Wall clock time and date at job start Mon Mar 30 2020 01:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00100 * 2 1 4 4 C 1.53000 * 109.46851 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 240.00001 * 3 2 1 6 6 C 1.52993 * 109.47470 * 119.99504 * 3 2 1 7 7 C 1.50701 * 109.47470 * 180.02562 * 6 3 2 8 8 O 1.21284 * 119.99714 * 0.02562 * 7 6 3 9 9 N 1.34768 * 120.00508 * 180.02562 * 7 6 3 10 10 C 1.39236 * 120.00528 * 184.29432 * 9 7 6 11 11 C 1.39480 * 119.82715 * 324.70481 * 10 9 7 12 12 C 1.36381 * 120.16549 * 180.29896 * 11 10 9 13 13 C 1.40869 * 119.82848 * 359.47804 * 12 11 10 14 14 C 1.41154 * 120.16334 * 180.25024 * 13 12 11 15 15 H 1.07993 * 120.00018 * 215.01626 * 14 13 12 16 16 C 1.39908 * 119.99870 * 35.01821 * 14 13 12 17 17 N 1.30873 * 120.00086 * 355.54709 * 16 14 13 18 18 Si 1.86795 * 119.99875 * 175.54325 * 16 14 13 19 19 H 1.48503 * 109.47041 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47373 * 119.99926 * 18 16 14 21 21 H 1.48499 * 109.47238 * 240.00241 * 18 16 14 22 22 C 1.40869 * 119.67126 * 0.51736 * 13 12 11 23 23 C 1.36377 * 119.82778 * 359.73663 * 22 13 12 24 24 H 1.08007 * 120.00148 * 180.02562 * 1 2 3 25 25 H 1.08002 * 120.00242 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.00242 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47181 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.47422 * 300.00560 * 4 3 2 29 29 H 1.09005 * 109.47224 * 60.00503 * 4 3 2 30 30 H 1.09005 * 109.46890 * 299.99703 * 5 3 2 31 31 H 1.08996 * 109.47611 * 59.99225 * 5 3 2 32 32 H 1.08997 * 109.47299 * 180.02562 * 5 3 2 33 33 H 1.09005 * 109.46900 * 60.00039 * 6 3 2 34 34 H 1.08996 * 109.47295 * 300.00065 * 6 3 2 35 35 H 0.97005 * 120.00034 * 4.28252 * 9 7 6 36 36 H 1.08000 * 119.92230 * 0.02562 * 11 10 9 37 37 H 1.08003 * 120.08522 * 179.70111 * 12 11 10 38 38 H 0.96996 * 119.99711 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.08620 * 179.70804 * 22 13 12 40 40 H 1.07996 * 119.91582 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2492 6 6 2.9430 1.3863 1.2492 7 6 3.6961 2.6916 1.2495 8 8 3.5438 3.4797 0.3403 9 7 4.5386 2.9834 2.2601 10 6 5.1659 4.2255 2.3070 11 6 5.5566 4.8506 1.1229 12 6 6.1771 6.0645 1.1612 13 6 6.4131 6.6920 2.4001 14 6 7.0500 7.9508 2.4477 15 1 7.7188 8.1872 3.2620 16 6 6.8148 8.8923 1.4398 17 7 6.0740 8.5755 0.4085 18 14 7.5579 10.6013 1.5663 19 1 8.3478 10.7061 2.8195 20 1 8.4448 10.8431 0.4000 21 1 6.4716 11.6137 1.5804 22 6 6.0156 6.0544 3.5917 23 6 5.4009 4.8382 3.5378 24 1 -0.5401 -0.9354 0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.6142 3.4119 -0.0002 28 1 0.4428 2.4100 -0.8908 29 1 0.4422 2.4105 0.8892 30 1 3.6515 0.5576 -1.2492 31 1 2.3166 1.3282 -2.1392 32 1 3.4885 2.3298 -1.2491 33 1 3.6514 0.5577 1.2493 34 1 2.3164 1.3286 2.1392 35 1 4.7080 2.3280 2.9549 36 1 5.3714 4.3702 0.1736 37 1 6.4834 6.5451 0.2438 38 1 5.9112 9.2281 -0.2904 39 1 6.1975 6.5273 4.5455 40 1 5.0959 4.3480 4.4504 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878073194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:07 Heat of formation + Delta-G solvation = -16.795414 kcal Electronic energy + Delta-G solvation = -20555.752099 eV Core-core repulsion = 17527.861505 eV Total energy + Delta-G solvation = -3027.890594 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.46027 -39.47905 -37.93542 -36.06027 -34.66263 -32.23394 -31.39740 -30.94423 -29.00668 -28.18563 -26.55577 -23.74630 -23.16813 -22.45200 -20.95214 -19.23044 -19.10291 -18.20491 -17.78553 -16.99629 -16.37902 -16.24408 -15.76109 -15.49495 -15.16153 -14.80907 -14.56638 -14.29800 -13.92161 -13.76167 -13.58338 -13.30375 -13.02515 -12.84833 -12.65198 -12.61635 -12.37520 -12.22762 -11.99218 -11.79989 -11.66417 -11.62304 -11.49279 -11.11829 -10.55903 -10.25153 -10.15868 -9.42545 -8.70230 -8.48787 -6.31518 0.84455 1.14671 1.38450 1.44501 1.46061 1.54356 1.88974 2.23752 2.46647 2.83370 3.69043 3.75204 3.88039 4.02511 4.24578 4.41992 4.46108 4.50333 4.51455 4.66582 4.77157 4.84413 4.98116 5.01358 5.06754 5.13183 5.14474 5.19116 5.23922 5.36347 5.45222 5.49161 5.63432 5.73104 5.80251 5.90770 6.00836 6.12360 6.18646 6.38442 6.72922 6.81362 6.97709 7.04663 7.53560 8.44330 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.034569 B = 0.003753 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.772725 B = 7459.856562 C = 7924.223839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C -0.019 4.019 4 C -0.154 4.154 5 C -0.148 4.148 6 C -0.116 4.116 7 C 0.494 3.506 8 O -0.557 6.557 9 N -0.650 5.650 10 C 0.025 3.975 11 C -0.108 4.108 12 C -0.168 4.168 13 C 0.063 3.937 14 C -0.497 4.497 15 H 0.078 0.922 16 C 0.022 3.978 17 N -0.848 5.848 18 Si 0.990 3.010 19 H -0.254 1.254 20 H -0.268 1.268 21 H -0.270 1.270 22 C -0.210 4.210 23 C -0.111 4.111 24 H 0.112 0.888 25 H 0.096 0.904 26 H 0.126 0.874 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.417 0.583 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.281 0.719 39 H 0.110 0.890 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.271 -15.692 2.112 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.163 4.163 3 C -0.020 4.020 4 C -0.211 4.211 5 C -0.205 4.205 6 C -0.155 4.155 7 C 0.283 3.717 8 O -0.436 6.436 9 N -0.295 5.295 10 C -0.068 4.068 11 C -0.128 4.128 12 C -0.188 4.188 13 C 0.061 3.939 14 C -0.529 4.529 15 H 0.096 0.904 16 C -0.189 4.189 17 N -0.476 5.476 18 Si 0.811 3.189 19 H -0.178 1.178 20 H -0.193 1.193 21 H -0.195 1.195 22 C -0.230 4.230 23 C -0.131 4.131 24 H 0.131 0.869 25 H 0.115 0.885 26 H 0.144 0.856 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.255 0.745 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.128 0.872 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.499 -15.081 1.265 16.890 hybrid contribution 0.348 0.863 -0.061 0.932 sum -7.151 -14.218 1.204 15.961 Atomic orbital electron populations 1.24155 0.96169 1.02613 1.00306 1.22906 0.96001 0.96962 1.00456 1.19340 0.94646 0.93770 0.94195 1.22129 0.98678 0.99009 1.01268 1.21997 0.99459 1.02433 0.96610 1.21726 0.99399 0.93722 1.00661 1.21523 0.78992 0.89768 0.81394 1.90613 1.64981 1.51843 1.36177 1.43029 1.43869 1.14699 1.27910 1.17373 1.06268 0.89741 0.93456 1.20673 0.98801 0.96411 0.96947 1.21170 1.04233 0.94587 0.98813 1.18055 0.91332 0.92778 0.91717 1.19776 1.25918 0.98858 1.08299 0.90414 1.26830 0.93797 1.05030 0.93257 1.69918 1.31977 1.37087 1.08607 0.85037 0.78508 0.75895 0.79454 1.17771 1.19265 1.19495 1.20956 1.06799 0.97841 0.97419 1.20450 1.01460 0.95376 0.95823 0.86935 0.88529 0.85584 0.92895 0.92654 0.92336 0.91947 0.93020 0.92689 0.86098 0.86768 0.74516 0.88240 0.87944 0.90850 0.87164 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.07 13.70 67.78 0.93 -2.14 16 2 C -0.15 -2.43 8.76 25.65 0.22 -2.20 16 3 C -0.02 -0.42 0.74 -52.93 -0.04 -0.46 16 4 C -0.15 -4.04 6.83 71.98 0.49 -3.55 16 5 C -0.15 -3.77 8.16 71.98 0.59 -3.18 16 6 C -0.12 -2.37 4.75 29.85 0.14 -2.23 16 7 C 0.49 15.70 7.07 87.66 0.62 16.32 16 8 O -0.56 -23.09 8.77 -3.04 -0.03 -23.12 16 9 N -0.65 -20.61 5.30 -303.12 -1.61 -22.22 16 10 C 0.03 1.09 6.31 38.56 0.24 1.33 16 11 C -0.11 -5.51 8.61 22.14 0.19 -5.32 16 12 C -0.17 -9.50 8.61 22.48 0.19 -9.31 16 13 C 0.06 3.53 5.55 -21.28 -0.12 3.42 16 14 C -0.50 -27.66 9.02 23.39 0.21 -27.45 16 15 H 0.08 4.10 7.85 -2.91 -0.02 4.08 16 16 C 0.02 1.16 5.42 85.24 0.46 1.62 16 17 N -0.85 -47.78 10.61 21.82 0.23 -47.55 16 18 Si 0.99 40.36 29.56 68.60 2.03 42.39 16 19 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 20 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 21 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 22 C -0.21 -10.13 9.74 22.48 0.22 -9.91 16 23 C -0.11 -4.62 9.90 22.13 0.22 -4.40 16 24 H 0.11 1.34 8.06 -2.91 -0.02 1.32 16 25 H 0.10 1.66 5.69 -2.91 -0.02 1.64 16 26 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16 27 H 0.05 1.83 5.51 -2.39 -0.01 1.82 16 28 H 0.05 1.36 7.50 -2.39 -0.02 1.34 16 29 H 0.06 1.36 7.50 -2.38 -0.02 1.34 16 30 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.83 5.51 -2.39 -0.01 1.82 16 33 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.42 9.33 8.82 -92.70 -0.82 8.51 16 36 H 0.10 5.15 6.22 -2.91 -0.02 5.13 16 37 H 0.10 6.24 6.15 -2.91 -0.02 6.22 16 38 H 0.28 14.51 8.30 -92.71 -0.77 13.74 16 39 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 40 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -68.43 322.57 5.43 -63.00 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: 0.23 Total: 34.96 kcal Atomic # 6 Polarization: -52.05 SS G_CDS: 4.58 Total: -47.47 kcal Atomic # 7 Polarization: -68.39 SS G_CDS: -1.38 Total: -69.76 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.03 Total: -23.12 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -68.43 5.43 -63.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878073194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.207 kcal (2) G-P(sol) polarization free energy of solvation -68.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds