.95854 1.21307 1.02306 0.93392 0.99397 1.17728 0.89833 0.91949 0.90813 1.19509 1.24651 0.98017 1.07255 0.90650 1.25887 0.93724 1.00977 0.94044 1.69797 1.30396 1.35604 1.07685 0.86166 0.79324 0.81430 0.79141 1.18645 1.20003 1.20020 1.20690 1.07035 0.96896 0.97777 1.20080 1.02943 0.96236 0.94271 0.88947 0.87779 0.87691 0.89025 0.93023 0.93437 0.93593 0.93194 0.89053 0.89331 0.89297 0.77310 0.87407 0.85258 0.91168 0.88609 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.93 13.70 29.02 0.40 -1.53 16 2 C -0.14 -1.45 8.76 -36.02 -0.32 -1.77 16 3 C -0.02 -0.23 0.74 -155.66 -0.11 -0.34 16 4 C -0.16 -2.12 6.83 37.16 0.25 -1.86 16 5 C -0.15 -1.97 8.16 37.16 0.30 -1.67 16 6 C -0.13 -1.52 4.75 -27.89 -0.13 -1.65 16 7 C 0.50 8.30 7.07 -10.99 -0.08 8.22 16 8 O -0.52 -10.50 8.77 5.55 0.05 -10.45 16 9 N -0.66 -11.16 5.30 -9.74 -0.05 -11.21 16 10 C 0.01 0.13 6.31 -83.57 -0.53 -0.39 16 11 C -0.09 -2.30 8.61 -39.79 -0.34 -2.64 16 12 C -0.14 -3.85 8.61 -39.26 -0.34 -4.19 16 13 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 14 C -0.46 -12.41 9.02 -37.85 -0.34 -12.76 16 15 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 16 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 17 N -0.81 -21.61 10.61 55.55 0.59 -21.02 16 18 Si 0.91 19.21 29.56 -169.99 -5.03 14.18 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 C -0.20 -4.93 9.74 -39.26 -0.38 -5.32 16 23 C -0.12 -2.50 9.90 -39.79 -0.39 -2.90 16 24 H 0.09 0.74 8.06 -52.48 -0.42 0.32 16 25 H 0.10 1.03 5.69 -52.49 -0.30 0.73 16 26 H 0.11 0.93 8.06 -52.49 -0.42 0.51 16 27 H 0.09 1.54 5.51 -51.93 -0.29 1.26 16 28 H 0.05 0.64 7.50 -51.93 -0.39 0.25 16 29 H 0.05 0.59 7.50 -51.93 -0.39 0.20 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.48 5.51 -51.93 -0.29 1.19 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.39 5.18 8.82 -40.82 -0.36 4.82 16 36 H 0.11 2.64 6.22 -52.49 -0.33 2.31 16 37 H 0.13 3.63 6.15 -52.48 -0.32 3.31 16 38 H 0.28 6.80 8.30 -40.82 -0.34 6.47 16 39 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 40 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 322.57 15.07 4.86 4.86 Total: -1.00 -29.30 322.57 -7.86 -37.16 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -5.59 Total: 11.53 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -2.70 Total: -25.05 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.54 Total: -32.23 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.05 Total: -10.45 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.30 -7.86 -37.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878073194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.454 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds