Wall clock time and date at job start Mon Mar 30 2020 01:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 120.00247 * 2 1 4 4 C 1.53006 * 109.46866 * 124.99980 * 3 2 1 5 5 C 1.52999 * 109.46623 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46997 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47146 * 54.99480 * 6 5 4 8 8 C 1.50697 * 109.47301 * 175.00426 * 6 5 4 9 9 O 1.21294 * 119.99911 * 359.97438 * 8 6 5 10 10 N 1.34777 * 119.99850 * 180.02562 * 8 6 5 11 11 C 1.37099 * 119.99942 * 179.97438 * 10 8 6 12 12 H 1.08006 * 119.99651 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00236 * 179.97438 * 11 10 8 14 14 N 1.31413 * 119.99524 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00147 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46803 * 90.00180 * 15 13 11 17 17 H 1.48500 * 109.47047 * 210.00095 * 15 13 11 18 18 H 1.48496 * 109.47207 * 330.00240 * 15 13 11 19 19 C 1.50703 * 109.46993 * 295.00143 * 6 5 4 20 20 C 1.38237 * 120.00123 * 299.72569 * 19 6 5 21 21 C 1.38236 * 120.00036 * 179.78582 * 20 19 6 22 22 C 1.38237 * 119.99796 * 0.44532 * 21 20 19 23 23 C 1.38227 * 119.99989 * 359.80576 * 22 21 20 24 24 C 1.38235 * 120.00002 * 119.99794 * 19 6 5 25 25 H 1.08001 * 119.99621 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99939 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99621 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47512 * 5.00103 * 3 2 1 29 29 H 1.09000 * 109.47247 * 244.99812 * 3 2 1 30 30 H 1.09000 * 109.47050 * 299.99952 * 4 3 2 31 31 H 1.09001 * 109.46801 * 60.00064 * 4 3 2 32 32 H 1.09000 * 109.47486 * 299.99829 * 5 4 3 33 33 H 1.09001 * 109.47362 * 60.00551 * 5 4 3 34 34 H 0.96997 * 120.00076 * 0.02562 * 10 8 6 35 35 H 0.97005 * 119.99529 * 179.97438 * 14 13 11 36 36 H 1.08002 * 119.99558 * 0.02562 * 20 19 6 37 37 H 1.07999 * 119.99791 * 180.27236 * 21 20 19 38 38 H 1.08003 * 119.99870 * 179.83495 * 22 21 20 39 39 H 1.08011 * 120.00043 * 180.02562 * 23 22 21 40 40 H 1.08000 * 120.00141 * 359.97438 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1817 5 6 3.8006 2.6577 1.1813 6 6 4.7717 2.6859 2.3633 7 1 5.4190 1.8098 2.3228 8 6 5.6119 3.9350 2.2935 9 8 5.4502 4.7248 1.3872 10 7 6.5436 4.1741 3.2376 11 6 7.3083 5.3102 3.1738 12 1 7.1637 6.0138 2.3673 13 6 8.2685 5.5570 4.1474 14 7 8.4439 4.7010 5.1290 15 14 9.3099 7.1053 4.0609 16 1 8.6336 8.1988 4.8040 17 1 10.6392 6.8424 4.6683 18 1 9.4846 7.5057 2.6416 19 6 3.9930 2.6758 3.6535 20 6 3.1047 3.6974 3.9328 21 6 2.3871 3.6858 5.1142 22 6 2.5647 2.6573 6.0206 23 6 3.4569 1.6384 5.7438 24 6 4.1712 1.6477 4.5603 25 1 -0.5399 0.9354 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3588 2.1316 0.0896 29 1 2.6214 1.4025 -0.9314 30 1 2.4773 1.2355 2.1131 31 1 3.7400 0.5063 1.0921 32 1 4.3585 2.7547 0.2499 33 1 3.0960 3.4845 1.2707 34 1 6.6736 3.5419 3.9617 35 1 9.1145 4.8731 5.8084 36 1 2.9684 4.5027 3.2260 37 1 1.6898 4.4817 5.3303 38 1 2.0061 2.6496 6.9449 39 1 3.5954 0.8346 6.4518 40 1 4.8682 0.8516 4.3440 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879173581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:20 Heat of formation + Delta-G solvation = -35.848549 kcal Electronic energy + Delta-G solvation = -20607.998857 eV Core-core repulsion = 17579.282057 eV Total energy + Delta-G solvation = -3028.716800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.07251 -39.40322 -37.29773 -36.01427 -34.91585 -33.27154 -31.87300 -31.70970 -29.25629 -27.23986 -25.26218 -23.59486 -22.90510 -21.97810 -20.77703 -20.37316 -19.77751 -18.01232 -17.53881 -16.71162 -16.64117 -16.21768 -15.86411 -15.56552 -15.25794 -15.10209 -14.73190 -14.47570 -14.17354 -13.79104 -13.59559 -13.50652 -13.27736 -12.95329 -12.78874 -12.44556 -12.40706 -12.28174 -12.13668 -11.82279 -11.68680 -11.60687 -11.52682 -11.42150 -10.48954 -10.14762 -10.02943 -9.75004 -9.47390 -8.47670 -5.96823 0.49542 0.56773 1.35830 1.39426 1.45761 1.52560 2.01825 2.28314 2.90946 3.17541 3.20803 3.83802 3.89942 4.02198 4.08259 4.17745 4.21630 4.31078 4.34984 4.40272 4.53904 4.66705 4.69083 4.74448 4.83354 4.88975 4.95033 5.09817 5.14313 5.18641 5.23147 5.37242 5.39250 5.48078 5.63184 5.66819 5.76791 5.79718 5.95791 5.98608 6.18099 6.56674 7.09749 7.54094 8.08467 8.69377 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.004919 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.805219 B = 5690.806567 C = 6653.764569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C -0.094 4.094 4 C -0.100 4.100 5 C -0.082 4.082 6 C -0.052 4.052 7 H 0.105 0.895 8 C 0.445 3.555 9 O -0.634 6.634 10 N -0.563 5.563 11 C -0.337 4.337 12 H 0.078 0.922 13 C -0.011 4.011 14 N -0.917 5.917 15 Si 0.992 3.008 16 H -0.272 1.272 17 H -0.268 1.268 18 H -0.272 1.272 19 C -0.073 4.073 20 C -0.128 4.128 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.119 4.119 24 C -0.121 4.121 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.395 0.605 35 H 0.278 0.722 36 H 0.097 0.903 37 H 0.134 0.866 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.600 -10.879 -0.080 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.175 4.175 3 C -0.131 4.131 4 C -0.137 4.137 5 C -0.120 4.120 6 C -0.073 4.073 7 H 0.123 0.877 8 C 0.233 3.767 9 O -0.522 6.522 10 N -0.198 5.198 11 C -0.467 4.467 12 H 0.096 0.904 13 C -0.211 4.211 14 N -0.557 5.557 15 Si 0.815 3.185 16 H -0.197 1.197 17 H -0.193 1.193 18 H -0.197 1.197 19 C -0.074 4.074 20 C -0.146 4.146 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.137 4.137 24 C -0.139 4.139 25 H 0.112 0.888 26 H 0.128 0.872 27 H 0.136 0.864 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.228 0.772 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.167 0.833 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.555 -10.354 -0.506 16.282 hybrid contribution 0.808 0.818 0.226 1.172 sum -11.747 -9.536 -0.280 15.133 Atomic orbital electron populations 1.23997 0.95938 1.02367 1.01373 1.23048 0.96307 0.98433 0.99721 1.20748 0.98063 0.95704 0.98634 1.21443 0.97725 0.96055 0.98519 1.21266 0.96624 0.98373 0.95762 1.20219 0.96112 0.96046 0.94954 0.87672 1.20695 0.83182 0.89505 0.83317 1.90471 1.72474 1.51316 1.37927 1.41914 1.32053 1.21397 1.24432 1.19698 1.15542 1.00417 1.11035 0.90358 1.26049 0.98501 1.01942 0.94580 1.69689 1.35226 1.37322 1.13474 0.84948 0.77555 0.77446 0.78515 1.19706 1.19309 1.19676 1.19555 0.96775 0.95789 0.95261 1.21025 0.97513 0.97944 0.98131 1.21327 0.99870 0.99499 0.93787 1.21448 0.99003 0.94153 0.99793 1.21448 0.95997 0.99448 0.96776 1.21301 1.00124 0.98300 0.94209 0.88809 0.87220 0.86420 0.92156 0.90918 0.91901 0.90780 0.92400 0.93115 0.77162 0.91258 0.88490 0.84826 0.83501 0.83314 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.49 14.32 67.78 0.97 -2.52 16 2 C -0.16 -2.99 9.52 25.64 0.24 -2.75 16 3 C -0.09 -2.09 5.66 29.85 0.17 -1.92 16 4 C -0.10 -2.48 5.01 30.60 0.15 -2.33 16 5 C -0.08 -2.71 3.93 30.60 0.12 -2.59 16 6 C -0.05 -1.91 2.38 -12.28 -0.03 -1.94 16 7 H 0.11 3.45 7.88 -2.39 -0.02 3.43 16 8 C 0.45 22.10 6.73 87.66 0.59 22.69 16 9 O -0.63 -36.16 15.50 -3.07 -0.05 -36.20 16 10 N -0.56 -30.11 5.19 -306.98 -1.59 -31.70 16 11 C -0.34 -19.69 9.68 84.04 0.81 -18.88 16 12 H 0.08 4.86 7.16 -2.91 -0.02 4.83 16 13 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 14 N -0.92 -50.40 13.05 21.66 0.28 -50.12 16 15 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 C -0.07 -2.48 3.56 -19.86 -0.07 -2.55 16 20 C -0.13 -4.48 8.76 22.27 0.19 -4.29 16 21 C -0.13 -3.70 10.05 22.27 0.22 -3.47 16 22 C -0.13 -3.15 10.05 22.27 0.22 -2.93 16 23 C -0.12 -2.96 10.05 22.27 0.22 -2.74 16 24 C -0.12 -3.48 9.67 22.27 0.22 -3.26 16 25 H 0.09 1.63 7.84 -2.91 -0.02 1.61 16 26 H 0.11 1.54 8.06 -2.91 -0.02 1.52 16 27 H 0.12 1.95 8.06 -2.91 -0.02 1.93 16 28 H 0.06 1.39 7.79 -2.39 -0.02 1.37 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.60 7.38 -2.39 -0.02 1.58 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 2.04 7.95 -2.39 -0.02 2.02 16 33 H 0.05 1.81 7.24 -2.39 -0.02 1.80 16 34 H 0.39 20.46 7.78 -92.71 -0.72 19.74 16 35 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 36 H 0.10 3.75 7.56 -2.91 -0.02 3.73 16 37 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 38 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 39 H 0.15 2.75 8.06 -2.90 -0.02 2.73 16 40 H 0.14 3.36 7.95 -2.91 -0.02 3.34 16 Total: -1.00 -67.76 340.87 5.47 -62.29 By element: Atomic # 1 Polarization: 39.37 SS G_CDS: 0.29 Total: 39.66 kcal Atomic # 6 Polarization: -34.11 SS G_CDS: 4.51 Total: -29.60 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -1.31 Total: -81.82 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -0.05 Total: -36.20 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -67.76 5.47 -62.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879173581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.442 kcal (2) G-P(sol) polarization free energy of solvation -67.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds