Wall clock time and date at job start Mon Mar 30 2020 01:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 120.00247 * 2 1 4 4 C 1.53006 * 109.46866 * 124.99980 * 3 2 1 5 5 C 1.52999 * 109.46623 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46997 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47146 * 54.99480 * 6 5 4 8 8 C 1.50697 * 109.47301 * 175.00426 * 6 5 4 9 9 O 1.21294 * 119.99911 * 359.97438 * 8 6 5 10 10 N 1.34777 * 119.99850 * 180.02562 * 8 6 5 11 11 C 1.37099 * 119.99942 * 179.97438 * 10 8 6 12 12 H 1.08006 * 119.99651 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00236 * 179.97438 * 11 10 8 14 14 N 1.31413 * 119.99524 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00147 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46803 * 90.00180 * 15 13 11 17 17 H 1.48500 * 109.47047 * 210.00095 * 15 13 11 18 18 H 1.48496 * 109.47207 * 330.00240 * 15 13 11 19 19 C 1.50703 * 109.46993 * 295.00143 * 6 5 4 20 20 C 1.38237 * 120.00123 * 299.72569 * 19 6 5 21 21 C 1.38236 * 120.00036 * 179.78582 * 20 19 6 22 22 C 1.38237 * 119.99796 * 0.44532 * 21 20 19 23 23 C 1.38227 * 119.99989 * 359.80576 * 22 21 20 24 24 C 1.38235 * 120.00002 * 119.99794 * 19 6 5 25 25 H 1.08001 * 119.99621 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99939 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99621 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47512 * 5.00103 * 3 2 1 29 29 H 1.09000 * 109.47247 * 244.99812 * 3 2 1 30 30 H 1.09000 * 109.47050 * 299.99952 * 4 3 2 31 31 H 1.09001 * 109.46801 * 60.00064 * 4 3 2 32 32 H 1.09000 * 109.47486 * 299.99829 * 5 4 3 33 33 H 1.09001 * 109.47362 * 60.00551 * 5 4 3 34 34 H 0.96997 * 120.00076 * 0.02562 * 10 8 6 35 35 H 0.97005 * 119.99529 * 179.97438 * 14 13 11 36 36 H 1.08002 * 119.99558 * 0.02562 * 20 19 6 37 37 H 1.07999 * 119.99791 * 180.27236 * 21 20 19 38 38 H 1.08003 * 119.99870 * 179.83495 * 22 21 20 39 39 H 1.08011 * 120.00043 * 180.02562 * 23 22 21 40 40 H 1.08000 * 120.00141 * 359.97438 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1817 5 6 3.8006 2.6577 1.1813 6 6 4.7717 2.6859 2.3633 7 1 5.4190 1.8098 2.3228 8 6 5.6119 3.9350 2.2935 9 8 5.4502 4.7248 1.3872 10 7 6.5436 4.1741 3.2376 11 6 7.3083 5.3102 3.1738 12 1 7.1637 6.0138 2.3673 13 6 8.2685 5.5570 4.1474 14 7 8.4439 4.7010 5.1290 15 14 9.3099 7.1053 4.0609 16 1 8.6336 8.1988 4.8040 17 1 10.6392 6.8424 4.6683 18 1 9.4846 7.5057 2.6416 19 6 3.9930 2.6758 3.6535 20 6 3.1047 3.6974 3.9328 21 6 2.3871 3.6858 5.1142 22 6 2.5647 2.6573 6.0206 23 6 3.4569 1.6384 5.7438 24 6 4.1712 1.6477 4.5603 25 1 -0.5399 0.9354 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3588 2.1316 0.0896 29 1 2.6214 1.4025 -0.9314 30 1 2.4773 1.2355 2.1131 31 1 3.7400 0.5063 1.0921 32 1 4.3585 2.7547 0.2499 33 1 3.0960 3.4845 1.2707 34 1 6.6736 3.5419 3.9617 35 1 9.1145 4.8731 5.8084 36 1 2.9684 4.5027 3.2260 37 1 1.6898 4.4817 5.3303 38 1 2.0061 2.6496 6.9449 39 1 3.5954 0.8346 6.4518 40 1 4.8682 0.8516 4.3440 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879173581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:21 Heat of formation + Delta-G solvation = -19.557242 kcal Electronic energy + Delta-G solvation = -20607.292413 eV Core-core repulsion = 17579.282057 eV Total energy + Delta-G solvation = -3028.010356 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.59071 -37.77891 -36.20880 -34.12762 -33.55270 -31.35024 -30.64296 -30.54266 -28.00890 -25.45615 -23.81916 -22.40010 -21.69355 -20.56639 -19.85262 -18.73811 -17.81267 -16.65630 -15.85052 -15.65358 -15.14119 -14.63158 -14.40930 -14.15942 -13.98478 -13.62884 -13.36093 -13.08642 -13.02689 -12.37868 -12.19223 -12.11072 -11.80091 -11.50382 -11.31996 -11.15027 -11.03703 -10.71540 -10.60682 -10.44875 -10.38247 -10.21875 -10.18187 -9.49659 -9.35117 -8.72307 -8.56381 -8.04614 -7.93611 -6.39809 -3.80420 1.69944 1.75710 2.23257 3.18240 3.26939 3.32799 3.89329 4.12307 4.19532 4.70633 4.97911 5.04521 5.10583 5.24396 5.28252 5.32040 5.34286 5.36935 5.48094 5.62115 5.71259 5.80473 5.83781 5.89523 5.92991 6.00858 6.12588 6.22672 6.28251 6.38932 6.48647 6.56098 6.57887 6.69340 6.74710 6.80336 6.84701 7.02983 7.34343 7.56314 8.07420 8.62382 9.18641 9.57201 10.07791 10.77438 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.004919 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.805219 B = 5690.806567 C = 6653.764569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.096 4.096 4 C -0.114 4.114 5 C -0.089 4.089 6 C -0.063 4.063 7 H 0.087 0.913 8 C 0.447 3.553 9 O -0.595 6.595 10 N -0.554 5.554 11 C -0.301 4.301 12 H 0.103 0.897 13 C 0.024 3.976 14 N -0.898 5.898 15 Si 0.928 3.072 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.269 1.269 19 C -0.058 4.058 20 C -0.103 4.103 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.120 4.120 24 C -0.115 4.115 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.393 0.607 35 H 0.271 0.729 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.057 -9.341 -1.536 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.164 4.164 3 C -0.133 4.133 4 C -0.152 4.152 5 C -0.127 4.127 6 C -0.085 4.085 7 H 0.105 0.895 8 C 0.232 3.768 9 O -0.481 6.481 10 N -0.189 5.189 11 C -0.431 4.431 12 H 0.121 0.879 13 C -0.178 4.178 14 N -0.538 5.538 15 Si 0.755 3.245 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.059 4.059 20 C -0.121 4.121 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.138 4.138 24 C -0.133 4.133 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.227 0.773 35 H 0.081 0.919 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.001 -8.794 -1.973 15.008 hybrid contribution 0.715 0.348 0.660 1.033 sum -11.287 -8.446 -1.313 14.158 Atomic orbital electron populations 1.23810 0.96038 1.01550 1.02744 1.23044 0.96007 0.98779 0.98525 1.20795 0.98335 0.94896 0.99274 1.21580 0.97673 0.97987 0.97923 1.21323 0.97254 0.96763 0.97322 1.20290 0.96245 0.98922 0.93003 0.89468 1.19656 0.83916 0.88333 0.84854 1.90509 1.71603 1.49357 1.36613 1.41872 1.31489 1.21728 1.23785 1.19723 1.13540 0.99279 1.10533 0.87944 1.25265 0.98077 0.99059 0.95409 1.69630 1.34852 1.36119 1.13244 0.85884 0.78757 0.81138 0.78676 1.20411 1.20909 1.19395 1.19662 0.96234 0.94616 0.95373 1.21030 0.95891 0.97959 0.97185 1.21065 0.99932 0.98371 0.94391 1.21034 0.99364 0.95132 0.99191 1.21025 0.97043 0.98779 0.96972 1.21043 0.99691 0.98453 0.94157 0.88711 0.88888 0.87617 0.91557 0.90956 0.91774 0.92118 0.90946 0.91435 0.77331 0.91879 0.86109 0.86534 0.86700 0.86497 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 14.32 29.01 0.42 -1.56 16 2 C -0.15 -1.51 9.52 -36.03 -0.34 -1.85 16 3 C -0.10 -1.09 5.66 -27.88 -0.16 -1.25 16 4 C -0.11 -1.45 5.01 -26.73 -0.13 -1.59 16 5 C -0.09 -1.42 3.93 -26.73 -0.11 -1.52 16 6 C -0.06 -1.13 2.38 -92.92 -0.22 -1.36 16 7 H 0.09 1.45 7.88 -51.93 -0.41 1.04 16 8 C 0.45 10.64 6.73 -10.99 -0.07 10.56 16 9 O -0.59 -16.09 15.50 5.55 0.09 -16.00 16 10 N -0.55 -14.34 5.19 -10.96 -0.06 -14.39 16 11 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 12 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 13 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 14 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 15 Si 0.93 21.25 29.55 -169.99 -5.02 16.22 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 19 C -0.06 -0.99 3.56 -104.62 -0.37 -1.36 16 20 C -0.10 -1.76 8.76 -39.58 -0.35 -2.11 16 21 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 22 C -0.13 -1.80 10.05 -39.59 -0.40 -2.20 16 23 C -0.12 -1.69 10.05 -39.59 -0.40 -2.09 16 24 C -0.12 -1.76 9.67 -39.58 -0.38 -2.15 16 25 H 0.09 0.89 7.84 -52.49 -0.41 0.48 16 26 H 0.09 0.77 8.06 -52.49 -0.42 0.35 16 27 H 0.11 1.00 8.06 -52.49 -0.42 0.57 16 28 H 0.07 0.76 7.79 -51.93 -0.40 0.36 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.85 7.38 -51.93 -0.38 0.47 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.22 7.95 -51.93 -0.41 0.81 16 33 H 0.07 1.13 7.24 -51.93 -0.38 0.76 16 34 H 0.39 9.97 7.78 -40.82 -0.32 9.65 16 35 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.12 2.17 7.56 -52.49 -0.40 1.77 16 37 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 40 H 0.12 1.62 7.95 -52.49 -0.42 1.20 16 LS Contribution 340.87 15.07 5.14 5.14 Total: -1.00 -30.72 340.87 -8.29 -39.01 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -6.00 Total: 12.82 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -3.15 Total: -18.76 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.67 Total: -38.43 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.09 Total: -16.00 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.72 -8.29 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879173581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.452 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds